mRNA_P-wetherbeei_contig17732.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17732.1.1
Unique NamemRNA_P-wetherbeei_contig17732.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 4.710e-19
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPIAMGENGSQ 264
            LSGGQQALLGL+ V+ALSS  A PL + DEVDAALD + Q A ARL+  TF   Q LCVSHHA FHR +G  +P+ M +  S+
Sbjct: 1081 LSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVPVEMRDGVSR 1163          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.830e-19
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPIAMGENGSQYV 270
            LSGGQQ+LLGL+FV ALS+  A+PLY+ DEVDAALD + Q  VA L+   F G+QVLCVSHHAA   LA + + +AM +  S+ V
Sbjct: 1216 LSGGQQSLLGLAFVFALSAYHAAPLYLLDEVDAALDAANQRRVAALLPRAFRGAQVLCVSHHAATQALATRRVRVAMEKGSSRIV 1300          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.550e-18
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPIAMGENGSQ 264
            LSGGQQALLGL+ V+ALSS  A PL + DEVDAALD + Q A ARL+  TF   Q LCVSHHA FHR +G  + + M +  S+
Sbjct:  600 LSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSR 682          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: A0A8K1CQV8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQV8_PYTOL)

HSP 1 Score: 78.6 bits (192), Expect = 5.370e-15
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPI 240
            LSGGQ  +LG+++V AL+  +ASPLYI DE+DAALD   Q  V  L+ + F+ SQV+C+SHH AFH  A Q++ +
Sbjct: 1046 LSGGQLTMLGMAYVFALARYSASPLYILDEIDAALDEHNQRLVVELVLEYFSHSQVICISHHEAFHARAHQLIQV 1120          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: A0A024GMI1_9STRA (SMC_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMI1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.870e-14
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPI 240
            LSGGQ ALLG+S++ AL+S +A PL I DE+DAALD   Q+ VA L    F   QV+CVSHH A H  A Q++ +
Sbjct: 1225 LSGGQLALLGMSYIFALASCSAIPLCILDEIDAALDEQNQENVAALAASNFRSIQVICVSHHKAMHNKAQQLIQV 1299          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: A0A1V9ZMH3_9STRA (SMC_N domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMH3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.480e-14
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPI 240
            LSGGQ  LLGL+FV AL+  +ASP+Y+ DE+DAALD   Q AVA L+   F  SQV C+SHH + H  A  +L +
Sbjct:  994 LSGGQLTLLGLAFVFALAQYSASPVYVLDEIDAALDEPNQRAVADLVWRIFGQSQVFCISHHESVHAKATTLLRV 1068          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: T0QA93_SAPDV (SMC_N domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QA93_SAPDV)

HSP 1 Score: 73.9 bits (180), Expect = 2.250e-13
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPIAMGENGSQYV 270
            LSGGQ  LLGL++V AL+  +ASPLYI DE+DAALD   Q  VA LI   F  SQV C+SHH + H  A  +L +   +  S YV
Sbjct: 1022 LSGGQLTLLGLAYVFALAHYSASPLYILDEIDAALDEHNQLVVADLIWAHFGQSQVFCISHHESVHAKATTLLKVRK-DAASTYV 1105          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: F0WC70_9STRA (Chromosome segregation protein Smc putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WC70_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.520e-12
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPIAM 246
            +SGGQ ALLG+S++ AL+S +ASPL I DE+DAALD   Q  +A L    F+  QV+CVSHH       G  +P+A+
Sbjct:  406 MSGGQLALLGMSYIFALASCSASPLCILDEIDAALDEQNQAIIASLAASNFSSIQVICVSHHKV-----GGSIPVAV 477          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: A0A146KGA8_9EUKA (SMC multi domain protein (Fragment) n=1 Tax=Trepomonas sp. PC1 TaxID=1076344 RepID=A0A146KGA8_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 2.940e-10
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    7 LASLSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLAGQMLPIAMGENGSQ 264
            L+ LSGGQ++LL LSF +AL     SP+YI DE+DAALDLS   ++ RLI   F GSQ + VS        A Q+  +   +  S+
Sbjct: 1156 LSGLSGGQKSLLALSFTLALLECRPSPIYILDEIDAALDLSHTHSIGRLIQQEFKGSQFIIVSLKEGMFNHANQLFRVKFQDGMSK 1241          
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Match: A2EKI4_TRIVA (SMC flexible hinge domain protein, putative n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2EKI4_TRIVA)

HSP 1 Score: 61.6 bits (148), Expect = 4.860e-9
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   16 LSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVARLIGDTFAGSQVLCVSHHAAFHRLA 222
            LSGGQ+AL+ L  V+AL     +P+YI DEVDAALDLS+   + RL+   F  SQ + VSH    ++ A
Sbjct: 1079 LSGGQRALIALGLVLALLKFNPAPIYILDEVDAALDLSRTQDIGRLLKSQFKASQFIVVSHKEGLYKYA 1147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17732.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQC9_ECTSI4.710e-1959.04SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CK59_9STRA8.830e-1957.65P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5JDH3_9PHAE5.550e-1857.83SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8K1CQV8_PYTOL5.370e-1552.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GMI1_9STRA1.870e-1453.33SMC_N domain-containing protein n=1 Tax=Albugo can... [more]
A0A1V9ZMH3_9STRA6.480e-1453.33SMC_N domain-containing protein n=1 Tax=Achlya hyp... [more]
T0QA93_SAPDV2.250e-1351.76SMC_N domain-containing protein n=2 Tax=Saprolegni... [more]
F0WC70_9STRA3.520e-1249.35Chromosome segregation protein Smc putative n=1 Ta... [more]
A0A146KGA8_9EUKA2.940e-1044.19SMC multi domain protein (Fragment) n=1 Tax=Trepom... [more]
A2EKI4_TRIVA4.860e-947.83SMC flexible hinge domain protein, putative n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17732contigP-wetherbeei_contig17732:52..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQC9
PFAMsSMC_N,SMC_hinge
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categorysignal peptide
GOsGO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0008278,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030892,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1903047,GO:1990837
Exons2
Evalue7.73e-20
EggNOG OGsCOG1196@1|root,KOG0933@2759|Eukaryota
Descriptionchromosome condensation
Cds size276
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.2345538-CDS-P-wetherbeei_contig17732:51..1651683186125.2345538-CDS-P-wetherbeei_contig17732:51..165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17732 52..165 +
1683186125.2438884-CDS-P-wetherbeei_contig17732:428..5901683186125.2438884-CDS-P-wetherbeei_contig17732:428..590Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17732 429..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17732.1.1prot_P-wetherbeei_contig17732.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17732 52..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17732.1.1

>prot_P-wetherbeei_contig17732.1.1 ID=prot_P-wetherbeei_contig17732.1.1|Name=mRNA_P-wetherbeei_contig17732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MELASLSGGQQALLGLSFVVALSSSAASPLYIFDEVDAALDLSKQDAVAR
LIGDTFAGSQVLCVSHHAAFHRLAGQMLPIAMGENGSQYVG*
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mRNA from alignment at P-wetherbeei_contig17732:52..590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17732.1.1 ID=mRNA_P-wetherbeei_contig17732.1.1|Name=mRNA_P-wetherbeei_contig17732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=539bp|location=Sequence derived from alignment at P-wetherbeei_contig17732:52..590+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTGGCGAGCCTGTCGGGCGGGCAGCAGGCGCTACTGGGGCTGTC ATTCGTGGTGGCGCTGTCGAGCTCCGCCGCCTCGCCGCTTTACATCTTCG ACGAAGTCGACGCTGTGAGTGCTTCGCATCTTTTTTTTGCAGCCAGTTCG ACTCGGTTCAGCTCGGCTCAATACTTGCTCGGTTCAACTTTCTTTGGACT GGCCGGCCCGTAGTACATGGCAGCTTCTTCCGCCCTCGTCCTCGATCAGT TGCTGGCAGGAGTATGTCCCCTCGCGCTCTTGGTGCTTGCTGGGCGAATT TCTGCCTTATCGAGCTTAGCTTCTGTGCTGAGTAAGCCCTTGTTTCGTCC TTTTCCTGCCTGCGCCGTTTCGAGCAGGCGCTGGACCTGTCGAAGCAGGA CGCCGTCGCCCGTCTCATCGGCGACACCTTCGCGGGGTCGCAGGTGCTCT GCGTCAGCCACCACGCCGCCTTCCACCGCCTGGCGGGCCAGATGCTCCCC ATCGCCATGGGGGAGAATGGCTCACAGTACGTTGGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17732:52..590+

>mRNA_P-wetherbeei_contig17732.1.1 ID=mRNA_P-wetherbeei_contig17732.1.1|Name=mRNA_P-wetherbeei_contig17732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig17732:52..590+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTGGCGAGCCTGTCGGGCGGGCAGCAGGCGCTACTGGGGCTGTC
ATTCGTGGTGGCGCTGTCGAGCTCCGCCGCCTCGCCGCTTTACATCTTCG
ACGAAGTCGACGCTGCGCTGGACCTGTCGAAGCAGGACGCCGTCGCCCGT
CTCATCGGCGACACCTTCGCGGGGTCGCAGGTGCTCTGCGTCAGCCACCA
CGCCGCCTTCCACCGCCTGGCGGGCCAGATGCTCCCCATCGCCATGGGGG
AGAATGGCTCACAGTACGTTGGCTAA
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