mRNA_P-wetherbeei_contig178.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig178.4.1
Unique NamemRNA_P-wetherbeei_contig178.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig178.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig178contigP-wetherbeei_contig178:4714..5370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size657
Hectar predicted targeting categorysignal peptide
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.1052687-UTR-P-wetherbeei_contig178:4713..47461683186127.1052687-UTR-P-wetherbeei_contig178:4713..4746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig178 4714..4746 +
1683186127.1222188-UTR-P-wetherbeei_contig178:5157..53701683186127.1222188-UTR-P-wetherbeei_contig178:5157..5370Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig178 5158..5370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.1138813-CDS-P-wetherbeei_contig178:4746..51571683186127.1138813-CDS-P-wetherbeei_contig178:4746..5157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig178 4747..5157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig178.4.1prot_P-wetherbeei_contig178.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig178 4747..5157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig178.4.1

>prot_P-wetherbeei_contig178.4.1 ID=prot_P-wetherbeei_contig178.4.1|Name=mRNA_P-wetherbeei_contig178.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MRIAVMYSLLLVSTLYPGSTRNAYSSHVLPPFALPQASPQSSHSPRTSSR
GRAPIDLKQESFEKSVPTAPGRIDGRLATMGARFSTIETRFERRPGGARL
HREATRQATSRRALATPVRGSATWKMGLSTSRSGSI*
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mRNA from alignment at P-wetherbeei_contig178:4714..5370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig178.4.1 ID=mRNA_P-wetherbeei_contig178.4.1|Name=mRNA_P-wetherbeei_contig178.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=657bp|location=Sequence derived from alignment at P-wetherbeei_contig178:4714..5370+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTCTCAACCCTCTACCCAGGTTCAACAAGAAATGCGTATAGCAGTCAT
GTACTCCCTCCTTTTGGTCTCAACCCTCTACCCAGGTTCAACAAGAAATG
CGTATAGCAGTCATGTACTCCCTCCCTTTGCTTTGCCGCAAGCTTCGCCC
CAAAGTTCGCACTCACCTCGTACTTCGTCGAGGGGGCGGGCACCTATCGA
TCTGAAGCAAGAGAGCTTCGAAAAGAGCGTTCCCACCGCTCCCGGTCGAA
TCGACGGTCGACTTGCAACCATGGGGGCTCGCTTCAGCACGATCGAGACA
CGGTTCGAGCGACGGCCTGGAGGGGCTCGATTACATCGAGAGGCTACTCG
GCAAGCAACGTCGAGAAGGGCCTTGGCAACGCCGGTGAGGGGCTCGGCGA
CGTGGAAAATGGGCTTGTCGACGTCCAGAAGCGGCTCCATATAGTGGGAA
AGGAGTTCAATGTGGGGAGGTCAAGTTTTGTGGAAATCCTTGACATCGCT
CAGCGTGCCATTCTGGAGATGGGTAAGCCGATGCTCTTCTTGTTCGATTG
GTCCTGTGGGCTTTTTTGGGACCGACACGCTCTAGAGAGGTTGAAGCGTA
AAGAGGCTAGCGGTTCCGGTGTGGGGAAGAAAGTTATAATATGTAATTTG
ATGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig178:4714..5370+

>mRNA_P-wetherbeei_contig178.4.1 ID=mRNA_P-wetherbeei_contig178.4.1|Name=mRNA_P-wetherbeei_contig178.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig178:4714..5370+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTATAGCAGTCATGTACTCCCTCCTTTTGGTCTCAACCCTCTACCC
AGGTTCAACAAGAAATGCGTATAGCAGTCATGTACTCCCTCCCTTTGCTT
TGCCGCAAGCTTCGCCCCAAAGTTCGCACTCACCTCGTACTTCGTCGAGG
GGGCGGGCACCTATCGATCTGAAGCAAGAGAGCTTCGAAAAGAGCGTTCC
CACCGCTCCCGGTCGAATCGACGGTCGACTTGCAACCATGGGGGCTCGCT
TCAGCACGATCGAGACACGGTTCGAGCGACGGCCTGGAGGGGCTCGATTA
CATCGAGAGGCTACTCGGCAAGCAACGTCGAGAAGGGCCTTGGCAACGCC
GGTGAGGGGCTCGGCGACGTGGAAAATGGGCTTGTCGACGTCCAGAAGCG
GCTCCATATAG
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