mRNA_P-wetherbeei_contig17836.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17836.2.1
Unique NamemRNA_P-wetherbeei_contig17836.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A7C4XTF1_9HYPH (Protein usg n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XTF1_9HYPH)

HSP 1 Score: 153 bits (386), Expect = 9.170e-47
Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 1
Query:    1 MVSADFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            M   DFV+ ++GYSLTTAEILYR+PDHPSLLQT++WQDYDLHP+FPKL  FL FW AKL+G+LY+VRVAHSKLI+P EIR VDGQFRL+
Sbjct:    1 MPDRDFVAALQGYSLTTAEILYRMPDHPSLLQTYIWQDYDLHPRFPKLTGFLNFWAAKLEGRLYRVRVAHSKLIRPGEIRFVDGQFRLH 89          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A2W4TSU4_9PROT (Protein usg n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TSU4_9PROT)

HSP 1 Score: 144 bits (363), Expect = 2.960e-43
Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = 1
Query:    1 MVSADFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            MV A F ++++GYSLTTAEILYR+PDHPSLLQTFVWQDYDL P+FPKL  FL+FW   LDGKLY+VRVAH +LI PSE+RLV+G+ RL+
Sbjct:    1 MVDAGFAAMLRGYSLTTAEILYRMPDHPSLLQTFVWQDYDLAPEFPKLVKFLDFWSKNLDGKLYRVRVAHRRLIHPSEVRLVNGELRLH 89          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A2S5PAF9_HYPSQ (Protein usg n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PAF9_HYPSQ)

HSP 1 Score: 143 bits (361), Expect = 6.530e-43
Identity = 60/85 (70.59%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   13 DFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            DF++++ GYSLTTAEILY LPD+P+L+Q++VWQDYDLHP+FPKL+SFLEFW AKLDGKLY+V VAH+ LIKP+E++L+  +FRLN
Sbjct:    8 DFLAMLSGYSLTTAEILYHLPDYPALIQSYVWQDYDLHPRFPKLKSFLEFWSAKLDGKLYRVTVAHTGLIKPAEVKLIGAEFRLN 92          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: UPI00093108E0 (usg protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI00093108E0)

HSP 1 Score: 142 bits (358), Expect = 1.710e-42
Identity = 58/85 (68.24%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   13 DFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            +F S++KGYSLTTAEILYRLPDHP+LLQ+++WQDYDLHP+FPKL  FL+FWEAKL+GKL++V VAH+KL+ P+E+RLV  +F+++
Sbjct:    5 EFASLLKGYSLTTAEILYRLPDHPALLQSYIWQDYDLHPRFPKLTGFLDFWEAKLEGKLFKVTVAHNKLLSPAEVRLVGSEFKVH 89          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A6I3KFZ8_9HYPH (Protein usg n=3 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KFZ8_9HYPH)

HSP 1 Score: 141 bits (355), Expect = 4.910e-42
Identity = 59/85 (69.41%), Postives = 77/85 (90.59%), Query Frame = 1
Query:   13 DFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            +  +++KGYSLTTAEILYRLPDHP+LLQ+F+WQDYDLHP+FPKL SFL+FW AKL+GKL++V VAHSKL+ P+E+RLV  +FR++
Sbjct:    5 EIATLLKGYSLTTAEILYRLPDHPALLQSFIWQDYDLHPRFPKLTSFLDFWTAKLEGKLFKVTVAHSKLLTPAEVRLVGAEFRVH 89          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A1Q4DHN9_9HYPH (Protein usg n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DHN9_9HYPH)

HSP 1 Score: 139 bits (351), Expect = 2.000e-41
Identity = 62/89 (69.66%), Postives = 77/89 (86.52%), Query Frame = 1
Query:    1 MVSADFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            MVS+ F+  I+GY LTTAEILYR+PDH SLLQ++VWQ+YDL PKFP+LQ FL FW+AKLDG L+ VRVAHS+LIKP+E+R +DG FRL+
Sbjct:    1 MVSSGFLKQIQGYGLTTAEILYRMPDHRSLLQSYVWQEYDLFPKFPELQKFLAFWQAKLDGPLFSVRVAHSRLIKPAELRAIDGVFRLH 89          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A0D6JAA6_9HYPH (Protein usg n=1 Tax=Candidatus Filomicrobium marinum TaxID=1608628 RepID=A0A0D6JAA6_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 2.840e-41
Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    1 MVSADFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            M   DF  ++ GY+LTTAEILYRLPDHPSLLQT++WQDYDLHPKFPKL+SFL+FWEA LDGKLY+V V H  L+ P+E++LV  +F+L+
Sbjct:    1 MSDTDFSRMLTGYTLTTAEILYRLPDHPSLLQTYLWQDYDLHPKFPKLKSFLDFWEANLDGKLYKVSVNHRHLVSPAELKLVGNEFKLH 89          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A849TGD9_9HYPH (Protein usg n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TGD9_9HYPH)

HSP 1 Score: 139 bits (349), Expect = 4.040e-41
Identity = 58/89 (65.17%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 MVSADFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            M   DFV+++ G+SLTTAEI+YRLPDHPSLLQ+++WQDYD+ P+FPKL  FL+FW+  L+GKL+QVRVAH+ LIKP+E+RL+D +F+LN
Sbjct:    1 MADRDFVNMLAGFSLTTAEIVYRLPDHPSLLQSYIWQDYDMSPRFPKLLGFLKFWQNNLEGKLHQVRVAHTGLIKPAELRLIDDEFKLN 89          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A800E4Y9_9BACT (Protein usg n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800E4Y9_9BACT)

HSP 1 Score: 139 bits (349), Expect = 4.040e-41
Identity = 56/89 (62.92%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 MVSADFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            M   DF +++KGYSLTTAEILY +PDHP+LLQ+++WQDYDLHP+FPKL+ FL+FW A+L+GKLY+V VAH+KL+ P+E+RL+  +F+L+
Sbjct:    1 MAETDFSTVLKGYSLTTAEILYHMPDHPALLQSYIWQDYDLHPRFPKLKGFLDFWTAELEGKLYKVIVAHNKLLTPAEVRLIGDEFKLH 89          
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Match: A0A1Q4BI55_9HYPH (Aspartate-semialdehyde dehydrogenase n=1 Tax=Rhizobiales bacterium 62-17 TaxID=1895810 RepID=A0A1Q4BI55_9HYPH)

HSP 1 Score: 139 bits (349), Expect = 4.040e-41
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 MVSADFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQSFLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN 267
            M S DFV  + GY LTTAEILYR+PDHP++LQ+++WQDYDLHP+FP+L  FLEFW  KLDG LY VR+AH++LIKP+E+R+ D +F LN
Sbjct:    1 MASRDFVRQLAGYGLTTAEILYRMPDHPAILQSYIWQDYDLHPRFPELTRFLEFWTTKLDGSLYSVRIAHARLIKPAELRMCDQEFLLN 89          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17836.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XTF1_9HYPH9.170e-4775.28Protein usg n=1 Tax=Hyphomicrobiales bacterium Tax... [more]
A0A2W4TSU4_9PROT2.960e-4371.91Protein usg n=1 Tax=Proteobacteria bacterium TaxID... [more]
A0A2S5PAF9_HYPSQ6.530e-4370.59Protein usg n=2 Tax=Hyphomicrobium sp. TaxID=82 Re... [more]
UPI00093108E01.710e-4268.24usg protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 T... [more]
A0A6I3KFZ8_9HYPH4.910e-4269.41Protein usg n=3 Tax=Hyphomicrobium TaxID=81 RepID=... [more]
A0A1Q4DHN9_9HYPH2.000e-4169.66Protein usg n=1 Tax=Rhizobiales bacterium 64-17 Ta... [more]
A0A0D6JAA6_9HYPH2.840e-4167.42Protein usg n=1 Tax=Candidatus Filomicrobium marin... [more]
A0A849TGD9_9HYPH4.040e-4165.17Protein usg n=1 Tax=Hyphomicrobiaceae bacterium Ta... [more]
A0A800E4Y9_9BACT4.040e-4162.92Protein usg n=1 Tax=Planctomycetes bacterium TaxID... [more]
A0A1Q4BI55_9HYPH4.040e-4165.17Aspartate-semialdehyde dehydrogenase n=1 Tax=Rhizo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17836contigP-wetherbeei_contig17836:948..1217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog335659.S23_26270
Preferred nameMA20_32470
PFAMsUsg
Model size270
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-41
EggNOG OGsCOG5425@1|root,COG5425@2|Bacteria,1N08I@1224|Proteobacteria,2UBVR@28211|Alphaproteobacteria,3JZGZ@41294|Bradyrhizobiaceae
DescriptionUsg-like family
Cds size270
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.6826193-CDS-P-wetherbeei_contig17836:947..12171683186128.6826193-CDS-P-wetherbeei_contig17836:947..1217Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17836 948..1217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17836.2.1prot_P-wetherbeei_contig17836.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17836 948..1217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17836.2.1

>prot_P-wetherbeei_contig17836.2.1 ID=prot_P-wetherbeei_contig17836.2.1|Name=mRNA_P-wetherbeei_contig17836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MVSADFVSIIKGYSLTTAEILYRLPDHPSLLQTFVWQDYDLHPKFPKLQS
FLEFWEAKLDGKLYQVRVAHSKLIKPSEIRLVDGQFRLN*
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mRNA from alignment at P-wetherbeei_contig17836:948..1217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17836.2.1 ID=mRNA_P-wetherbeei_contig17836.2.1|Name=mRNA_P-wetherbeei_contig17836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig17836:948..1217- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAGCGCCGACTTCGTCAGTATCATCAAGGGCTACAGCCTGACGAC GGCTGAGATCCTGTATCGACTGCCGGATCATCCGTCCCTGCTGCAGACGT TCGTCTGGCAGGACTACGATCTGCACCCGAAGTTCCCCAAGTTGCAGAGT TTCCTCGAGTTCTGGGAAGCAAAGCTCGATGGCAAGCTCTACCAGGTGCG GGTCGCCCACTCCAAGCTCATCAAGCCGAGCGAGATCAGGCTTGTAGACG GGCAGTTCCGCCTGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17836:948..1217-

>mRNA_P-wetherbeei_contig17836.2.1 ID=mRNA_P-wetherbeei_contig17836.2.1|Name=mRNA_P-wetherbeei_contig17836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig17836:948..1217- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAGCGCCGACTTCGTCAGTATCATCAAGGGCTACAGCCTGACGAC
GGCTGAGATCCTGTATCGACTGCCGGATCATCCGTCCCTGCTGCAGACGT
TCGTCTGGCAGGACTACGATCTGCACCCGAAGTTCCCCAAGTTGCAGAGT
TTCCTCGAGTTCTGGGAAGCAAAGCTCGATGGCAAGCTCTACCAGGTGCG
GGTCGCCCACTCCAAGCTCATCAAGCCGAGCGAGATCAGGCTTGTAGACG
GGCAGTTCCGCCTGAACTGA
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