mRNA_P-wetherbeei_contig17837.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17837.2.1
Unique NamemRNA_P-wetherbeei_contig17837.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A3C2B6D5_9ACTN (Anti-sigma factor antagonist n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B6D5_9ACTN)

HSP 1 Score: 127 bits (318), Expect = 8.470e-36
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRL 318
            M + C    +GG PVL V G++D++++ T  DHL + +  H GAE+ VDLDGV +LDDT LG+LLGAAGRARE GG++VVVCT P LL+RFA T LDRA++VR+R+
Sbjct:    1 MDVRCTHSTVGGRPVLHVSGEIDLSSLPTLHDHLSRMVLEHPGAEVTVDLDGVYALDDTGLGMLLGAAGRAREHGGDVVVVCTAPHLLQRFALTGLDRALEVRARV 106          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A6N2DN81_9ACTN (Anti-sigma factor antagonist n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DN81_9ACTN)

HSP 1 Score: 115 bits (288), Expect = 2.680e-31
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRL 318
            M +  +L ++   PVL V G +D+AT+ T   HL +AI AH G  L VDLD VT++DD  LGVLLGAAGRAR+ GG+LVVV ++ RL  RF  T LDRA+DVR RL
Sbjct:    1 MDLHARLDLVASRPVLSVDGVIDLATIPTLHSHLARAIVAHPGVTLTVDLDAVTAVDDCGLGVLLGAAGRARDAGGDLVVVASSERLRGRFRLTGLDRAVDVRERL 106          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A539DXQ5_9ACTN (Anti-sigma factor antagonist n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DXQ5_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 3.300e-30
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
            M + C+ VI+G  PVL V G+LD+A++  + D +++    H G  + +DLDGV+ LDD  LGVLLGAAGRARE  G++V+VCT  RLLERF  + L RAIDVR RLA
Sbjct:    1 MDLLCRSVIVGELPVLVVSGELDLASIPLFSDAVVRLTNEHIGVTVAIDLDGVSVLDDAGLGVLLGAAGRAREHDGDVVLVCTGKRLLERFERSGLMRAIDVRQRLA 107          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A6I3F6W6_9ACTN (Anti-sigma factor antagonist n=2 Tax=root TaxID=1 RepID=A0A6I3F6W6_9ACTN)

HSP 1 Score: 111 bits (277), Expect = 3.460e-29
Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
            M +   L  +G +PVL + G++D++TV    DHL +A++ H G  L VDLDGV +LDDT LGVLLGAAGR RE  GELV+VCT  RL+ RF  T LDRAI V +R++
Sbjct:   29 MELIGHLTSLGTSPVLHLDGEIDLSTVPQLHDHLARAMSLHIGHTLFVDLDGVAALDDTGLGVLLGAAGRCREQHGELVLVCTAERLVARFKLTGLDRAIQVVARVS 135          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A3C1LAZ5_9ACTN (Anti-sigma factor antagonist (Fragment) n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1LAZ5_9ACTN)

HSP 1 Score: 108 bits (271), Expect = 1.300e-28
Identity = 54/93 (58.06%), Postives = 74/93 (79.57%), Query Frame = 1
Query:   43 VLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
            VLQ  G++D+AT+  + D L +AI+ H GAE+ VDLDGVT+LDDT +G+LLGAAGRARE GG+L++VC + RL  RF+ T LDRA+ V++R+A
Sbjct:    1 VLQASGEIDLATLPYFHDQLNRAISLHVGAEVFVDLDGVTALDDTGIGMLLGAAGRAREHGGDLLLVCNSDRLRSRFSLTGLDRAMVVQARVA 93          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A7W1LS82_9ACTN (Anti-sigma factor antagonist n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1LS82_9ACTN)

HSP 1 Score: 105 bits (263), Expect = 5.550e-26
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    4 SMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSR 315
            S+ C +  + G  V+ V G +D+ATVAT RDH+L+ I+ H GA +++DLD V SLDD  LGVLLG AGRARE GG+L +V +  R+ +R A T  DRA+DV SR
Sbjct:    3 SLRCTVRDVEGTWVVDVSGSVDLATVATLRDHVLEVISTHAGATIVIDLDEVVSLDDVGLGVLLGLAGRAREMGGDLRLVSSPGRVRDRLAITGADRAVDVSSR 106          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: UPI000E353DC8 (STAS domain-containing protein n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E353DC8)

HSP 1 Score: 99.8 bits (247), Expect = 5.720e-25
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   28 IGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
            + G  V+++ G LD++T+ T ++ L++AI ++ GA + VDLDG+  LDD  LGVL+GAAGRAR  GG++VV+CT   LL RF+ TRLDRAI +   LA
Sbjct:    9 VAGTAVVELAGRLDLSTLPTLQNALVRAIGSNIGATVAVDLDGLEGLDDVGLGVLVGAAGRARGSGGDIVVICTRDALLRRFSITRLDRAITILPNLA 106          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A4P5RXF1_9ACTN (Anti-sigma factor antagonist n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5RXF1_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 1.420e-24
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
            M +S +   +G   VL V GD+D+AT+  + D + + ++   G+ ++VDLDG  S DD ALG+LLGAAG+AR  GG++VVVCT PRL ER   T  D+A+ VR  +A
Sbjct:    1 MELSLRRSAVGAQQVLSVSGDIDVATLPRFADSITRLLSDAIGSIVVVDLDGAQSFDDAALGLLLGAAGKARTAGGDVVVVCTEPRLRERLMITGFDKAVIVRHSIA 107          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A7K1B7S0_9ACTN (Anti-sigma factor antagonist n=2 Tax=root TaxID=1 RepID=A0A7K1B7S0_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 5.430e-24
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRL 318
            M + C+ + +GG   L ++GDLD+A+V    + L + +   RG  + VDLDG+  LDD  LGVLLG AGRARE GG+LV+VCT  R   RF  + L RAI+VR RL
Sbjct:    1 MDLRCRTLQLGGTTALVLEGDLDLASVPALHNALGRLLNDARGDVVAVDLDGLDVLDDAGLGVLLGFAGRAREAGGDLVLVCTNERHRARFELSGLARAIEVRDRL 106          
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A7W1UVT2_9ACTN (Anti-sigma factor antagonist n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1UVT2_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 1.370e-22
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
            MS+ C   ++    ++ + G +D++TVA  RDHLL+ ++   G  +++DLD V ++DD  LG+LLG AGRARE GG+L +VC   RL +R A T  DRA+ V S  A
Sbjct:    1 MSLKCSDELLDDCVIVTLAGVVDLSTVAALRDHLLRVVSERPGGTVVIDLDEVMAVDDAGLGILLGLAGRAREHGGDLRLVCAPGRLRDRLALTGADRAVAVSSNWA 107          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B6D5_9ACTN8.470e-3657.55Anti-sigma factor antagonist n=1 Tax=Acidimicrobia... [more]
A0A6N2DN81_9ACTN2.680e-3155.66Anti-sigma factor antagonist n=1 Tax=Ilumatobacter... [more]
A0A539DXQ5_9ACTN3.300e-3054.21Anti-sigma factor antagonist n=1 Tax=Acidimicrobia... [more]
A0A6I3F6W6_9ACTN3.460e-2954.21Anti-sigma factor antagonist n=2 Tax=root TaxID=1 ... [more]
A0A3C1LAZ5_9ACTN1.300e-2858.06Anti-sigma factor antagonist (Fragment) n=2 Tax=Ac... [more]
A0A7W1LS82_9ACTN5.550e-2652.88Anti-sigma factor antagonist n=1 Tax=Acidimicrobii... [more]
UPI000E353DC85.720e-2551.02STAS domain-containing protein n=1 Tax=Desertimona... [more]
A0A4P5RXF1_9ACTN1.420e-2446.73Anti-sigma factor antagonist n=1 Tax=Actinomycetia... [more]
A0A7K1B7S0_9ACTN5.430e-2449.06Anti-sigma factor antagonist n=2 Tax=root TaxID=1 ... [more]
A0A7W1UVT2_9ACTN1.370e-2243.93Anti-sigma factor antagonist n=1 Tax=Acidimicrobii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17837contigP-wetherbeei_contig17837:420..743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog994479.GL877878_gene3465
PFAMsSTAS,STAS_2
Model size324
Max annot lvl201174|Actinobacteria
KEGG koko:K04749
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.85e-13
EggNOG OGsCOG1366@1|root,COG3653@1|root,COG1366@2|Bacteria,COG3653@2|Bacteria,2IHQG@201174|Actinobacteria
DescriptionBelongs to the anti-sigma-factor antagonist family
Cds size324
COG categoryT
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.7457116-CDS-P-wetherbeei_contig17837:419..7431683186128.7457116-CDS-P-wetherbeei_contig17837:419..743Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17837 420..743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17837.2.1prot_P-wetherbeei_contig17837.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17837 420..743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17837.2.1

>prot_P-wetherbeei_contig17837.2.1 ID=prot_P-wetherbeei_contig17837.2.1|Name=mRNA_P-wetherbeei_contig17837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDL
DGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAI
DVRSRLA*
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mRNA from alignment at P-wetherbeei_contig17837:420..743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17837.2.1 ID=mRNA_P-wetherbeei_contig17837.2.1|Name=mRNA_P-wetherbeei_contig17837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig17837:420..743+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCATGTCTTGCAAGCTCGTCATCATCGGTGGCGCACCAGTGCTGCA GGTGCAGGGCGATCTGGACATGGCCACCGTCGCCACGTGGCGCGACCACC TGCTGAAGGCGATCACTGCGCACCGGGGTGCCGAGCTGCTCGTCGACCTC GACGGTGTCACCTCCCTCGATGACACTGCGCTGGGCGTGCTGCTCGGCGC GGCCGGCCGCGCTCGCGAAGGCGGCGGCGAACTGGTCGTGGTGTGCACGA CTCCTCGCCTGTTGGAGCGGTTCGCGACGACGCGCCTCGATCGGGCGATC GATGTGCGCTCCCGACTGGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17837:420..743+

>mRNA_P-wetherbeei_contig17837.2.1 ID=mRNA_P-wetherbeei_contig17837.2.1|Name=mRNA_P-wetherbeei_contig17837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig17837:420..743+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCATGTCTTGCAAGCTCGTCATCATCGGTGGCGCACCAGTGCTGCA
GGTGCAGGGCGATCTGGACATGGCCACCGTCGCCACGTGGCGCGACCACC
TGCTGAAGGCGATCACTGCGCACCGGGGTGCCGAGCTGCTCGTCGACCTC
GACGGTGTCACCTCCCTCGATGACACTGCGCTGGGCGTGCTGCTCGGCGC
GGCCGGCCGCGCTCGCGAAGGCGGCGGCGAACTGGTCGTGGTGTGCACGA
CTCCTCGCCTGTTGGAGCGGTTCGCGACGACGCGCCTCGATCGGGCGATC
GATGTGCGCTCCCGACTGGCCTGA
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