mRNA_P-wetherbeei_contig17821.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17821.1.1
Unique NamemRNA_P-wetherbeei_contig17821.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17821contigP-wetherbeei_contig17821:287..1174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size636
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.3111684-UTR-P-wetherbeei_contig17821:286..3721683186128.3111684-UTR-P-wetherbeei_contig17821:286..372Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17821 287..372 +
1683186128.3427954-UTR-P-wetherbeei_contig17821:1035..11741683186128.3427954-UTR-P-wetherbeei_contig17821:1035..1174Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17821 1036..1174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.3209314-CDS-P-wetherbeei_contig17821:372..5251683186128.3209314-CDS-P-wetherbeei_contig17821:372..525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17821 373..525 +
1683186128.3307827-CDS-P-wetherbeei_contig17821:777..10351683186128.3307827-CDS-P-wetherbeei_contig17821:777..1035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17821 778..1035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17821.1.1prot_P-wetherbeei_contig17821.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17821 373..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17821.1.1

>prot_P-wetherbeei_contig17821.1.1 ID=prot_P-wetherbeei_contig17821.1.1|Name=mRNA_P-wetherbeei_contig17821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MDSRGVPSALTYSRFTISRDVLPRSLELPVEAKAALEWKPPAERSLSAEL
QAIQRYEDERVRRQEEQQKEAAAAASAAAEAAAACKKAEADKAEMRKKLE
NFMSVTGAAEPEASKLLGGSNGDLDAAVHKYFDSRP*
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mRNA from alignment at P-wetherbeei_contig17821:287..1174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17821.1.1 ID=mRNA_P-wetherbeei_contig17821.1.1|Name=mRNA_P-wetherbeei_contig17821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=888bp|location=Sequence derived from alignment at P-wetherbeei_contig17821:287..1174+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCCCCTGCTCCTCCAGGCGACGTTAAGTGCTCGCCGGGCGCCTAACT
CGTTTTTTTTGACGAGGGAAAAATCGATACCCGTAAATGGACAGCCGAGG
CGTGCCCTCTGCACTGACGTACAGCCGCTTCACGATTTCGCGCGACGTGC
TCCCTCGAAGCTTGGAGTTGCCGGTCGAGGCGAAGGCGGCTTTGGAGTGG
AAGCCGCCGGCCGAGCGCTCACTCTCAGCGGAGCTCCAGGTGCACTTGCG
GATCTCTTGCAGGCAAAGTTTGCCTAACGATGGAGAGAGCAGCCTTGTCA
AAGAACGAGCGAGGAATTTTGGAGTTCTAGGATGGGAACAAAAGAAGCTG
TTTTTGGTTTACATTTGGTGCACTCTGCGCAGGGAGCATTTTTCCTTATT
TGTCCGCTGCCCGACTAGGTACGATTCCTCAATTTATCACCGTTCCCGAA
CTTTTCTCCCTTTCCCAAATTGGGACATCTCTCGTTGGCAGGCGATTCAG
CGTTATGAGGATGAGCGTGTGAGGCGTCAGGAAGAGCAGCAAAAGGAGGC
AGCAGCCGCAGCCTCTGCTGCCGCGGAAGCGGCCGCGGCCTGTAAGAAGG
CGGAAGCTGACAAAGCGGAAATGCGTAAGAAGTTGGAAAACTTCATGTCC
GTAACCGGAGCCGCTGAGCCGGAGGCGTCCAAGCTGTTGGGGGGAAGCAA
CGGCGACCTCGACGCCGCCGTACACAAGTACTTCGACTCACGTCCATGAC
GCCGTGATTGTTAAGTACTAAAATCTTCCTTTTTTGGATGCAATTTTCCT
GAAAACGGATCGAGAATTTCTCTGATTGAAAGGGCGATGCAGGCACCCCT
GCCAAAGAAACAATGTTCGAGCTATTAATCGAAGGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17821:287..1174+

>mRNA_P-wetherbeei_contig17821.1.1 ID=mRNA_P-wetherbeei_contig17821.1.1|Name=mRNA_P-wetherbeei_contig17821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig17821:287..1174+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAGCCGAGGCGTGCCCTCTGCACTGACGTACAGCCGCTTCACGAT
TTCGCGCGACGTGCTCCCTCGAAGCTTGGAGTTGCCGGTCGAGGCGAAGG
CGGCTTTGGAGTGGAAGCCGCCGGCCGAGCGCTCACTCTCAGCGGAGCTC
CAGGCGATTCAGCGTTATGAGGATGAGCGTGTGAGGCGTCAGGAAGAGCA
GCAAAAGGAGGCAGCAGCCGCAGCCTCTGCTGCCGCGGAAGCGGCCGCGG
CCTGTAAGAAGGCGGAAGCTGACAAAGCGGAAATGCGTAAGAAGTTGGAA
AACTTCATGTCCGTAACCGGAGCCGCTGAGCCGGAGGCGTCCAAGCTGTT
GGGGGGAAGCAACGGCGACCTCGACGCCGCCGTACACAAGTACTTCGACT
CACGTCCATGA
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