mRNA_P-wetherbeei_contig1787.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1787.1.1
Unique NamemRNA_P-wetherbeei_contig1787.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: A0A835ZAE4_9STRA (RAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAE4_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.390e-42
Identity = 85/152 (55.92%), Postives = 106/152 (69.74%), Query Frame = 1
Query:    1 HLSVSHILKLMHIEHTVESEHDIDIA------------IVGHGL-LDPTNSAASSDAAAAGAGGPMSGTVRVRMAVEVDGPAHFTRNTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTMFFGSHDWSTY 417
            HL VS  L LM +EH  ESEHDIDI             +VG GL L  +++  + D++A  A       V +R+A+EVDGP HFT N+RR LGHTVLKHR+L ++GWTVVQVPF+ +D IPFWASME+KRYLQR+LGI RT+ FG+ DWSTY
Sbjct:  401 HLDVSKCLALMGVEHRNESEHDIDIXXXXXXXXXXXXEVVGVGLRLMSSDNDNNEDSSAQQASPSEDDHVPLRVAIEVDGPGHFTCNSRRSLGHTVLKHRILAQLGWTVVQVPFYHWDRIPFWASMERKRYLQRKLGITRTIHFGARDWSTY 552          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: A0A6H5K8K8_9PHAE (RAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K8_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.900e-36
Identity = 59/83 (71.08%), Postives = 72/83 (86.75%), Query Frame = 1
Query:  169 VRVRMAVEVDGPAHFTRNTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTMFFGSHDWSTY 417
            VR+++A+EVDGPAHFT+NT R LGH VLKHR L +MGWTVV +PF E+DPIPFW+SMEKKRYLQR+LGI RT+FFG  D S++
Sbjct:  142 VRLKLALEVDGPAHFTKNTARPLGHMVLKHRTLSKMGWTVVSIPFLEWDPIPFWSSMEKKRYLQRKLGITRTIFFGGTDCSSF 224          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: A0A6T8NB22_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NB22_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.830e-31
Identity = 67/140 (47.86%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   28 LMHIEHTVESEHDIDIAIVGHGLLDPTNSA----------ASSDAAAAGAGGPMSGTVRVRMAVEVDGPAHFTRNTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTMFFGSHDWSTY 417
            LM I+H  E + DID+AIV       T++A           S+     G     SG V  ++AVE DGP HFTRN RR LGHTVLK+R+L+  GWTVV+VP++E+D IPFWASME++RYLQR L     + F   D S Y
Sbjct:    2 LMRIKHYNEHDEDIDVAIVLRADSGWTHTAEFGECDDDLDCSAYHVNGGGYNSNSGNVHQKLAVEFDGPDHFTRNGRRALGHTVLKYRLLKMQGWTVVRVPYYEFDKIPFWASMERQRYLQRLLKTHPNLSFSQADVSEY 141          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: D8LMC1_ECTSI (RAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMC1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.630e-29
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 1
Query:  169 VRVRMAVEVDGPAHFTRNTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTM 387
            VR+++A+EVDGPAHFT+NT R LGH VLKHR L +MGWTVV +PF E+DPIPFW+SMEKKRYLQR+LGI RT+
Sbjct:  595 VRLKLALEVDGPAHFTKNTARPLGHMVLKHRTLSKMGWTVVSIPFLEWDPIPFWSSMEKKRYLQRKLGITRTI 667          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: A0A7R9UGE3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGE3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.340e-27
Identity = 60/162 (37.04%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    1 HLSVSHILKLMHIEHTVESEHDIDIAIVGHGLLDPTNSAASSDAAAAGAGGPMSGTVRVRMAVEVDGPAHFTRNTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYL-----------------------QRRLGIQRTMFFGSHDWSTY 417
            H SVSH L+ + + H  E + D DI I   G+                             A+EVDGP H+TRNTRR LGHT LKHRMLR+ GW V Q+P++++D IPFW+SME+KRY+                       QR++G+++ + F   D+S+Y
Sbjct:   45 HESVSHALRGLGVRHQNEQDEDADIIIPSLGV-----------------------------ALEVDGPDHYTRNTRRSLGHTHLKHRMLRQRGWRVAQIPYYDFDRIPFWSSMERKRYMKAPLHRLQEEHESDCASVRHRFVQRKIGLRKVITFSDRDFSSY 177          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: A0A1Z5JP87_FISSO (RAP domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP87_FISSO)

HSP 1 Score: 113 bits (282), Expect = 1.210e-26
Identity = 64/146 (43.84%), Postives = 88/146 (60.27%), Query Frame = 1
Query:    1 HLSVSHILKLMHIEHTVESEHDIDIAIVGHGLLDPTNSAASSDAAAAGAGGPMSGTVRVRMAVEVDGPAHFTRNTR-------RILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTMFFGSHDWSTY 417
            H S+S +L+LM + H  E + DID+AI+   L    +    +D         M GT  +++AVE DGP HF R+T        R LGHT LK+R+L+  GWTVV+VP++E+D IPFWASME++RYLQR L     + F + D S Y
Sbjct:  359 HKSISDLLRLMGVAHVNEHDEDIDVAII---LKSQASWTHETDV--------MCGTAGMKVAVEFDGPTHFARSTGCHNKVLPRALGHTNLKYRILKRQGWTVVRVPYYEFDKIPFWASMERQRYLQRLLKTHVNIRFSNLDVSEY 493          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: A0A7S0FIH3_9STRA (Hypothetical protein n=2 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIH3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.670e-26
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 HLSVSHILKLMHIEHTVESEHDIDIAIVGHGLLDPTNSAASSDAAAAGAGGPMSGTVRVRMAVEVDGPAHFTR----NTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTMFFGSHDWSTY 417
            H S+S  L LM + H  E + DID+AI+       T++A   D   +            ++AVE DGP HFTR    N  R LGHTVLK+R+L+  GWTVV+VPF E+D IPFWASME++RYLQR L     + F   D S Y
Sbjct:  131 HKSLSQTLDLMGVAHYNEHDEDIDVAIILKSESSWTHTAERGDHKES----------HHKVAVEFDGPNHFTRAVGSNKPRALGHTVLKYRILKRQGWTVVRVPFFEFDKIPFWASMERQRYLQRLLKTHADIRFSEIDVSEY 263          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: A0A448Z2H7_9STRA (RAP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2H7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.270e-26
Identity = 70/163 (42.94%), Postives = 92/163 (56.44%), Query Frame = 1
Query:    1 HLSVSHILKLMHIEHTVESEHDIDIAIVGHGLLDPT---------NSAASSDAAAAGAGGPMSGTVRVRMAVEVDGPAHFTR---------------NTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTMFFGSHDWSTY 417
            H S+S  L+LM + H  E E DID+AI+    L P          +   SS+AA        + T  V +A+E DGP HFTR               NT R LGHTVLK+R+L++ GWTVV+VP++E+D IPFWASME++RYLQR+L     + F   D S Y
Sbjct:  814 HKSLSSTLELMGVSHINEHEEDIDVAII----LQPDAMWVHETDMDKDTSSEAAP-------NATDHVSVAIEFDGPNHFTRVRTEPQEPSGLPPRPNTPRALGHTVLKYRLLKQQGWTVVRVPYYEFDKIPFWASMERQRYLQRKLKTHANIKFSEVDVSEY 965          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: A0A4D9DBM4_9STRA (RAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBM4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.410e-25
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    7 SVSHILKLMHIEHTVESEHDIDIAIVGHGLLDPTNSAASSDAAAAGAGGPMSGTVRVRMAVEVDGPAHFTRNTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTMFFGSHDWSTY 417
            +V+ +L+ +HI H VE+EHDIDI +  HG+                             A+EVDGPAHF RNT   +GHT++K R+L  MG+ V+ VP  E+D IP+W+SME KRYLQR+   +  ++F   D ST+
Sbjct:  612 AVAKVLESLHIRHRVEAEHDIDILLPEHGV-----------------------------ALEVDGPAHFLRNTGHPMGHTIMKRRLLELMGYNVISVPHFEFDRIPYWSSMELKRYLQRKCQTEEVLYFNDLDSSTH 719          
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Match: B7FRF5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRF5_PHATC)

HSP 1 Score: 109 bits (273), Expect = 3.680e-25
Identity = 65/149 (43.62%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 HLSVSHILKLMHIEHTVESEHDIDIAIVGHGLLDPTNSAASSDAAAAGAGGPMSGTVRVRMAVEVDGPAHFTRNTR----------RILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFWASMEKKRYLQRRLGIQRTMFFGSHDWSTY 417
            H S+S  L LM I H  E + DID+AIV       T+                 GT  V++AVE DGP HFTR  +          R LGHTVLK+R+L++ GWTVV+VP++E+D IP+WASME++RYLQR L     + F   D S Y
Sbjct:  775 HRSLSQALDLMGIAHKNEHDEDIDVAIVLKKSAVWTHQTKRD------------GTEGVKLAVEFDGPNHFTRQRKPSNGSKPDVPRALGHTVLKYRLLKKQGWTVVRVPYYEFDKIPYWASMERQRYLQRLLKTHANLRFSQVDVSEY 911          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1787.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAE4_9STRA1.390e-4255.92RAP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5K8K8_9PHAE3.900e-3671.08RAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6T8NB22_9STRA5.830e-3147.86Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
D8LMC1_ECTSI1.630e-2973.97RAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9UGE3_9STRA2.340e-2737.04Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5JP87_FISSO1.210e-2643.84RAP domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A7S0FIH3_9STRA1.670e-2645.45Hypothetical protein n=2 Tax=Minutocellus polymorp... [more]
A0A448Z2H7_9STRA2.270e-2642.94RAP domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A4D9DBM4_9STRA1.410e-2540.88RAP domain-containing protein n=2 Tax=Monodopsidac... [more]
B7FRF5_PHATC3.680e-2543.62Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1787contigP-wetherbeei_contig1787:101..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr31474
PFAMsRAP
Model size417
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.97e-24
EggNOG OGs2CNPA@1|root,2QXB5@2759|Eukaryota,2XASP@2836|Bacillariophyta
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186129.4168458-UTR-P-wetherbeei_contig1787:100..1301683186129.4168458-UTR-P-wetherbeei_contig1787:100..130Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1787 101..130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186129.4280026-CDS-P-wetherbeei_contig1787:130..2141683186129.4280026-CDS-P-wetherbeei_contig1787:130..214Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1787 131..214 +
1683186129.438328-CDS-P-wetherbeei_contig1787:475..6551683186129.438328-CDS-P-wetherbeei_contig1787:475..655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1787 476..655 +
1683186129.45925-CDS-P-wetherbeei_contig1787:967..10901683186129.45925-CDS-P-wetherbeei_contig1787:967..1090Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1787 968..1090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1787.1.1prot_P-wetherbeei_contig1787.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1787 131..1090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1787.1.1

>prot_P-wetherbeei_contig1787.1.1 ID=prot_P-wetherbeei_contig1787.1.1|Name=mRNA_P-wetherbeei_contig1787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MHIEHTVESEHDIDIAIVGHGLLDPTNSAASSDAAAAGAGGPMSGTVRVR
MAVEVDGPAHFTRNTRRILGHTVLKHRMLREMGWTVVQVPFHEYDPIPFW
ASMEKKRYLQRRLGIQRTMFFGSHDWSTY
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mRNA from alignment at P-wetherbeei_contig1787:101..1090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1787.1.1 ID=mRNA_P-wetherbeei_contig1787.1.1|Name=mRNA_P-wetherbeei_contig1787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig1787:101..1090+ (Phaeothamnion wetherbeei SAG_119_79)
CACCTGAGCGTGAGCCACATCCTCAAGCTGATGCACATCGAGCACACCGT CGAGAGCGAGCATGATATCGACATTGCCATCGTTGGCCATGGCCTCCTCG ACCCCACCAATTCTGTCGCAGCCGTCGCAATCGCTGCTGCCGCCGCCGTC CACCGGGCCGACAACGGCGGCGGTGGGCATGGCAGCAGCGGTGGTGCGGT GGTAGCGGCAGGTTATGTGGTAGCCGGACCGATGGCAATGGCAGCGCTGC CCGGAAATGGGGCCGGCGACACCGCTGCAACTGCCACCACTGCCACCGGT GCTTCCTCCTCTCCTTGCTCGGGAGCAGCAGCATTAAAGCCGGCAGCGGG AGCAGTAGGGGCGGCGGCGGAGAAGGCGGCCTCGTCGGACGCGGCGGCGG CTGGAGCAGGGGGGCCGATGTCGGGCACGGTGCGGGTCCGCATGGCGGTG GAGGTGGACGGGCCCGCGCACTTCACGCGCAACACGCGCCGCATCCTCGG CCACACTGTGCTGAAGCACCGCATGCTCCGCGAGATGGGCTGGACCGTCG TGCAGGTGTGCTGAGGGGAAGGCAAAGTACGACGGGAGAAAGGGAAATGG CGAAGAATTAAAGGAGGGCCCGCGCAGTTCTCTTTTGGATGTTGCGGCCA GGTGGCCTTTGCTACTGCGGGGATCGGCGGCCCGGGGCGGGTGGATCGCT TGCCAACGGGGGGGGCACTCTGCCTGCATCTTCTTTGAGGCGCGTGAACG TTGGCCTGTCGAGCTTGCAATAAAGCGTCTCTGAATTTACTTCTGTTAAC ACTTGGTCAACCATTGTTTGACTGTTAACCGTGTGGTCCGTTGCAACCCA CCGCCAAAACCCCGCAGGTTCCATTCCACGAGTACGACCCAATTCCGTTT TGGGCGAGCATGGAGAAGAAGCGCTACCTGCAGCGACGCCTCGGCATCCA GCGTACCATGTTCTTCGGTAGCCACGATTGGAGCACCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1787:101..1090+

>mRNA_P-wetherbeei_contig1787.1.1 ID=mRNA_P-wetherbeei_contig1787.1.1|Name=mRNA_P-wetherbeei_contig1787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig1787:101..1090+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACATCGAGCACACCGTCGAGAGCGAGCATGATATCGACATTGCCAT
CGTTGGCCATGGCCTCCTCGACCCCACCAATTCTGCGGCCTCGTCGGACG
CGGCGGCGGCTGGAGCAGGGGGGCCGATGTCGGGCACGGTGCGGGTCCGC
ATGGCGGTGGAGGTGGACGGGCCCGCGCACTTCACGCGCAACACGCGCCG
CATCCTCGGCCACACTGTGCTGAAGCACCGCATGCTCCGCGAGATGGGCT
GGACCGTCGTGCAGGTTCCATTCCACGAGTACGACCCAATTCCGTTTTGG
GCGAGCATGGAGAAGAAGCGCTACCTGCAGCGACGCCTCGGCATCCAGCG
TACCATGTTCTTCGGTAGCCACGATTGGAGCACCTAC
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