mRNA_P-wetherbeei_contig17837.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17837.1.1
Unique NamemRNA_P-wetherbeei_contig17837.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: A0A7X9KLN1_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KLN1_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 5.870e-20
Identity = 67/116 (57.76%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   10 DCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGDG-GAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            D GQA VELAL LP++   LLA VQ+AV+ RD LAVQ AARE ARAAAVS    GA   AA  AV L  L V  + G+  VT       HT+V LIG LLPDV + ATVTMA EPP
Sbjct:   11 DRGQATVELALALPMVCLLLLAMVQVAVIGRDQLAVQLAAREAARAAAVSAQPVGAGIAAAHRAVALRPLDVLISEGDGIVTAIVRFTDHTDVALIGALLPDVVLSATVTMAAEPP 126          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: A0A6I3WQV8_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3WQV8_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 1.800e-19
Identity = 60/115 (52.17%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   10 DCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGDGGAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            D GQA VELAL +PLL   LL  V++AVVVRD L    AAR G RAAAVS D  +A  AA          VST++ +  VTVT     HT+VPLIG L+PDV +    TM LEPP
Sbjct:   15 DRGQATVELALAMPLLCLLLLGVVEIAVVVRDQLVAIEAARTGVRAAAVSADPASAATAAVQRAIGQPASVSTSISDGYVTVTVVITNHTDVPLIGLLMPDVELRGDATMILEPP 129          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: UPI000E346693 (pilus assembly protein n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E346693)

HSP 1 Score: 84.0 bits (206), Expect = 2.520e-18
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   10 DCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGD-GGAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            D GQAAVELA+ +PL++ F+L  +Q+A+V RD LAV+ AARE ARAA+VS D  GAA  AA+    L  L VS +V    V V  ++   T+V ++G  + DV +DAT TMA +PP
Sbjct:   20 DRGQAAVELAMAMPLVVVFVLGVLQVALVARDQLAVELAAREAARAASVSADPAGAATAAASRVTELGPLDVSVSVAGDVVRVRVSYTNPTDVAIVGAAIGDVTLDATATMAFDPP 135          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: UPI0003455F87 (pilus assembly protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI0003455F87)

HSP 1 Score: 80.1 bits (196), Expect = 5.650e-17
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    7 RDCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGD-GGAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            RD GQAAVE A+ LPL++  +LA  Q+ V +R+ +AV+ AAREGARAAAVS   GGAA  AA  AV L  + VS +V   TV+VT  +V  T++ +IG  +  V   AT TMALEPP
Sbjct:    8 RDRGQAAVEFAVALPLVVIAMLAIAQVGVTIRNEVAVELAAREGARAAAVSAQSGGAATSAARRAVALP-MDVSVSVEAATVSVTVTYVDPTDIAIIGAAIGPVTHSATATMALEPP 123          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: A0A7Y1ZYL1_9ACTN (Pilus assembly protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZYL1_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 7.590e-17
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    7 RDCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGD-GGAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            RD GQA VE AL LP+++   L  +Q+ + +R+ LAV+ AAREGARAAAVS D GGAA  AA  AV L  + V+   G  TVTVT  ++  T+V +IG  +      AT+TMA+EPP
Sbjct:    6 RDAGQATVEFALTLPIVIIVALGLLQVGIAIRNELAVELAAREGARAAAVSTDPGGAASAAARRAVALP-IGVAATEGGGTVTVTVTYIDPTDVAIIGRFIGPSTHTATITMAIEPP 121          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: A0A6I3CBF4_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3CBF4_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 2.680e-15
Identity = 60/115 (52.17%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   10 DCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGDGGAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            D GQAAVELAL LPL    LLAAVQ+ VV  D L V  AAR  ARAAAVS D   A   A + V      VSTA  +  VTVT +    T+VPL+G L+P+V +    TM LEPP
Sbjct:   55 DSGQAAVELALALPLFCVLLLAAVQIVVVAGDQLLVIQAARVAARAAAVSADPVTAGNDAAHRVLGSTAQVSTATHDAYVTVTVSITNGTDVPLVGALMPEVHLVGHATMLLEPP 169          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: A0A6C7E181_ILUCY (Uncharacterized protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E181_ILUCY)

HSP 1 Score: 75.1 bits (183), Expect = 6.230e-15
Identity = 58/114 (50.88%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   16 GQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGD-GGAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            GQAAVE A+ LPL++  LLA  Q+ V VR+ +AV+ AAREGARAAAVSGD  GA       AV+L  + VSTA G   V+VT  +V  T++ +IG  +  +   AT TMA+EPP
Sbjct:   19 GQAAVEFAVALPLIVVVLLAITQVGVSVRNEVAVELAAREGARAAAVSGDPAGAXXXXXRRAVSLP-IEVSTASGGGRVSVTVTYVDPTDIAIIGAAIGPITHRATATMAVEPP 131          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: A0A3C2B6F9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B6F9_9ACTN)

HSP 1 Score: 76.6 bits (187), Expect = 7.640e-15
Identity = 55/118 (46.61%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 SARDCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGDGGAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            +A D GQ+ VELAL LPL+   LL  +Q+A+VVR  LAVQ AAR GARAA               + ++  L V   V    VTVT  +   T+VPL+GWLLP V + A VTM +EPP
Sbjct:   87 AAGDTGQSTVELALALPLVCLLLLGVLQVALVVRSQLAVQAAARNGARAAXXXXXXXXXXXXXXXSTSIRPLEVDVDVSARRVTVTVRYAEPTDVPLVGWLLPTVRLRAAVTMPVEPP 204          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: A0A848UFD5_9ACTN (Pilus assembly protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UFD5_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 2.870e-14
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   10 DCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAAAVSGDGGAAEVAATNA-VTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            D GQA VE A+ LPL++  +   + +A+VVRD +AV+ AAREGARAAAVS           +A  TL  + V+T V  T VTVT  H +   +PL+G L+  V +DATVTM  EPP
Sbjct:   22 DRGQATVEFAIALPLVVVLVFGMLHVALVVRDQIAVELAAREGARAAAVSXXXXXXXXXXAHASTTLRPIGVATRVTATRVTVTITHRSRARLPLVGALIGGVDLDATVTMRREPP 137          
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Match: A0A7W1R5R8_9ACTN (Pilus assembly protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1R5R8_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 6.830e-14
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   82 QLAVVVRDVLAVQHAAREGARAAAVSGDGGAAEVAATNAVT-LDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGWLLPDVPVDATVTMALEPP 354
            Q+AVV RD +AV+ AAREGARAAAVS D  +A   A + VT L  L VS   G  TVTVT  +V+ T+V LIG ++P + + A+VTMALEPP
Sbjct:   35 QVAVVTRDRMAVELAAREGARAAAVSADPSSAAHRAVDEVTSLSPLDVSVDTGADTVTVTVRYVSDTDVALIGAVVPSIAMSASVTMALEPP 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17837.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KLN1_9ACTN5.870e-2057.76Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A6I3WQV8_9ACTN1.800e-1952.17Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
UPI000E3466932.520e-1849.14pilus assembly protein n=1 Tax=Desertimonas flava ... [more]
UPI0003455F875.650e-1752.14pilus assembly protein n=1 Tax=Ilumatobacter nonam... [more]
A0A7Y1ZYL1_9ACTN7.590e-1749.57Pilus assembly protein n=1 Tax=Ilumatobacter sp. T... [more]
A0A6I3CBF4_9ACTN2.680e-1552.17Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6C7E181_ILUCY6.230e-1550.88Uncharacterized protein n=1 Tax=Ilumatobacter cocc... [more]
A0A3C2B6F9_9ACTN7.640e-1546.61Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A848UFD5_9ACTN2.870e-1447.41Pilus assembly protein n=1 Tax=Ilumatobacter sp. T... [more]
A0A7W1R5R8_9ACTN6.830e-1455.43Pilus assembly protein n=2 Tax=Acidimicrobiia bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17837contigP-wetherbeei_contig17837:15..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_03570
PFAMsTadE
Model size357
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.02e-15
EggNOG OGsCOG4961@1|root,COG4961@2|Bacteria
DescriptionPFAM TadE family protein
Cds size357
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.715411-CDS-P-wetherbeei_contig17837:14..3711683186128.715411-CDS-P-wetherbeei_contig17837:14..371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17837 15..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17837.1.1prot_P-wetherbeei_contig17837.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17837 15..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17837.1.1

>prot_P-wetherbeei_contig17837.1.1 ID=prot_P-wetherbeei_contig17837.1.1|Name=mRNA_P-wetherbeei_contig17837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
SARDCGQAAVELALCLPLLMAFLLAAVQLAVVVRDVLAVQHAAREGARAA
AVSGDGGAAEVAATNAVTLDQLHVSTAVGNTTVTVTAAHVTHTEVPLIGW
LLPDVPVDATVTMALEPP*
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mRNA from alignment at P-wetherbeei_contig17837:15..371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17837.1.1 ID=mRNA_P-wetherbeei_contig17837.1.1|Name=mRNA_P-wetherbeei_contig17837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig17837:15..371+ (Phaeothamnion wetherbeei SAG_119_79)
TCGGCACGCGATTGTGGGCAGGCAGCGGTGGAGCTCGCGCTGTGCCTGCC GTTGCTGATGGCCTTCCTGTTGGCCGCGGTGCAGCTGGCCGTCGTCGTAC GCGACGTGCTGGCGGTGCAGCACGCGGCGCGCGAGGGCGCTCGCGCCGCA GCCGTCTCGGGCGACGGCGGCGCAGCCGAGGTCGCTGCGACGAATGCCGT CACGCTCGACCAGCTGCACGTCAGCACCGCCGTGGGCAACACGACGGTCA CCGTCACGGCCGCACACGTCACGCACACCGAGGTCCCGCTCATCGGCTGG CTGCTGCCCGACGTACCGGTGGACGCCACCGTGACGATGGCGCTCGAACC GCCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17837:15..371+

>mRNA_P-wetherbeei_contig17837.1.1 ID=mRNA_P-wetherbeei_contig17837.1.1|Name=mRNA_P-wetherbeei_contig17837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig17837:15..371+ (Phaeothamnion wetherbeei SAG_119_79)
TCGGCACGCGATTGTGGGCAGGCAGCGGTGGAGCTCGCGCTGTGCCTGCC
GTTGCTGATGGCCTTCCTGTTGGCCGCGGTGCAGCTGGCCGTCGTCGTAC
GCGACGTGCTGGCGGTGCAGCACGCGGCGCGCGAGGGCGCTCGCGCCGCA
GCCGTCTCGGGCGACGGCGGCGCAGCCGAGGTCGCTGCGACGAATGCCGT
CACGCTCGACCAGCTGCACGTCAGCACCGCCGTGGGCAACACGACGGTCA
CCGTCACGGCCGCACACGTCACGCACACCGAGGTCCCGCTCATCGGCTGG
CTGCTGCCCGACGTACCGGTGGACGCCACCGTGACGATGGCGCTCGAACC
GCCGTGA
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