mRNA_P-wetherbeei_contig17738.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17738.2.1
Unique NamemRNA_P-wetherbeei_contig17738.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17738.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17738contigP-wetherbeei_contig17738:147..1154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1008
Hectar predicted targeting categoryother localisation
Exons1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.4041302-UTR-P-wetherbeei_contig17738:146..2361683186125.4041302-UTR-P-wetherbeei_contig17738:146..236Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17738 147..236 -
1683186125.4270287-UTR-P-wetherbeei_contig17738:848..11541683186125.4270287-UTR-P-wetherbeei_contig17738:848..1154Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17738 849..1154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.4182508-CDS-P-wetherbeei_contig17738:236..8481683186125.4182508-CDS-P-wetherbeei_contig17738:236..848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17738 237..848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17738.2.1prot_P-wetherbeei_contig17738.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17738 237..848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17738.2.1

>prot_P-wetherbeei_contig17738.2.1 ID=prot_P-wetherbeei_contig17738.2.1|Name=mRNA_P-wetherbeei_contig17738.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=204bp
MVTDMERAERWSTAHPKPLPLGTGSRRDAYQEAALEVWSGADADADDYSS
LPPHDVCGGDGRVVHIRFLDPTASLAATAAVAPAVGDGPHYVWSVTHSVR
GTRIPVEVQTVGGGDEGDGGGAVGVAAVAAADMVLPLAPQVYEVTVRVLS
GGYDGGGSGGGGGSGGGGSGDGGRVVSTYRTRLVAHLPTADTDGKWSGSC
GNR*
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mRNA from alignment at P-wetherbeei_contig17738:147..1154-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17738.2.1 ID=mRNA_P-wetherbeei_contig17738.2.1|Name=mRNA_P-wetherbeei_contig17738.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig17738:147..1154- (Phaeothamnion wetherbeei SAG_119_79)
CCAGCAAGCAGCCTGCGTCGCCATCTTCGTATCGCTGCTCATCTCGACGG
CGGGAGCATTTGCGCTGGCAATCGGCCGAAGAGTGGACGTAAGCAATTGG
GAAGATCCAAGCACACCTCACTTTCCCTCACGCTTGACTGCTCTACCGAT
TTCCGTGCAACCAATGCCAGGAGACTCTGCCACCTTAATAAACATATTAA
CAATGCCAAACCTGAAGGCTGCGCTTGTTCAATACGAAAACAGCTTTTTC
GACCTTCACCCACTCAATAACGTTTCCCGTCTCACTCGGCTTAGCTCACG
ACACCAATGGTTACCGACATGGAGCGCGCCGAGCGGTGGTCAACCGCGCA
CCCGAAGCCGCTGCCTTTGGGAACGGGCAGCCGCCGCGACGCGTACCAGG
AGGCGGCGCTTGAAGTTTGGAGCGGCGCGGACGCTGACGCCGACGACTAC
TCGAGCCTCCCGCCGCACGACGTCTGCGGCGGCGACGGGCGCGTCGTCCA
CATCCGTTTCCTGGATCCGACGGCATCGCTGGCAGCGACCGCGGCGGTGG
CGCCGGCGGTAGGCGATGGCCCGCACTACGTCTGGTCCGTCACACACAGC
GTCCGTGGCACGCGGATTCCGGTGGAGGTCCAAACCGTCGGTGGCGGCGA
TGAGGGCGACGGCGGCGGCGCAGTTGGCGTCGCCGCCGTCGCCGCCGCGG
ATATGGTCTTACCGCTGGCGCCGCAAGTCTACGAAGTTACGGTGCGCGTC
CTCTCGGGTGGTTATGACGGCGGCGGCAGCGGCGGCGGCGGCGGAAGCGG
CGGGGGCGGCTCCGGCGACGGCGGACGGGTCGTGTCGACATACAGAACGC
GGCTCGTGGCGCACCTTCCAACAGCAGACACAGACGGGAAGTGGAGTGGA
TCCTGCGGGAACCGATGACAGACCGGCCGGCGGTGGCAGAGTGATTGTGG
AATCACCGACACGTTAGCTTCCCCCTTTAGTGCGTTCATAATACTAGCTC
TCCTCTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17738:147..1154-

>mRNA_P-wetherbeei_contig17738.2.1 ID=mRNA_P-wetherbeei_contig17738.2.1|Name=mRNA_P-wetherbeei_contig17738.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig17738:147..1154- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTACCGACATGGAGCGCGCCGAGCGGTGGTCAACCGCGCACCCGAA
GCCGCTGCCTTTGGGAACGGGCAGCCGCCGCGACGCGTACCAGGAGGCGG
CGCTTGAAGTTTGGAGCGGCGCGGACGCTGACGCCGACGACTACTCGAGC
CTCCCGCCGCACGACGTCTGCGGCGGCGACGGGCGCGTCGTCCACATCCG
TTTCCTGGATCCGACGGCATCGCTGGCAGCGACCGCGGCGGTGGCGCCGG
CGGTAGGCGATGGCCCGCACTACGTCTGGTCCGTCACACACAGCGTCCGT
GGCACGCGGATTCCGGTGGAGGTCCAAACCGTCGGTGGCGGCGATGAGGG
CGACGGCGGCGGCGCAGTTGGCGTCGCCGCCGTCGCCGCCGCGGATATGG
TCTTACCGCTGGCGCCGCAAGTCTACGAAGTTACGGTGCGCGTCCTCTCG
GGTGGTTATGACGGCGGCGGCAGCGGCGGCGGCGGCGGAAGCGGCGGGGG
CGGCTCCGGCGACGGCGGACGGGTCGTGTCGACATACAGAACGCGGCTCG
TGGCGCACCTTCCAACAGCAGACACAGACGGGAAGTGGAGTGGATCCTGC
GGGAACCGATGA
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