mRNA_P-wetherbeei_contig178.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A835Z885_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z885_9STRA) HSP 1 Score: 382 bits (980), Expect = 2.100e-130 Identity = 204/245 (83.27%), Postives = 221/245 (90.20%), Query Frame = 2
Query: 296 VTAFVPGT-SPFVTGTMSAGLRVSAAVSSVA-PPASRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
V AF G S +++G+MSAGLR+ A SS AS +SGAAS VMMPIGVPKVAYRVPGA +ADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVI+GLAIYDTMQHIKSEV+TIN+G+AASMASFLLAAGAKGKR+ALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMY+ M+G+TQE V ALDRDNFMSAQ A +FGLIDQ+IELKKE
Sbjct: 18 VAAFSSGAHSTWLSGSMSAGLRMPAVPSSTGLSKASYQRSGAASTVMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVIAGLAIYDTMQHIKSEVITINMGMAASMASFLLAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAQMSGRTQEEVTRALDRDNFMSAQAALEFGLIDQIIELKKE 262
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A6H5JGP1_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP1_9PHAE) HSP 1 Score: 369 bits (948), Expect = 6.570e-126 Identity = 194/237 (81.86%), Postives = 210/237 (88.61%), Query Frame = 2
Query: 332 TGTMSAGLRVSAAVSSVAPPA------SRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
TGTMS GLR S + A S KSGAAS VMMPIGVPKVAYRVPGA TADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLDSEDSTKPIY+YVNCPGGSVI+GLA++DTMQHI+SEVVTINVGLAASMASF+LAAGAKGKR+ALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMY+MMTGQTQE++ LDRDNFMSAQ A D+GL+D VI+L K+
Sbjct: 2 TGTMSPGLRTPGTTSVLGREARTYRRLSTTKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 238
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S1TU42_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU42_9STRA) HSP 1 Score: 358 bits (918), Expect = 4.630e-121 Identity = 188/260 (72.31%), Postives = 222/260 (85.38%), Query Frame = 2
Query: 242 MRARLLPAAAALAVAASRVTAFVPGTSPFVTGTMSAGLRVSAAVSSVAPPASRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKK 1021
M ++L A AAL AS +A S F TGT++AGL +A R SGA S+VMMPIGVPKVAYRVPG+ +ADW+DIYNRLYRERIIF+GQEIDDE ANQIIGV+LYLDSED KPIYMY+NCPGGSVI+G+AIYDTMQHIK++VVTINVG++ASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYSMMTGQTQE++++ LDRDNFMSA QA+++GL+DQ+I++++
Sbjct: 1 MAGKMLLALAALLPCASAWSA-----SRFTTGTLNAGLYAPSAAGV------RGTSGAGSMVMMPIGVPKVAYRVPGSGSADWIDIYNRLYRERIIFVGQEIDDEFANQIIGVLLYLDSEDPDKPIYMYLNCPGGSVIAGMAIYDTMQHIKADVVTINVGISASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMMTGQTQEQIVKDLDRDNFMSAAQAQEYGLVDQLIDVQE 249
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A0G4F8U0_VITBC (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8U0_VITBC) HSP 1 Score: 355 bits (911), Expect = 2.550e-119 Identity = 174/208 (83.65%), Postives = 195/208 (93.75%), Query Frame = 2
Query: 401 AKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
A SG S+ MMPIGVPKVAYR+PG+ ADW+DIYNRLYRERIIFLGQEIDDE ANQIIGVMLYLDSEDSTKPIY+Y+NCPGGSVI+GLAIYDTMQHIKSEVVTINVGL+ASMASFLLAAG KGKR ALPHSRVMIHQPMGGAQGQAEDIKVEA QI+RI+DN+V+MYSMMTGQT+E++++ LDRDNFMSAQQAK++GLID VI+LK +
Sbjct: 82 ASSGVGSLKMMPIGVPKVAYRIPGSPNADWIDIYNRLYRERIIFLGQEIDDEFANQIIGVMLYLDSEDSTKPIYIYMNCPGGSVIAGLAIYDTMQHIKSEVVTINVGLSASMASFLLAAGTKGKRFALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKDNLVKMYSMMTGQTREQIIKDLDRDNFMSAQQAKEYGLIDHVIDLKTD 289
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S2CF89_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CF89_9STRA) HSP 1 Score: 341 bits (875), Expect = 2.000e-114 Identity = 170/222 (76.58%), Postives = 199/222 (89.64%), Query Frame = 2
Query: 356 RVSAAVSSVAPPASRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKK 1021
R SA VA ++ +GA +VMMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGVMLYLDSEDS+KPIY+Y+NCPGGSVI+G+A++DTM HIKS+VVTIN+GLAASMASFLLA G KG R+ALP+SRVMIHQPMGGAQGQAEDIKVEA QIMRI++N+VRMY+ MTGQTQE+++ LDRDNFMSAQQA ++GL+DQVIEL +
Sbjct: 41 RASAQAPRVAKVSTANTAGAGGLVMMPIGVPKVAYRVPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSSKPIYLYINCPGGSVIAGMALFDTMNHIKSKVVTINLGLAASMASFLLAGGEKGSRMALPNSRVMIHQPMGGAQGQAEDIKVEAAQIMRIKENLVRMYAQMTGQTQEQIIIDLDRDNFMSAQQAMEYGLVDQVIELSE 262
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S0KYD1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYD1_9STRA) HSP 1 Score: 340 bits (873), Expect = 4.160e-114 Identity = 166/201 (82.59%), Postives = 188/201 (93.53%), Query Frame = 2
Query: 422 IVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
I MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIFLG EIDDELANQIIGVMLYLDSEDS+KPIY+Y+NCPGGSVISGLAI+D MQHIKSEV+TIN+GLAASMASF++AAG+KGKRLALP SR+MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYSM TGQTQ+++ LDRDNFMSAQ+A ++GLID+V+E KE
Sbjct: 60 IKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDSEDSSKPIYLYINCPGGSVISGLAIFDCMQHIKSEVITINLGLAASMASFIMAAGSKGKRLALPSSRIMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMFTGQTQDQITRDLDRDNFMSAQEAVEYGLIDRVLEYSKE 260
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S2N232_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N232_9STRA) HSP 1 Score: 339 bits (870), Expect = 9.310e-114 Identity = 168/219 (76.71%), Postives = 196/219 (89.50%), Query Frame = 2
Query: 368 AVSSVAPPASRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
AV S+A RA+ + I MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIF+G EIDDELANQIIGV+LYLDSED KPIY+Y+NCPGGSVISGLAIYD MQHIKSEV+TIN+GLAASMASF+LAAG+KGKRLALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MY+MMTGQTQ++++ LDRDNF+SAQ+A ++GL+D+V+E+ E
Sbjct: 32 AVRSLARSGVRARGCSRDIKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFIGSEIDDELANQIIGVLLYLDSEDQDKPIYLYINCPGGSVISGLAIYDCMQHIKSEVITINLGLAASMASFILAAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYAMMTGQTQDQIISDLDRDNFLSAQEAMEYGLVDRVLEIDTE 250
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S2S0Z5_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0Z5_9STRA) HSP 1 Score: 339 bits (870), Expect = 1.270e-113 Identity = 163/204 (79.90%), Postives = 190/204 (93.14%), Query Frame = 2
Query: 401 AKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIE 1012
A+ GA +VMMPIGVPKVAYR+PG+ +ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGVMLYLDSEDS KPIY+Y+NCPGGSVI+G+A++DTM HIKS VVTIN+GL+ASMASFLLAAG +G R+ALPHSRVMIHQPMGGAQGQAEDIKVEA QIMRI++N+VRMYS MTGQTQE+++ LDRDNFMSAQ+A ++GLID++IE
Sbjct: 60 ARQGAGGLVMMPIGVPKVAYRIPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSKKPIYLYINCPGGSVIAGMALFDTMNHIKSPVVTINLGLSASMASFLLAAGKRGSRMALPHSRVMIHQPMGGAQGQAEDIKVEAAQIMRIKENLVRMYSQMTGQTQEQIIRDLDRDNFMSAQEALEYGLIDKIIE 263
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S2NSD7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSD7_9STRA) HSP 1 Score: 340 bits (871), Expect = 1.670e-113 Identity = 166/201 (82.59%), Postives = 187/201 (93.03%), Query Frame = 2
Query: 422 IVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
I MMPIGVPKVAYRVPG+++ADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLD ED+TKPIY+Y+NCPGGSVI+GLAIYD M HI SEVVTINVGLAASMASF+LA G+KGKRLALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDNIV+MYSMM+GQTQE++ LDRDNFMSAQQA ++GL+D+V+E+ +E
Sbjct: 80 ITMMPIGVPKVAYRVPGSNSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDQEDNTKPIYLYINCPGGSVIAGLAIYDCMNHIASEVVTINVGLAASMASFILAGGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNIVKMYSMMSGQTQEQITTDLDRDNFMSAQQALEYGLVDRVVEMPRE 280
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A6V2B3S7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2B3S7_9STRA) HSP 1 Score: 339 bits (869), Expect = 1.800e-113 Identity = 166/209 (79.43%), Postives = 190/209 (90.91%), Query Frame = 2
Query: 398 RAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
R+ S I MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIF+G EIDDELANQIIGVMLYLDSED KPIY+Y+NCPGGSVISGLAIYD MQHIKSEV+TIN+GLAASMASF+LAAG+KGKRLALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYSMMTGQTQ+++++ LDRDNF+SAQ+A +GL+D+V+E+ E
Sbjct: 52 RSSSSRNDIKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFIGSEIDDELANQIIGVMLYLDSEDQDKPIYLYINCPGGSVISGLAIYDCMQHIKSEVITINLGLAASMASFILAAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMMTGQTQDQIVKDLDRDNFLSAQEAMAYGLVDRVLEVNSE 260 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig178.1.2 >prot_P-wetherbeei_contig178.1.2 ID=prot_P-wetherbeei_contig178.1.2|Name=mRNA_P-wetherbeei_contig178.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=298bp MRCPLWFSPRFISSLPHLPSEATFLPGLCANFVVSRMRARLLPAAAALAVback to top mRNA from alignment at P-wetherbeei_contig178:360..2466+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig178.1.2 ID=mRNA_P-wetherbeei_contig178.1.2|Name=mRNA_P-wetherbeei_contig178.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2107bp|location=Sequence derived from alignment at P-wetherbeei_contig178:360..2466+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig178:360..2466+ >mRNA_P-wetherbeei_contig178.1.2 ID=mRNA_P-wetherbeei_contig178.1.2|Name=mRNA_P-wetherbeei_contig178.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=894bp|location=Sequence derived from alignment at P-wetherbeei_contig178:360..2466+ (Phaeothamnion wetherbeei SAG_119_79)back to top |