mRNA_P-wetherbeei_contig17806.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17806.2.1
Unique NamemRNA_P-wetherbeei_contig17806.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A5N9GS23_9CHLR (Uncharacterized protein n=1 Tax=SAR202 cluster bacterium TaxID=2030829 RepID=A0A5N9GS23_9CHLR)

HSP 1 Score: 114 bits (286), Expect = 5.740e-30
Identity = 57/133 (42.86%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    1 MWVEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGKLLATIEAEFEVGRASDT-TPRNQRWQFATSIDLSLESAGSYPVVINLNGIEAARQVFEVSVAP 396
            M ++WL+L DAAEVV NKLY+MGGGW+ L V+T FPV++H  VA++V V  +ETN+     ++V +  G+ L  I   FEVGR     T ++Q  + A  +DL+L+  G Y ++ N+NG  + R +F+V   P
Sbjct:    1 MEIQWLMLADAAEVVANKLYIMGGGWEVLTVNTPFPVSRHCSVAIAVRVPWQETNQQSTLDVEVATEFGQTLGKISGHFEVGRPPGIRTGQDQLMKLAVDLDLNLDGPGRYFIIGNVNGQTSTRMMFQVVPGP 133          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A383CML0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383CML0_9ZZZZ)

HSP 1 Score: 114 bits (284), Expect = 1.090e-29
Identity = 58/131 (44.27%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    7 VEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGKLLATIEAEFEVGRASDT-TPRNQRWQFATSIDLSLESAGSYPVVINLNGIEAARQVFEVSVAP 396
            ++WL+L DAAEVV NKLY+MGGGW+ L V+T FPVA+H  VA++V V  +ETN+     ++V +  G+ L  I   FEVGR     T ++Q  + A  +DL+L+  G Y V+ N+NG    R +F+V   P
Sbjct:    3 IQWLMLADAAEVVANKLYIMGGGWEVLTVNTPFPVARHCSVAVAVRVPWQETNQQSTLDVEVATEFGQTLGKITGHFEVGRPPGIRTEQDQLMKLAVDLDLNLDGPGRYFVIGNVNGQANTRMMFQVIPGP 133          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A7W0Z3H1_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0Z3H1_9CHLR)

HSP 1 Score: 102 bits (254), Expect = 3.320e-25
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 MWVEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGKLLATIEAEFEVGRASDTTPRN-QRWQFATSIDLSLESAGSYPVVINLNGIEAARQVFEVSVAP 396
            M VEWLI+ DAAEVVNNKLY+MGGGWD   V+  +P ++   VA S  V   +TN+ H   +D+L  +G  L  +   FEVG+       + QR Q +  ++L+ +  G   +V  + G E  R   +V + P
Sbjct:    1 MEVEWLIVADAAEVVNNKLYMMGGGWDAFFVNDGWPASRRVAVAASFKVPWNQTNQRHRLDIDILDHDGNELGQLGGHFEVGQPLGVPSGHAQRVQLSADLELTFQGPGEVVIVARVEGQELRRTSIQVVLGP 133          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A8B5XFP9_9CHLR (Uncharacterized protein n=1 Tax=Sphaerobacteraceae bacterium TaxID=2099683 RepID=A0A8B5XFP9_9CHLR)

HSP 1 Score: 100 bits (249), Expect = 1.690e-24
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    7 VEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGK-LLATIEAEFEVGR-ASDTTPRNQRWQFATSIDLSLESAGSYPVVINLNGIEAARQVFEV 384
            +EW++L DAA+V NNKLY++GGGW+RL V + FPV Q   +AL+  +   ETN+ H F + V+  +GK +   I   FE GR A      +QR Q A  + ++LE  G Y V + L   E +R  F V
Sbjct:    8 IEWMMLADAAQVTNNKLYVLGGGWERLSVASDFPVRQRASLALAFSIPWAETNQRHGFTVRVVDEDGKDVHGAINGHFETGRPAGLAAGADQRVQVAIDLTMTLEREGVYVVEVTLAEQETSRTTFSV 135          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A1F8LJW6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_13_46_14 TaxID=1797618 RepID=A0A1F8LJW6_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 2.650e-23
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    1 MWVEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGKL-----LATIEAEFEVGRASDTTP-RNQRWQFATSIDLSLESAGSYPVVINLNGIEAARQVFEV 384
            M +EWLIL D+A+VV NKLYL+GGGWD L +    P  Q  G+AL+V V    TN+ H F ++ +S + +      +A    + EVGR       ++QR Q A +I L + SAG+  VV  ++G E  R  F V
Sbjct:    1 MEIEWLILADSAQVVGNKLYLLGGGWDILSIRQKLPSNQPCGIALAVKVPWNNTNEKHNFEIEFVSEDQETEEPHSMAKFGGQLEVGRPPGIQRGQDQRVQLAVNIGLQITSAGTKIVVARIDGTELKRITFNV 134          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A359KNP9_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A359KNP9_9CHLR)

HSP 1 Score: 97.8 bits (242), Expect = 2.660e-23
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    7 VEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEG-KLLATIEAEFEVGR---ASDTTPRNQRWQFATSIDLSLESAGSYPVVINLNGIEAARQVFEV 384
            ++W++L DAA++VN KLY++GGGWD L+V + FPV Q  G+A++  +    TN      + V+  EG   +AT + +F+VGR     D  P  QR Q A  + LS   AG+Y V+++++  E  R  F V
Sbjct:   10 LDWVMLADAAQIVNGKLYVLGGGWDTLVVSSPFPVNQPCGLAIAFRIPGAGTNPRKTARIQVVDQEGTSTIATADVQFQVGRPPEVDDVLP--QRVQLAAGLHLSFPKAGTYVVIVSVDNAEIGRSRFRV 137          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A535EF56_9CHLR (Lactate utilization protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535EF56_9CHLR)

HSP 1 Score: 89.7 bits (221), Expect = 3.160e-18
Identity = 52/134 (38.81%), Postives = 71/134 (52.99%), Query Frame = 1
Query:    1 MWVEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGKL-LATIEAEFEVGRASDTTPRN-QRWQFATSIDLSLESAGSYPVVINLNGIEAARQVFEVSVAP 396
            M +++L+L D AE VN KLYLMGGGWDR+ +   FP    F VAL V+V   ETN+ HEF   +   + ++ L  +  +FE+GR     P   QR+  A      +  AG Y  V+ L+G  A R  F     P
Sbjct:  390 MDLDFLLLADRAEAVNGKLYLMGGGWDRITL-PQFPAPASFDVALGVMVAYTETNERHEFHFTLEDDDNQVVLGPVTGQFELGRPPGLKPAQAQRFMVAVRGPFPVPHAGCYHWVVALDGRRAGRTTFWADPVP 522          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A6I1QRY7_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I1QRY7_9CHLR)

HSP 1 Score: 85.1 bits (209), Expect = 4.380e-18
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    7 VEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGKLLATIEAEFEVGR-ASDTTPRNQRWQFATSIDLSLESAGSYPVVINLNGIEAARQVFEVSVA 393
            +++LI+ DAA++ NNKLY+MGGGW++L V+T  P   + G+A+ V V   ETN   +  L V   +GK L  +E +FE GR A      +Q  Q A +  +     GSY ++  ++G E  R  F VS A
Sbjct:   42 IDYLIVADAAQIANNKLYVMGGGWNQLRVNT-LPADVNIGLAVGVRVDWNETNVRRKLELLVHDSDGKQLMRVEGQFETGRPAGIPQGSSQLIQVAANGRVQFPDVGSYLLLAVVDGDELQRVPFYVSEA 170          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A177Q3U1_9BACT (Uncharacterized protein n=1 Tax=bacterium SCGC AG-212-C10 TaxID=1799370 RepID=A0A177Q3U1_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 9.770e-14
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 MWVEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGKLLATIEAEFEVGRASDTTP-RNQRWQFATSIDLSLESAGSY 330
            M +E+ +L D AE+V NKLY+MGGGWD      A P      +A+ V V  EETN+     + +   +G+ L  IE    VGR ++  P  +Q  Q A ++ L++ + G Y
Sbjct:    1 MQIEYALLADYAEIVGNKLYVMGGGWDTFAAPEA-PAFVRLAIAVGVRVPWEETNQQIPIHVAIEDDDGRELGRIEGSVMVGRPAELPPGSSQLAQMAANVPLTVPAFGGY 110          
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Match: A0A7Z1TSF9_9BACT (Uncharacterized protein n=1 Tax=Holophagae bacterium TaxID=2073116 RepID=A0A7Z1TSF9_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 2.130e-13
Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    1 MWVEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVTPEETNKPHEFALDVLSPEGKLLATIEAEFEVGRASDTTP-RNQRWQFATSIDLSLESAGSYPV-VINLNGIEAARQ 372
            M +++ IL D AEVV NKLYLMGGGWD +      P      +A  V V  EETN P    + +   + + +  +EA+  VGR  +      Q  Q A ++ +SL   G Y V V+   G +A R+
Sbjct:    1 MEIDYAILADHAEVVGNKLYLMGGGWDTMNAADV-PAPVRLAIANGVRVEWEETNVPIPLLITIEDDDAQEIVRMEAQLNVGRPPNLPAGATQLSQMAATVQVSLPRFGGYRVLVVAGTGEQAVRR 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17806.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N9GS23_9CHLR5.740e-3042.86Uncharacterized protein n=1 Tax=SAR202 cluster bac... [more]
A0A383CML0_9ZZZZ1.090e-2944.27Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7W0Z3H1_9CHLR3.320e-2538.35Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A8B5XFP9_9CHLR1.690e-2441.41Uncharacterized protein n=1 Tax=Sphaerobacteraceae... [more]
A0A1F8LJW6_9CHLR2.650e-2340.30Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A359KNP9_9CHLR2.660e-2338.46Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A535EF56_9CHLR3.160e-1838.81Lactate utilization protein n=1 Tax=Chloroflexi ba... [more]
A0A6I1QRY7_9CHLR4.380e-1838.46Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A177Q3U1_9BACT9.770e-1436.04Uncharacterized protein n=1 Tax=bacterium SCGC AG-... [more]
A0A7Z1TSF9_9BACT2.130e-1335.71Uncharacterized protein n=1 Tax=Holophagae bacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17806contigP-wetherbeei_contig17806:197..610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog469383.Cwoe_3112
Model size414
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.22e-06
EggNOG OGs2E3FZ@1|root,32YET@2|Bacteria,2IGAC@201174|Actinobacteria
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.8004243-CDS-P-wetherbeei_contig17806:196..6101683186127.8004243-CDS-P-wetherbeei_contig17806:196..610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17806 197..610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17806.2.1prot_P-wetherbeei_contig17806.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17806 197..610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17806.2.1

>prot_P-wetherbeei_contig17806.2.1 ID=prot_P-wetherbeei_contig17806.2.1|Name=mRNA_P-wetherbeei_contig17806.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MWVEWLILGDAAEVVNNKLYLMGGGWDRLMVHTAFPVAQHFGVALSVVVT
PEETNKPHEFALDVLSPEGKLLATIEAEFEVGRASDTTPRNQRWQFATSI
DLSLESAGSYPVVINLNGIEAARQVFEVSVAPPDPVE*
back to top

mRNA from alignment at P-wetherbeei_contig17806:197..610-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17806.2.1 ID=mRNA_P-wetherbeei_contig17806.2.1|Name=mRNA_P-wetherbeei_contig17806.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig17806:197..610- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGTTGAATGGCTGATTCTCGGCGACGCCGCCGAAGTGGTAAACAA CAAGCTCTATCTGATGGGCGGCGGTTGGGACCGACTGATGGTGCACACCG CTTTTCCCGTGGCACAGCATTTCGGGGTCGCGCTTTCTGTAGTGGTAACC CCTGAAGAGACGAACAAGCCTCACGAGTTTGCTCTCGATGTCCTCAGCCC CGAGGGCAAGCTGTTGGCCACGATCGAGGCGGAGTTTGAAGTTGGGCGCG CTTCCGATACGACCCCACGTAACCAACGCTGGCAGTTCGCGACCTCTATC GACCTCTCGCTGGAATCGGCGGGTTCCTATCCCGTCGTCATCAATTTGAA TGGCATCGAAGCTGCCCGTCAGGTCTTCGAGGTCTCTGTTGCTCCTCCGG ATCCGGTCGAGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17806:197..610-

>mRNA_P-wetherbeei_contig17806.2.1 ID=mRNA_P-wetherbeei_contig17806.2.1|Name=mRNA_P-wetherbeei_contig17806.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig17806:197..610- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGTTGAATGGCTGATTCTCGGCGACGCCGCCGAAGTGGTAAACAA
CAAGCTCTATCTGATGGGCGGCGGTTGGGACCGACTGATGGTGCACACCG
CTTTTCCCGTGGCACAGCATTTCGGGGTCGCGCTTTCTGTAGTGGTAACC
CCTGAAGAGACGAACAAGCCTCACGAGTTTGCTCTCGATGTCCTCAGCCC
CGAGGGCAAGCTGTTGGCCACGATCGAGGCGGAGTTTGAAGTTGGGCGCG
CTTCCGATACGACCCCACGTAACCAACGCTGGCAGTTCGCGACCTCTATC
GACCTCTCGCTGGAATCGGCGGGTTCCTATCCCGTCGTCATCAATTTGAA
TGGCATCGAAGCTGCCCGTCAGGTCTTCGAGGTCTCTGTTGCTCCTCCGG
ATCCGGTCGAGTAA
back to top