mRNA_P-wetherbeei_contig17788.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17788.1.1
Unique NamemRNA_P-wetherbeei_contig17788.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A353LR39_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LR39_9PROT)

HSP 1 Score: 191 bits (485), Expect = 1.820e-60
Identity = 93/131 (70.99%), Postives = 113/131 (86.26%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTE 393
            MIDF  ++ +R YE +VPLINVVFLL+ FFL+ GTMQ AEPV V LP G +DE KP EAVT+Y+  DGFVY+FDQ+IEARFAPFMLRSFFLKEGHRSVQ+KAD+NADAET+I++M QMREI++EEI ++TE
Sbjct:    1 MIDFQDQQKRRTYEAVVPLINVVFLLLIFFLLAGTMQQAEPVDVTLPVGELDEIKPPEAVTIYVADDGFVYIFDQIIEARFAPFMLRSFFLKEGHRSVQVKADQNADAETIIELMAQMREIDVEEISLITE 131          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A2A5EUE2_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EUE2_9HYPH)

HSP 1 Score: 129 bits (323), Expect = 8.220e-36
Identity = 62/134 (46.27%), Postives = 94/134 (70.15%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHGK 402
            MIDF  E P+R +E +VPLIN+VFLL+ FF++ GT+Q  + ++V LP GV+D+ + +E V +Y+  DGFV+L D V++A  AP+MLR F    G  +V IKAD+NA A +LI +ME +R + + E+ ++TE  +
Sbjct:    1 MIDFDEETPRRPFETVVPLINIVFLLLIFFMLAGTLQPTDDIEVDLPAGVVDDKRASEDVVLYVEADGFVHLGDLVMDAALAPYMLRKFLDDGGIFNVAIKADENAPAHSLIQLMEGLRNVGVREVNLVTEQSE 134          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A2E5BQM9_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BQM9_9HYPH)

HSP 1 Score: 124 bits (311), Expect = 5.440e-34
Identity = 62/134 (46.27%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHGK 402
            MI+F   RP+R YE +VPLINVVFLL+ FFL+ GT+Q  + + V LP G +D+ + +E V +Y+  DGFVYL + V+ A  AP+MLR F  ++G   V IKAD+ A A  LI +ME +R + + E+ ++TE  +
Sbjct:    1 MIEFDEARPRRPYESVVPLINVVFLLLVFFLLAGTLQPTDDIDVDLPVGQVDDKRASEDVILYVEADGFVYLGETVMSADLAPYMLRXFLDEKGVFDVSIKADEKAPAHELIKLMEGLRNVGVREVNLVTEQSE 134          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A7HX66_PARL1 (Biopolymer transport protein ExbD/TolR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=A7HX66_PARL1)

HSP 1 Score: 124 bits (310), Expect = 7.720e-34
Identity = 61/134 (45.52%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHGK 402
            MI+F  E+P+R++E L+PLINVVFLL+ FFL+ GTM   EPV V LP+G +++ +     T+ +  DGFV+L D+V++A+ +  M+  +  ++G + V IKAD+ A AE L+ +ME +RE+ +E++ ILTE GK
Sbjct:    1 MIEFDEEQPRRQFETLIPLINVVFLLLIFFLLAGTMTPPEPVAVALPQGELNDRERDLPATLIMEADGFVWLGDRVVDAKISGPMVERYLGEQGTKRVAIKADQEAPAEALLLLMEGLREVGVEQVTILTERGK 134          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A081B7W4_9HYPH (Biopolymer transport protein ExbD/TolR n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081B7W4_9HYPH)

HSP 1 Score: 123 bits (308), Expect = 1.600e-33
Identity = 60/134 (44.78%), Postives = 93/134 (69.40%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHGK 402
            MI+F    P+R+ E +VPLINVVFLL+ FFL+TGT++  + V V+LP G +D+ K  E + +Y+  DGFV+  D  ++A+ AP+MLR+ F K    +V +KAD+ ADA  LI +ME +R I ++E++++T+  K
Sbjct:    1 MIEFEENPPRRQIESVVPLINVVFLLLIFFLLTGTLKKTDTVDVELPTGQVDDKKQEEELILYVEADGFVHFQDLTMDAQMAPYMLRNRFSKLAVEAVTVKADQAADAHDLIQLMEGLRNIGVKEVMLITQQAK 134          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A2D8RV19_9HYPH (Uncharacterized protein n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D8RV19_9HYPH)

HSP 1 Score: 120 bits (302), Expect = 1.260e-32
Identity = 59/133 (44.36%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHG 399
            MIDF  E P+R++E LVPLINVVFLL+ FFL+ GTMQ +E + V LPEGV+++ +     T+ +  DGF++L D+V++A+ +  M+         + V IKAD NA A+ ++++ME +RE  +E++ I+TE G
Sbjct:    1 MIDFDEEPPRRQFETLVPLINVVFLLLIFFLLAGTMQPSENIAVALPEGVLNDREKDVPTTLIVEADGFIWLGDRVMDAKLSGVMMEKHLKDTNTKRVAIKADANAPADAVLELMEGLREAGVEQVTIMTERG 133          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A2E1Q720_9PROT (Uncharacterized protein n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1Q720_9PROT)

HSP 1 Score: 118 bits (296), Expect = 1.020e-31
Identity = 60/134 (44.78%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHGK 402
            MI+F  E P+R++E LVPLINVVFLL+ FFL+ GTM+ AE V V LPEG++++ +     T+ +  DGFV+L D+V++A+ +  M+         + V IKAD +A AE ++ +ME +RE  +E++ ILTE G+
Sbjct:    1 MIEFDEEPPRRQFETLVPLINVVFLLLIFFLLAGTMKPAEDVAVSLPEGMLNDREQEVPTTLIVEADGFVWLGDRVMDAQLSGVMVEKHLKDTNTKRVAIKADADAPAEAVLQLMEGLREAGVEQVTILTERGQ 134          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A2Z4UIE1_9HYPH (Biopolymer transport protein ExbD n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UIE1_9HYPH)

HSP 1 Score: 116 bits (291), Expect = 5.860e-31
Identity = 59/134 (44.03%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHGK 402
            MI+F     +R YE +VPLINVVFLL+ FFL+ GT+Q  + + V LP G +D+ + +E + +Y+  DGFVYL D+V+ A  A + LR F  ++G   V IKAD+NA A  LI +ME +R + + E+ ++TE  +
Sbjct:    1 MIEFEEPPQRRPYESVVPLINVVFLLLIFFLLAGTLQPTDDIDVDLPVGQVDDKRASEDLVLYVEADGFVYLGDRVMGADLAAYALRDFLDEQGIYDVSIKADENAPAHELIKLMEGLRNVGVREVNLVTEQSE 134          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A2D4VIT2_9HYPH (Uncharacterized protein n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VIT2_9HYPH)

HSP 1 Score: 115 bits (288), Expect = 1.870e-30
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 MIDF----GPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHG 399
            MI+F    G   P+RE+E  +PLINVVFLL+ FFL+ GT+     V V LP G ID+  P + VT+Y+  DGFV++ +QV+E   A FML+ F   +    V IKAD+ A AE+++ +ME +R   ++++ +LTE G
Sbjct:    1 MIEFDEQDGAPAPRREFETTIPLINVVFLLLIFFLLAGTLGETSEVGVNLPSGTIDDPAPPQKVTLYVEADGFVWVGEQVMEPSLAGFMLKDFMKDKDKSRVSIKADQAAPAESVLTLMEGLRGAGVQQVTLLTERG 137          
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Match: A0A2A4S8D1_9HYPH (Uncharacterized protein n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4S8D1_9HYPH)

HSP 1 Score: 114 bits (285), Expect = 6.330e-30
Identity = 55/133 (41.35%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    1 MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGVIDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQIKADKNADAETLIDMMEQMREINIEEIIILTEHG 399
            MIDF     +R YE +VPLIN+VFLL+ FFL+ GT++ ++PVKV+LP G +D+    +   +Y+  DGFV+  +++++A+ AP+ML+    + G   V I ADK A A  L+ +ME +R I ++++I++T  G
Sbjct:    1 MIDFDEAPVRRPYESVVPLINIVFLLLIFFLLAGTIKPSDPVKVELPVGEVDDKGGLQDFALYMEADGFVHYGEKLMDAQMAPYMLKEDIKQAGVEKVSINADKGAPAHELLKLMEGLRTIGVKQVILVTNRG 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17788.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LR39_9PROT1.820e-6070.99Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A2A5EUE2_9HYPH8.220e-3646.27Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A0A2E5BQM9_9HYPH5.440e-3446.27Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A7HX66_PARL17.720e-3445.52Biopolymer transport protein ExbD/TolR n=1 Tax=Par... [more]
A0A081B7W4_9HYPH1.600e-3344.78Biopolymer transport protein ExbD/TolR n=1 Tax=Tep... [more]
A0A2D8RV19_9HYPH1.260e-3244.36Uncharacterized protein n=1 Tax=Parvibaculum sp. T... [more]
A0A2E1Q720_9PROT1.020e-3144.78Uncharacterized protein n=4 Tax=Proteobacteria Tax... [more]
A0A2Z4UIE1_9HYPH5.860e-3144.03Biopolymer transport protein ExbD n=3 Tax=Hyphomic... [more]
A0A2D4VIT2_9HYPH1.870e-3043.80Uncharacterized protein n=2 Tax=Parvibaculum TaxID... [more]
A0A2A4S8D1_9HYPH6.330e-3041.35Uncharacterized protein n=2 Tax=Rhodobiaceae bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17788contigP-wetherbeei_contig17788:398..802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_2892
PFAMsExbD
Model size405
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03559
KEGG TC1.A.30.2.1
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.26e-34
EggNOG OGsCOG0848@1|root,COG0848@2|Bacteria,1Q47S@1224|Proteobacteria,2VAQ5@28211|Alphaproteobacteria,1JPKQ@119043|Rhodobiaceae
DescriptionBiopolymer transport protein ExbD/TolR
Cds size405
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.7833464-CDS-P-wetherbeei_contig17788:397..8021683186126.7833464-CDS-P-wetherbeei_contig17788:397..802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17788 398..802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17788.1.1prot_P-wetherbeei_contig17788.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17788 398..802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17788.1.1

>prot_P-wetherbeei_contig17788.1.1 ID=prot_P-wetherbeei_contig17788.1.1|Name=mRNA_P-wetherbeei_contig17788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MIDFGPERPKREYEYLVPLINVVFLLITFFLITGTMQTAEPVKVQLPEGV
IDETKPAEAVTVYLGPDGFVYLFDQVIEARFAPFMLRSFFLKEGHRSVQI
KADKNADAETLIDMMEQMREINIEEIIILTEHGK*
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mRNA from alignment at P-wetherbeei_contig17788:398..802-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17788.1.1 ID=mRNA_P-wetherbeei_contig17788.1.1|Name=mRNA_P-wetherbeei_contig17788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig17788:398..802- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGATTTTGGTCCAGAACGGCCGAAACGTGAATATGAATATCTGGT GCCGCTTATCAATGTGGTGTTCCTGCTGATCACATTTTTTCTGATCACCG GCACGATGCAGACAGCCGAACCGGTAAAGGTGCAATTGCCCGAAGGCGTG ATCGACGAAACAAAGCCCGCCGAGGCGGTAACGGTTTATCTTGGCCCCGA TGGCTTTGTGTACCTGTTTGACCAGGTGATTGAGGCGCGCTTTGCCCCAT TCATGCTGCGCAGTTTCTTTCTGAAAGAAGGCCATCGTTCGGTTCAGATC AAGGCGGACAAAAACGCCGACGCCGAAACGCTGATCGATATGATGGAACA GATGCGCGAAATAAATATCGAAGAGATCATTATTTTGACGGAGCATGGAA AGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17788:398..802-

>mRNA_P-wetherbeei_contig17788.1.1 ID=mRNA_P-wetherbeei_contig17788.1.1|Name=mRNA_P-wetherbeei_contig17788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig17788:398..802- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGATTTTGGTCCAGAACGGCCGAAACGTGAATATGAATATCTGGT
GCCGCTTATCAATGTGGTGTTCCTGCTGATCACATTTTTTCTGATCACCG
GCACGATGCAGACAGCCGAACCGGTAAAGGTGCAATTGCCCGAAGGCGTG
ATCGACGAAACAAAGCCCGCCGAGGCGGTAACGGTTTATCTTGGCCCCGA
TGGCTTTGTGTACCTGTTTGACCAGGTGATTGAGGCGCGCTTTGCCCCAT
TCATGCTGCGCAGTTTCTTTCTGAAAGAAGGCCATCGTTCGGTTCAGATC
AAGGCGGACAAAAACGCCGACGCCGAAACGCTGATCGATATGATGGAACA
GATGCGCGAAATAAATATCGAAGAGATCATTATTTTGACGGAGCATGGAA
AGTGA
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