mRNA_P-wetherbeei_contig17804.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17804.1.1
Unique NamemRNA_P-wetherbeei_contig17804.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: D7FV94_ECTSI (ANAPC4_WD40 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV94_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 3.170e-78
Identity = 126/239 (52.72%), Postives = 165/239 (69.04%), Query Frame = 1
Query:   13 MAVHRCRFTEWMPSAVHALAARPDGLILAVGREDGDIEIVLPAESWRIERRVPGREGRSLTALVW-----------GREKAGGSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLER-QGGHTLVWALKVLTDGTVVTGDSLGHVQFWDGATGTQ 693
            MAV+  +   W P AVHALA RPD  ++AVGREDGD+E+ +P+E +R+E RVPG++ + L +L W           G ++   +  RLFGCGLDG ++E DL RL   +VR++YGGA WCM  +    LLA+GC+DGSV+LFS EGGG+EY ++FP+T  RVL +AW   +  IFAG  D  + C DATTG +LFDMRLER +    +VWAL+ L+DGTVV+GDS G VQ WDG TGTQ
Sbjct:    8 MAVNLSKLQVWTPQAVHALATRPDSKVVAVGREDGDVELTVPSEGYRVEARVPGQKNKGLRSLAWIGGTGGDGGVEGDDEGSTAIARLFGCGLDGTVFEVDLLRLCYKNVRDAYGGAAWCMRPAAPLGLLAVGCEDGSVRLFSTEGGGVEYKRSFPSTGSRVLCLAWGPANDVIFAGCLDSMIHCLDATTGQTLFDMRLERGRKEDAIVWALEALSDGTVVSGDSCGRVQVWDGLTGTQ 246          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: A0A835YSL7_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL7_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.540e-70
Identity = 114/217 (52.53%), Postives = 154/217 (70.97%), Query Frame = 1
Query:   46 MPSAVHALAARPDGLILAVGREDGDIEIVLPAESWRIERRVPGREGRSLT-ALVWGREKAGGSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLERQGGH-TLVWALKVLTDGTVVTGDSLGHVQFWDGATGT 690
            MP AVHA+A +P G ++AVGR DGDIE+++P+E++ + +R+PG+ G+ L  AL W     G    RL GCGLDG L+EADL +L   +VRE+YGG  W +  +   P+ A+GCDDG++KLFS EG G+EY++TFPTT  RVLSVAW+ D + +FAG AD  +R F A +G  L+ M +E  G   T+VWAL  L+DGT+V+GDSLGH+Q WD  TGT
Sbjct:    1 MPRAVHAIAPQPGGALVAVGRNDGDIELMVPSENYSVLKRIPGKSGKHLQQALAWCAGDMG--QHRLIGCGLDGFLFEADLTKLQLTNVRETYGGPAWSLAIAPHAPIAAVGCDDGAIKLFSLEGDGIEYARTFPTTGSRVLSVAWACDAQVVFAGSADSHIRAFAARSGQVLYHMAVEAYGTEPTMVWALCALSDGTLVSGDSLGHIQVWDIQTGT 215          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: A0A1X2HNM8_SYNRA (WD40-repeat-containing domain protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HNM8_SYNRA)

HSP 1 Score: 197 bits (500), Expect = 3.640e-55
Identity = 106/250 (42.40%), Postives = 146/250 (58.40%), Query Frame = 1
Query:   13 MAVHRCRFTEWMPSAVHALAARPDGLI---LAVGREDGDIEIVLPAESWRIERRVPGREGRSLTALVWGREKAG--------------------GSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLERQGG-HTLVWALKVLTDGTVVTGDSLGHVQFWDGATGT 690
            M VHRCRF ++ P+AV+AL   P+ +    LAVGR +GDIEI  P  +WR+E+ +PG +  S+ +LVW  ++                        P RLF  GL   + E DL  +      +S GGAVWC+  ++    LA GCDDG ++LF+   G LEY +TF   N R+LSVAW  +D  I +GG+D  VR +DA TG +L  M +++  G HTLVWA+  L +G +V+GDSLGH+ FWDG  GT
Sbjct:    1 MEVHRCRFIDYQPAAVNALDYTPESVANTRLAVGRANGDIEIWDPKFNWRLEKTIPGGQDLSVESLVWAHQQLSQDDLDSFSEHERETVKARHAAQPPRLFSSGLSPYIVEWDLTSMTVKRSVDSNGGAVWCLAVNKKGTKLAAGCDDGRIRLFNIGFGELEYVRTFEPQNGRILSVAWGPNDDYIVSGGSDSSVRKWDAHTGRALHRMTVDKTAGEHTLVWAVLALENGMIVSGDSLGHLMFWDGKRGT 250          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: A0A225WRV4_9STRA (U3 small nucleolar RNA-associated protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WRV4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.900e-54
Identity = 97/231 (41.99%), Postives = 136/231 (58.87%), Query Frame = 1
Query:    1 IMVAMAVHRCRFTEWMPSAVHALAARPDGLILAVGREDGDIEIVLPAESWRIERRVPGREGRSLTALVWGREKAGGSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLERQGGH-TLVWALKVLTDGTVVTGDSLGHVQFWDGATGT 690
            ++  + VHRCRF +WMP+AVHAL+    G  LAV R +GD+E+   +  W ++  V G   RS++AL W   +      RLF   LDG LWE D   L+  HV +S GG +W M    S   LA+GC+DG ++LFS+    L +SK F TT  RV+S+AW      IF+G   G + C+DA TG +   + L+    H  +VW+L VL D T+V+GDS G++ FW+  TGT
Sbjct:   15 VVTTLQVHRCRFVDWMPAAVHALSFSASGDELAVARANGDVELWHVSSKWHLQLVVSGSSQRSISALCWSENR------RLFASSLDGTLWEIDWETLSRKHVADSNGGPIWSMVLDSSSQQLAVGCEDGRIRLFSFADDQLHFSKAFLTTGSRVVSLAWHGAAHKIFSGSEAGVIHCWDAVTGRNESRITLDNLAKHKAIVWSLVVLDDLTLVSGDSTGNLSFWNAPTGT 239          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: A0A1Y2GPN5_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GPN5_9FUNG)

HSP 1 Score: 193 bits (490), Expect = 2.220e-53
Identity = 101/250 (40.40%), Postives = 147/250 (58.80%), Query Frame = 1
Query:   13 MAVHRCRFTEWMPSAVHALAARPDGL--ILAVGREDGDIEIVLPAESWRIERRVPGREGRSLTALVWG---------------REKAGG------SPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLERQGGH-TLVWALKVLTDGTVVTGDSLGHVQFWDGATGT 690
            M VHRCRF +++PSA++AL+  P+    ILA GR +GDIE+  P   W +E+ +PG +  S+ AL W                REK         +P RLF  GL+  + E DL  L P    +S+GGAVWCM  + +  +LA+GC+DG V+LF    G L + ++F     R+LS+AWS DD+ +  G A+  +  +D   G  +  M ++R  G  TLVW++KVL++G +V+GDSLGHV+FWDG+  T
Sbjct:    1 MEVHRCRFVDYIPSAINALSFAPNTTRPILACGRANGDIEVWNPKHEWTLEKVIPGGKNTSVEALAWAHQTILTEDEDFWDSEREKQAAIKKLIKTPPRLFSAGLNAVVTEWDLTTLKPKRSVDSHGGAVWCMATNHANTILAVGCEDGCVRLFDIADGELAFIRSFDKQKTRILSLAWSQDDKHMVTGSANSSIYKWDVEAGRVVSRMTVDRVSGEDTLVWSVKVLSNGVIVSGDSLGHVKFWDGSNTT 250          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: A0A197JTP9_9FUNG (WD40 repeat-like protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JTP9_9FUNG)

HSP 1 Score: 192 bits (487), Expect = 4.950e-53
Identity = 99/234 (42.31%), Postives = 145/234 (61.97%), Query Frame = 1
Query:   13 MAVHRCRFTEWMPSAVHALAARPDGL--ILAVGREDGDIEIVLPAESWRIERRVPGREGRSLTALVWGREKAG-----GSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLERQGGH-TLVWALKVLTDGTVVTGDSLGHVQFWDGATGT 690
            M VHRCRF +++PSAV+ALA  P+    +LA GR +GDIE+  P   W +E+ +PG +  S+ A+    ++A       +P RLF  GL+  + E DL  L P    +S+GGAVWCM A+ +  +LA+GC+DG V+LF    G   + ++F     R+LS+AWS DD+ +  G A+  +  +D   G  +  M +ER  G  TLVWA+K+L+ G +V+GDSLGHV+ WDG+T T
Sbjct:    1 MEVHRCRFVDYVPSAVNALAFAPNTTRPVLACGRANGDIELWNPKHDWTLEKVIPGGKNTSVEAISEKEKQAAIKKLTKTPPRLFSAGLNAVVTEWDLTSLKPKRSVDSHGGAVWCMAANNANTVLAVGCEDGCVRLFDIADGEFTFIRSFDKQRTRILSLAWSQDDKIMVTGSANSSIYKWDVEQGRVVTRMTVERVPGEDTLVWAVKILSTGDIVSGDSLGHVKIWDGSTTT 234          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: W7T5Z3_9STRA (Cirhin n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T5Z3_9STRA)

HSP 1 Score: 192 bits (488), Expect = 6.680e-53
Identity = 105/231 (45.45%), Postives = 141/231 (61.04%), Query Frame = 1
Query:   19 VHRCRFTEWMPSAVHALAARPDGLILAVGREDGDIEIVLPAESWRIERRVPGREGRSLT-ALVWGREKAGGSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSA-----DDRAIFAGGADGRVRCFDATTGVSLFDMRLE-RQGGHT-LVWALKVLTDGTVVTGDSLGHVQFWDGATG 687
            +HRCRF +W P A+  +AA   G +LAV RE G++EI L  E +R+   VP   G  L  ++ W R+ +  S  RLF   LD  ++E D+  L     ++SYGG VWC+ A   + LLA+GC+DGSVKLFS    G E+S+  PT N R+LS+AW A     D  ++F G  DG +R  DA TG S + M +E +   H  LVW+L  L+DGT+V+GDSLG V FWDGA G
Sbjct:   72 IHRCRFLDWEPRAIVCMAACASGRMLAVARESGEVEIRLVDEKFRVAGVVPVPGGNGLIRSMTWSRQVSE-SQGRLFVGSLDTSVFEIDVPGLRVRRRQDSYGGPVWCLAADPHRDLLAVGCEDGSVKLFSTADQGFEFSRALPTVNSRILSMAWQAPPSPRDSPSLFVGAVDGTIRHLDARTGHSAYRMTVEAKNSAHPPLVWSLLALSDGTLVSGDSLGAVHFWDGAMG 301          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: A0A7S3MEG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEG6_9STRA)

HSP 1 Score: 188 bits (477), Expect = 3.320e-52
Identity = 106/263 (40.30%), Postives = 145/263 (55.13%), Query Frame = 1
Query:    1 IMVAMAVHRCRFTEWMPSAVHALAARPDGLILAVGREDGDIEIVLPAESWRIERRVPGREGRSLTALVWG--REKAGGSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYE------------------------------GGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLE--RQGGHTLVWALKVLTDGTVVTGDSLGHVQFWDGATG 687
            IM    VHR R  +W+P A+ +LA  P    +AVGRE+GDIEI   +  W  + R+PG +   L +LVW   +E++G    RLFG  L G ++E DL++L   ++R++YGG  W +  S   P LA+GC+DG ++LF YE                               G LEY K+ PT+  R+L +A+   ++ IFAG +DG VRC D  TG  LF M  +  R    TL+W+L VL D TV+TGDS G VQ WDGA G
Sbjct:    8 IMGDFNVHRLRIGDWVPCAIKSLAVDPFSSKVAVGRENGDIEICDASNKWYCQARIPGMKDFKLQSLVWSSVKEQSG----RLFGVSLRGFVFEVDLKQLRINNIRDTYGGTAWSLHPSPRAPQLAVGCEDGVIRLFRYELGAEDNINAVLGTGSYLEDAPSSSGSNKGSSGVLEYHKSLPTSGSRILCLAYHPSEKTIFAGCSDGSVRCMDEDTGRVLFRMLGDVLRGSVSTLIWSLLVLPDSTVITGDSRGQVQVWDGAAG 266          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: K3X601_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X601_GLOUD)

HSP 1 Score: 189 bits (479), Expect = 3.470e-52
Identity = 91/228 (39.91%), Postives = 136/228 (59.65%), Query Frame = 1
Query:   10 AMAVHRCRFTEWMPSAVHALAARPDGLILAVGREDGDIEIVLPAESWRIERRVPGREGRSLTALVWGREKAGGSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLERQGGHT-LVWALKVLTDGTVVTGDSLGHVQFWDGATGT 690
            ++ VHRCRF +WMP A+H+++  P G  LAV R +GDIEI      W +   + G E   ++A+ W +        RLF   LDG LWE D + L   H+ +S GG +WCM+ +     LA+GC+DG ++LFS++   L + K F TT  RV+S+AW A    +F+G  DG + C++AT+G +   + LE       +VW+L VL + T+V+GDS G++ FW+G T T
Sbjct:   34 SLKVHRCRFLDWMPHAIHSMSFDPRGTQLAVARSNGDIEIWQVDRKWHLRFVINGSEHAKISAMQWSQSN------RLFVASLDGTLWEVDFQLLKKKHITDSNGGPIWCMEINNGSETLAVGCEDGRIRLFSFQNDDLYFQKGFITTGRRVVSLAWHAASNKMFSGSEDGIIHCWNATSGRNESRITLESLAKQKCVVWSLLVLDNLTIVSGDSHGNLSFWNGHTST 255          
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Match: A0A2P4YCM4_9STRA (U3 small nucleolar RNA-associated protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCM4_9STRA)

HSP 1 Score: 187 bits (475), Expect = 6.520e-52
Identity = 93/231 (40.26%), Postives = 132/231 (57.14%), Query Frame = 1
Query:    1 IMVAMAVHRCRFTEWMPSAVHALAARPDGLILAVGREDGDIEIVLPAESWRIERRVPGREGRSLTALVWGREKAGGSPWRLFGCGLDGCLWEADLRRLAPVHVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTTNVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLERQGGH-TLVWALKVLTDGTVVTGDSLGHVQFWDGATGT 690
            +   + VHRCRF +WMP+A+HAL+    G  LAV R +GD+E+      W ++  V G     +TAL W          RLF C LDG LWE +   L+  +V +S GG +W M    +   LA+GC+DG ++LFS+    L +SK F TT  RV+S+AW      IF+G   G + C++A TG +   + LE    H  +VW+L VL D T+V+GDS G++ FW+  TGT
Sbjct:   15 VATTLQVHRCRFVDWMPAAIHALSFNAAGDQLAVARANGDVELWSVGRKWHLKFVVSGSSQSQVTALCWSESS------RLFACSLDGTLWEMNFETLSKKNVVDSNGGPIWSMVLDAASQQLAVGCEDGRIRLFSFADDQLHFSKAFLTTGTRVVSLAWHGTAHKIFSGSEAGVIHCWNAVTGRNESRITLENLAKHKAIVWSLVVLDDLTLVSGDSTGNLSFWNAPTGT 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17804.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV94_ECTSI3.170e-7852.72ANAPC4_WD40 domain-containing protein n=2 Tax=Ecto... [more]
A0A835YSL7_9STRA1.540e-7052.53Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A1X2HNM8_SYNRA3.640e-5542.40WD40-repeat-containing domain protein n=1 Tax=Sync... [more]
A0A225WRV4_9STRA2.900e-5441.99U3 small nucleolar RNA-associated protein n=1 Tax=... [more]
A0A1Y2GPN5_9FUNG2.220e-5340.40WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]
A0A197JTP9_9FUNG4.950e-5342.31WD40 repeat-like protein n=1 Tax=Linnemannia elong... [more]
W7T5Z3_9STRA6.680e-5345.45Cirhin n=3 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
A0A7S3MEG6_9STRA3.320e-5240.30Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K3X601_GLOUD3.470e-5239.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4YCM4_9STRA6.520e-5240.26U3 small nucleolar RNA-associated protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17804contigP-wetherbeei_contig17804:3..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FV94
Preferred nameCIRH1A
PFAMsWD40
Model size693
Max annot lvl2759|Eukaryota
KEGG koko:K06171,ko:K14548
KEGG Pathwayko03008,ko04330,ko05010,map03008,map04330,map05010
KEGG ModuleM00682
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000462,GO:0001650,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010015,GO:0010051,GO:0010073,GO:0010101,GO:0010102,GO:0010154,GO:0010305,GO:0010311,GO:0010449,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010817,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022414,GO:0022613,GO:0022622,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0035266,GO:0040007,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048316,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048518,GO:0048522,GO:0048527,GO:0048528,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1905392,GO:1905393,GO:1990904,GO:2000012,GO:2000112,GO:2001141
Exons2
Evalue5e-79
EggNOG OGsKOG2048@1|root,KOG2048@2759|Eukaryota
Descriptionmaturation of SSU-rRNA
Cds size690
COG categoryS
BRITEko00000,ko00001,ko00002,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.7088144-CDS-P-wetherbeei_contig17804:2..291683186127.7088144-CDS-P-wetherbeei_contig17804:2..29Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17804 3..29 -
1683186127.7279239-CDS-P-wetherbeei_contig17804:563..12261683186127.7279239-CDS-P-wetherbeei_contig17804:563..1226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17804 564..1226 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.7394576-UTR-P-wetherbeei_contig17804:1226..12291683186127.7394576-UTR-P-wetherbeei_contig17804:1226..1229Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17804 1227..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17804.1.1prot_P-wetherbeei_contig17804.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17804 3..1226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17804.1.1

>prot_P-wetherbeei_contig17804.1.1 ID=prot_P-wetherbeei_contig17804.1.1|Name=mRNA_P-wetherbeei_contig17804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=230bp
MVAMAVHRCRFTEWMPSAVHALAARPDGLILAVGREDGDIEIVLPAESWR
IERRVPGREGRSLTALVWGREKAGGSPWRLFGCGLDGCLWEADLRRLAPV
HVRESYGGAVWCMDASRSQPLLAIGCDDGSVKLFSYEGGGLEYSKTFPTT
NVRVLSVAWSADDRAIFAGGADGRVRCFDATTGVSLFDMRLERQGGHTLV
WALKVLTDGTVVTGDSLGHVQFWDGATGTQ
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mRNA from alignment at P-wetherbeei_contig17804:3..1229-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17804.1.1 ID=mRNA_P-wetherbeei_contig17804.1.1|Name=mRNA_P-wetherbeei_contig17804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1227bp|location=Sequence derived from alignment at P-wetherbeei_contig17804:3..1229- (Phaeothamnion wetherbeei SAG_119_79)
ATCATGGTGGCGATGGCGGTTCATCGCTGCAGATTCACGGAATGGATGCC TTCAGCGGTTCACGCCCTCGCAGCGCGGCCAGATGGCCTTATCCTGGCGG TGGGCCGCGAGGACGGCGACATCGAAATCGTCCTCCCGGCGGAGAGCTGG AGAATAGAGCGGCGCGTGCCCGGAAGAGAAGGGCGTTCGCTGACGGCGCT CGTCTGGGGCCGTGAAAAAGCCGGTGGCAGCCCATGGCGGCTCTTCGGGT GCGGTCTGGATGGCTGCTTGTGGGAGGCAGATCTGCGGCGCCTCGCGCCG GTCCACGTCCGCGAGTCGTACGGCGGCGCCGTCTGGTGCATGGACGCGTC GCGCTCGCAGCCTTTGCTGGCCATCGGGTGCGACGACGGCTCCGTCAAGC TCTTCAGCTACGAGGGTGGCGGCCTCGAGTACTCCAAAACCTTCCCGACC ACCAACGTCCGGGTGCTCTCCGTGGCTTGGTCGGCAGATGACCGCGCCAT CTTCGCTGGCGGCGCGGACGGCCGCGTGCGATGCTTCGACGCGACCACCG GCGTGAGCCTCTTTGACATGCGGTTGGAGCGGCAGGGCGGCCACACACTT GTGTGGGCGCTCAAGGTCCTCACGGACGGCACCGTCGTCACGGGCGACTC CCTCGGCCACGTCCAGGTGAGCGCTGCGGCGCGGTGTGGTGCAGCGTCAT TGCGTGATGTGGAGCTTTCTTTTGGTTCGGTGTTTGCAATTTATCTCGTC TTTGTTTGCTCCTTTGCCGCCGTAAACATGCATTGTCAGCCTGCATCATT CATCGAATGCCTCTAACATCCTTATTTATGGGTAAATGTTTCTTAGACTT GATTGGCTGCCTGCCTTTACTTGAGGTGTGAGGTCGTCTTGGTGGTTTAC GCTTCTTTTAACCTCGTCACCTTCTCGACCTTTCACCGGCGGTTGTCATA TTATAAGGCTGGACATAATTTTCTGACGCTTGTGTAGCCTGGATTTCGAA TGAAAGGGCTTTAGGCAGGGTCCACCCAGTGTGCCATTCTAGCCAGCTTT TCGATGACTATCGAATTATTCCATTTTCATTCCTCTCGCCTGCCTTCCGC ACGCCTGCCTCTGAGTTCATGTTCCTCATTATATTGCTACTTCTTTTTTT TCGCCTCTCTCTTCTCCCATTTTGTCTGCCACAACTCTGCTGCAATATAG TTTTGGGACGGCGCGACAGGCACGCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17804:3..1229-

>mRNA_P-wetherbeei_contig17804.1.1 ID=mRNA_P-wetherbeei_contig17804.1.1|Name=mRNA_P-wetherbeei_contig17804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig17804:3..1229- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGATGGCGGTTCATCGCTGCAGATTCACGGAATGGATGCCTTC
AGCGGTTCACGCCCTCGCAGCGCGGCCAGATGGCCTTATCCTGGCGGTGG
GCCGCGAGGACGGCGACATCGAAATCGTCCTCCCGGCGGAGAGCTGGAGA
ATAGAGCGGCGCGTGCCCGGAAGAGAAGGGCGTTCGCTGACGGCGCTCGT
CTGGGGCCGTGAAAAAGCCGGTGGCAGCCCATGGCGGCTCTTCGGGTGCG
GTCTGGATGGCTGCTTGTGGGAGGCAGATCTGCGGCGCCTCGCGCCGGTC
CACGTCCGCGAGTCGTACGGCGGCGCCGTCTGGTGCATGGACGCGTCGCG
CTCGCAGCCTTTGCTGGCCATCGGGTGCGACGACGGCTCCGTCAAGCTCT
TCAGCTACGAGGGTGGCGGCCTCGAGTACTCCAAAACCTTCCCGACCACC
AACGTCCGGGTGCTCTCCGTGGCTTGGTCGGCAGATGACCGCGCCATCTT
CGCTGGCGGCGCGGACGGCCGCGTGCGATGCTTCGACGCGACCACCGGCG
TGAGCCTCTTTGACATGCGGTTGGAGCGGCAGGGCGGCCACACACTTGTG
TGGGCGCTCAAGGTCCTCACGGACGGCACCGTCGTCACGGGCGACTCCCT
CGGCCACGTCCAGTTTTGGGACGGCGCGACAGGCACGCAA
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