mRNA_P-wetherbeei_contig17801.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17801.1.1
Unique NamemRNA_P-wetherbeei_contig17801.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17801.1.1 vs. uniprot
Match: A0A539DVP4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DVP4_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 2.270e-17
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 SVGSDGISTGGGFNLGVASGSATFDDDDGFHVGGSAGIDFGPLPFVEGHIDVAPDGGISIGGELQGVLP 207
            SVG +G S   GF++G+ASG  ++D+ DGF   GS G+++GPLP+ EGHI+++PDG ISIGG LQG LP
Sbjct:  131 SVGQNGFSAEAGFDIGIASGEMSYDESDGFAASGSLGVNWGPLPYAEGHIELSPDGEISIGGHLQGTLP 199
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BLAST of mRNA_P-wetherbeei_contig17801.1.1 vs. uniprot
Match: A0A3C2BAD8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2BAD8_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 1.060e-12
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 SVGSDGISTGGGFNLGVASGSATFDDDDGFHVGGSAGIDFGPLPFVEGHIDVAPDGGISIGGELQGVLP 207
            S G DG       NLG+  G  ++D+DDGF  G +AG+D   LP+VEGH+D++P+G I++GGE Q  +P
Sbjct:  181 SYGDDGFQGAAELNLGIVGGHLSYDNDDGFSAGVNAGLDMEGLPYVEGHVDISPEGDIAVGGEFQATIP 249
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BLAST of mRNA_P-wetherbeei_contig17801.1.1 vs. uniprot
Match: A0A7X9Q300_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9Q300_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 5.440e-7
Identity = 20/35 (57.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  103 SAGIDFGPLPFVEGHIDVAPDGGISIGGELQGVLP 207
            SAG+D+GPLP+ EGH++V+ +G IS+GG++QG +P
Sbjct:  140 SAGVDWGPLPYAEGHVEVSENGDISVGGQVQGTIP 174
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BLAST of mRNA_P-wetherbeei_contig17801.1.1 vs. uniprot
Match: A0A3C1L4C8_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L4C8_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 9.820e-7
Identity = 20/35 (57.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  103 SAGIDFGPLPFVEGHIDVAPDGGISIGGELQGVLP 207
            SAG+D+GPLP+ EGH++V+ +G IS+GG++QG +P
Sbjct:  150 SAGVDWGPLPYAEGHVEVSENGDISVGGQVQGTIP 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A539DVP4_9ACTN2.270e-1756.52Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3C2BAD8_9ACTN1.060e-1246.38Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X9Q300_9ACTN5.440e-757.14Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A3C1L4C8_9ACTN9.820e-757.14Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17801contigP-wetherbeei_contig17801:5..211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size207
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.6307614-CDS-P-wetherbeei_contig17801:4..2111683186127.6307614-CDS-P-wetherbeei_contig17801:4..211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17801 5..211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17801.1.1prot_P-wetherbeei_contig17801.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17801 5..211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17801.1.1

>prot_P-wetherbeei_contig17801.1.1 ID=prot_P-wetherbeei_contig17801.1.1|Name=mRNA_P-wetherbeei_contig17801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
SVGSDGISTGGGFNLGVASGSATFDDDDGFHVGGSAGIDFGPLPFVEGHI
DVAPDGGISIGGELQGVLP
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mRNA from alignment at P-wetherbeei_contig17801:5..211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17801.1.1 ID=mRNA_P-wetherbeei_contig17801.1.1|Name=mRNA_P-wetherbeei_contig17801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig17801:5..211+ (Phaeothamnion wetherbeei SAG_119_79)
TCGGTCGGCAGCGACGGGATCAGCACCGGCGGCGGGTTCAACCTCGGCGT
CGCCAGCGGCTCGGCGACCTTCGACGATGACGACGGCTTCCATGTCGGCG
GTTCGGCCGGGATCGACTTCGGTCCGCTGCCGTTCGTCGAGGGCCACATC
GACGTCGCCCCCGACGGAGGCATCTCGATCGGCGGTGAGCTGCAGGGCGT
CCTGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17801:5..211+

>mRNA_P-wetherbeei_contig17801.1.1 ID=mRNA_P-wetherbeei_contig17801.1.1|Name=mRNA_P-wetherbeei_contig17801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig17801:5..211+ (Phaeothamnion wetherbeei SAG_119_79)
TCGGTCGGCAGCGACGGGATCAGCACCGGCGGCGGGTTCAACCTCGGCGT
CGCCAGCGGCTCGGCGACCTTCGACGATGACGACGGCTTCCATGTCGGCG
GTTCGGCCGGGATCGACTTCGGTCCGCTGCCGTTCGTCGAGGGCCACATC
GACGTCGCCCCCGACGGAGGCATCTCGATCGGCGGTGAGCTGCAGGGCGT
CCTGCCC
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