mRNA_P-wetherbeei_contig17815.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17815.2.1
Unique NamemRNA_P-wetherbeei_contig17815.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A3D5DEP1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DEP1_9GAMM)

HSP 1 Score: 380 bits (977), Expect = 9.670e-133
Identity = 173/217 (79.72%), Postives = 197/217 (90.78%), Query Frame = 1
Query:    1 MTTPAQIEMVTGAVRYAPGEEVPNVTLKLFALRNQCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVVFVAPSGELLKCDLCGGEPVCVKACSTRPEMLNNGKQYTRLPVLFFEEQAEFNKVTKQKAEKRDEVGMMQAMLERGEISSSA 651
            M T  Q E+VTG   Y PG+E+PNV +KLFALRNQCTECNVCEVAC+LVHSPDG INPQ +R+RIDHAPEKP+R+N +GLGFVAEICHHCGNPPPCA+VCPTDAFYYDP+T AAVI+QDNCIQCMECVPGCPFDVVFVAPSGELLKCDLCGG+PVCVKACSTRPEMLN GKQY R+PVLF+EEQ++FN+++++K   RDEVGMMQAMLE G+ISS A
Sbjct:    1 MDTQPQKELVTGETWYKPGDEIPNVGMKLFALRNQCTECNVCEVACSLVHSPDGEINPQLSRVRIDHAPEKPTRINQEGLGFVAEICHHCGNPPPCAEVCPTDAFYYDPKTLAAVIDQDNCIQCMECVPGCPFDVVFVAPSGELLKCDLCGGDPVCVKACSTRPEMLNKGKQYNRMPVLFYEEQSDFNRISREKPVARDEVGMMQAMLEAGKISSGA 217          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A1Z9UL99_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UL99_9GAMM)

HSP 1 Score: 366 bits (939), Expect = 5.970e-127
Identity = 170/217 (78.34%), Postives = 190/217 (87.56%), Query Frame = 1
Query:    1 MTTPAQIEMVTGAVRYAPGEEVPNVTLKLFALRNQCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVVFVAPSGELLKCDLCGGEPVCVKACSTRPEMLNNGKQYTRLPVLFFEEQAEFNKVTKQKAEKRDEVGMMQAMLERGEISSSA 651
            M++  Q E+VTG  RY    EVPNV  KLF+LRNQCTECNVCEVAC+LVHSPDG +NPQYARL+I+HAP KPS+V+P GLGFVA+ICHHCGNPPPCA+VCPT+AFYYDP+T+AAVIEQDNCIQCMECVPGCPFD VFVAPSGELLKCDLCGG+PVCVKAC+ RPEMLN GKQY RLPVLF+ EQA+FNK  KQ  E  DEVGMMQAMLE G+ISS A
Sbjct:    1 MSSVPQKELVTGVERYPLDAEVPNVVEKLFSLRNQCTECNVCEVACSLVHSPDGTVNPQYARLKINHAPAKPSKVSPGGLGFVADICHHCGNPPPCAEVCPTEAFYYDPKTKAAVIEQDNCIQCMECVPGCPFDTVFVAPSGELLKCDLCGGDPVCVKACAARPEMLNEGKQYVRLPVLFYSEQADFNKEHKQVPEMGDEVGMMQAMLEAGKISSPA 217          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A7Y4U6Y4_9DELT (4Fe-4S dicluster domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4U6Y4_9DELT)

HSP 1 Score: 306 bits (785), Expect = 1.640e-103
Identity = 137/212 (64.62%), Postives = 171/212 (80.66%), Query Frame = 1
Query:   16 QIEMVTGAVRYAPGEEVPNVTLKLFALRNQCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVVFVAPSGELLKCDLCGGEPVCVKACSTRPEMLNNGKQYTRLPVLFFEEQAEFNKVTKQKAEKRDEVGMMQAMLERGEISSSA 651
            Q E+V G   +  G+ +PNV  KLFAL N CT+C +CEVAC+L+HSPDG +NP Y+R++I+H P+  SRVN DG GFV  ICHHCGNPPPCA+VCPTDAFYYDP T AA+I+QD CIQCMECVP CPFDVVFVAP+GELLKCDLCGG+PVCVKACSTRP+ LN GKQY+RLPVLFFE + ++  + ++  E+  E+G+  AML  G++S++A
Sbjct:    6 QKELVNGETWFKVGDLIPNVDKKLFALSNLCTDCKICEVACSLIHSPDGELNPLYSRIKIEHNPQVTSRVNKDGFGFVTAICHHCGNPPPCAEVCPTDAFYYDPVTLAAIIDQDKCIQCMECVPACPFDVVFVAPTGELLKCDLCGGDPVCVKACSTRPDNLNQGKQYSRLPVLFFETKKDYTAIIRKPVEEHKELGLGDAML-AGKVSTAA 216          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A836TQU8_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836TQU8_9PROT)

HSP 1 Score: 142 bits (357), Expect = 2.440e-40
Identity = 68/86 (79.07%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 MTTPAQIEMVTGAVRYAPGEEVPNVTLKLFALRNQCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEI 258
            MT   Q EMVTG+ RY PGEEVPNV  KLFALRNQCTECN CEVACALVHS DG++NPQ ARLRIDHAPEK SR NP G+GFVAEI
Sbjct:    1 MTAIPQKEMVTGSTRYQPGEEVPNVGTKLFALRNQCTECNACEVACALVHSQDGMVNPQMARLRIDHAPEKSSRTNPLGIGFVAEI 86          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A419F5R4_9BACT (4Fe-4S dicluster domain-containing protein n=1 Tax=Candidatus Abyssubacteria bacterium SURF_17 TaxID=2093361 RepID=A0A419F5R4_9BACT)

HSP 1 Score: 124 bits (310), Expect = 2.090e-32
Identity = 60/138 (43.48%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   85 LFALRNQCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVVFVAPSGELLKCDLCGGEPVCVKACSTRPEM 498
            L  + N C  C+ CE+ C+L +S  G+ NP  AR+R+++ P K +  NP        IC HC  P  CA+VCP DA   D  T    ++ + C  C+ CV  CP++ + VAP G +LKCDLCGG P CV+ CS RPEM
Sbjct:    4 LSVVPNLCIGCHECELMCSLKYS--GVFNPALARVRVEYDP-KENCYNP-------VICMHCDEPA-CAEVCPADALARDEATGVVTLDPEKCTLCLACVDACPYNAINVAPDGTILKCDLCGGNPTCVRFCSKRPEM 130          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A3A4N5C7_9BACT (4Fe-4S dicluster domain-containing protein n=1 Tax=Candidatus Abyssubacteria bacterium SURF_5 TaxID=2093360 RepID=A0A3A4N5C7_9BACT)

HSP 1 Score: 123 bits (309), Expect = 5.400e-32
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   64 VPNVTLKLFALRNQCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVVFVAPSGELLKCDLCGGEPVCVKACSTRPEM 498
            +  +  KL  + N CT C  C++ C+L H+  G  NP  AR+RI++  E           +   IC  C  P  CAD CP++AF  D ++ + VI+ + C  C++CV  CP+  + VAP G +LKCDLCGG+P CVK CS RPEM
Sbjct:   12 IGRIMKKLSLVPNLCTGCRECQLMCSLKHA--GRFNPAEARIRIEYDVEMNC--------YSPVICRQCDEPA-CADACPSEAFSRDDRSGSLVIDAEKCSLCLQCVDACPYGAIRVAPDGTVLKCDLCGGDPECVKFCSKRPEM 145          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A7J3BCE5_9ARCH (4Fe-4S dicluster domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J3BCE5_9ARCH)

HSP 1 Score: 108 bits (271), Expect = 2.210e-26
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  100 NQCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGF-VAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFD-VVFVAPSGELLKCDLCGGEPVCVKAC 480
            +QC  C +CE+ C+LV +  G+I+P  AR+R+         V  + LG  V  IC+HC +PP C  VCPT A Y   +T A ++E+  CI C EC+  CPF  ++F    G + KCDLC GEP CV+ C
Sbjct:    4 DQCDGCRLCEMMCSLVKT-GGVISPVKARVRV---------VKMETLGIDVPMICYHCEDPP-CKAVCPTGAIYRSRETDAVLVEESRCIGCRECILACPFGAILFDQSKGVVAKCDLCDGEPACVRIC 121          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A662JAM7_9CREN (4Fe-4S dicluster domain-containing protein n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662JAM7_9CREN)

HSP 1 Score: 103 bits (257), Expect = 2.290e-24
Identity = 58/150 (38.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  103 QCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLG-FVAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVVFVAP-SGELLKCDLCGGEPVCVKACSTR------PEMLNNGKQYTRL 528
            +CT C +CEV C+L H  +  INP  +R+++         V  + +G +V  +C HC +P  C  VCP +A   DP T A VI  D CI C  CV  CP   V V P + +++KCDLCGG P CV+ C T+      P + N  K+ T +
Sbjct:   11 RCTGCRLCEVVCSLYH--EKTINPYRSRIKV---------VKWESVGVYVPMVCQHCESPV-CEAVCPMNAIQRDPNTGAMVINYDRCIGCKMCVLSCPLGGVNVDPKTRKVIKCDLCGGNPQCVRFCETKAVDFLEPTVANLAKRRTAI 148          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A842N8Y7_9DELT (4Fe-4S dicluster domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A842N8Y7_9DELT)

HSP 1 Score: 103 bits (257), Expect = 2.290e-24
Identity = 54/128 (42.19%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  106 CTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVVFVAPSGELLKCDLCGGEPVCVKACSTR 489
            CT C VCE  C+LVH   G  NP  AR+RI        R    G+  +   C  C   P C   CPT A   +P+T A    ++ CIQC  C   CPF    V+P GE+L+CDLCGG+P CVK C  +
Sbjct:   12 CTGCRVCETVCSLVHF--GECNPARARIRI-------MRWETQGID-IPVTCLQCQEAP-CEGSCPTHAIQRNPETGAMETRKELCIQCHMCALACPFGATLVSPEGEVLRCDLCGGDPECVKLCEKK 128          
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Match: A0A3D1FGR6_9FIRM (4Fe-4S ferredoxin n=2 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3D1FGR6_9FIRM)

HSP 1 Score: 103 bits (256), Expect = 3.230e-24
Identity = 52/131 (39.69%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   85 LFALRNQCTECNVCEVACALVHSPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEICHHCGNPPPCADVCPTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVV-FVAPSGELLKCDLCGGEPVCVK 474
            L     +CT C +CE+AC+      G+INP  AR+ +         +  +   F    C HC  P  C DVCPT A   +P+T A VIE+  CI C  C   CPF  + + +P G+ +KCDLCGG+P CVK
Sbjct:    5 LLVEHEKCTACRICELACSARQC--GVINPAKARITV--------AIFLEDNFFFPVTCQHCEEPL-CRDVCPTGAISKNPETGAVVIEESKCIGCRMCSAACPFGAISYCSPDGKAVKCDLCGGDPECVK 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17815.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DEP1_9GAMM9.670e-13379.72Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1Z9UL99_9GAMM5.970e-12778.34Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A7Y4U6Y4_9DELT1.640e-10364.624Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A836TQU8_9PROT2.440e-4079.07Uncharacterized protein (Fragment) n=1 Tax=Sneathi... [more]
A0A419F5R4_9BACT2.090e-3243.484Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A3A4N5C7_9BACT5.400e-3241.384Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A7J3BCE5_9ARCH2.210e-2642.644Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A662JAM7_9CREN2.290e-2438.674Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A842N8Y7_9DELT2.290e-2442.194Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A3D1FGR6_9FIRM3.230e-2439.694Fe-4S ferredoxin n=2 Tax=Firmicutes bacterium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17815contigP-wetherbeei_contig17815:175..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog439235.Dalk_0703
PFAMsFer4_11
Model size654
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.9e-23
EggNOG OGsCOG1142@1|root,COG1142@2|Bacteria,1MWE1@1224|Proteobacteria,42TYZ@68525|delta/epsilon subdivisions,2WQSE@28221|Deltaproteobacteria,2MQ1Z@213118|Desulfobacterales
Description4Fe-4S dicluster domain
Cds size654
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.0783896-CDS-P-wetherbeei_contig17815:174..8281683186128.0783896-CDS-P-wetherbeei_contig17815:174..828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17815 175..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17815.2.1prot_P-wetherbeei_contig17815.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17815 175..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17815.2.1

>prot_P-wetherbeei_contig17815.2.1 ID=prot_P-wetherbeei_contig17815.2.1|Name=mRNA_P-wetherbeei_contig17815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
MTTPAQIEMVTGAVRYAPGEEVPNVTLKLFALRNQCTECNVCEVACALVH
SPDGIINPQYARLRIDHAPEKPSRVNPDGLGFVAEICHHCGNPPPCADVC
PTDAFYYDPQTRAAVIEQDNCIQCMECVPGCPFDVVFVAPSGELLKCDLC
GGEPVCVKACSTRPEMLNNGKQYTRLPVLFFEEQAEFNKVTKQKAEKRDE
VGMMQAMLERGEISSSA*
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mRNA from alignment at P-wetherbeei_contig17815:175..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17815.2.1 ID=mRNA_P-wetherbeei_contig17815.2.1|Name=mRNA_P-wetherbeei_contig17815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig17815:175..828- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCCCCGCGCAGATAGAAATGGTCACTGGCGCTGTGCGCTACGC CCCCGGCGAGGAAGTGCCGAATGTCACGCTGAAGCTGTTCGCGCTGCGCA ATCAATGCACCGAATGCAATGTCTGCGAAGTGGCCTGTGCATTGGTGCAC TCGCCTGACGGCATCATCAACCCCCAATACGCGCGCCTGCGCATCGATCA CGCGCCGGAGAAACCCTCGCGCGTCAATCCCGATGGCCTGGGCTTCGTCG CCGAGATCTGCCATCACTGCGGCAATCCGCCGCCTTGCGCCGATGTCTGT CCGACCGATGCGTTTTACTACGATCCGCAAACCCGCGCGGCGGTCATCGA GCAGGACAACTGTATTCAATGCATGGAATGCGTGCCGGGTTGTCCCTTTG ACGTGGTGTTCGTCGCGCCCAGCGGTGAACTCCTGAAATGCGATCTGTGT GGCGGCGAGCCGGTGTGCGTGAAGGCTTGCTCGACCCGCCCCGAGATGTT GAACAACGGCAAGCAGTATACCCGCCTGCCAGTGCTGTTCTTCGAAGAGC AAGCCGAATTCAACAAGGTGACCAAACAGAAAGCCGAGAAGCGCGACGAG GTCGGCATGATGCAGGCCATGCTCGAGCGCGGCGAAATCAGCAGTTCGGC CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17815:175..828-

>mRNA_P-wetherbeei_contig17815.2.1 ID=mRNA_P-wetherbeei_contig17815.2.1|Name=mRNA_P-wetherbeei_contig17815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig17815:175..828- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCCCCGCGCAGATAGAAATGGTCACTGGCGCTGTGCGCTACGC
CCCCGGCGAGGAAGTGCCGAATGTCACGCTGAAGCTGTTCGCGCTGCGCA
ATCAATGCACCGAATGCAATGTCTGCGAAGTGGCCTGTGCATTGGTGCAC
TCGCCTGACGGCATCATCAACCCCCAATACGCGCGCCTGCGCATCGATCA
CGCGCCGGAGAAACCCTCGCGCGTCAATCCCGATGGCCTGGGCTTCGTCG
CCGAGATCTGCCATCACTGCGGCAATCCGCCGCCTTGCGCCGATGTCTGT
CCGACCGATGCGTTTTACTACGATCCGCAAACCCGCGCGGCGGTCATCGA
GCAGGACAACTGTATTCAATGCATGGAATGCGTGCCGGGTTGTCCCTTTG
ACGTGGTGTTCGTCGCGCCCAGCGGTGAACTCCTGAAATGCGATCTGTGT
GGCGGCGAGCCGGTGTGCGTGAAGGCTTGCTCGACCCGCCCCGAGATGTT
GAACAACGGCAAGCAGTATACCCGCCTGCCAGTGCTGTTCTTCGAAGAGC
AAGCCGAATTCAACAAGGTGACCAAACAGAAAGCCGAGAAGCGCGACGAG
GTCGGCATGATGCAGGCCATGCTCGAGCGCGGCGAAATCAGCAGTTCGGC
CTGA
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