mRNA_P-wetherbeei_contig17724.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17724.1.1
Unique NamemRNA_P-wetherbeei_contig17724.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A523P5V5_9PROT (Replicative DNA helicase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P5V5_9PROT)

HSP 1 Score: 286 bits (733), Expect = 5.410e-93
Identity = 145/168 (86.31%), Postives = 158/168 (94.05%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKTA A+NIAQHAAIKE L VA+FSMEMPSEQLAMRM+SSLGRIDQHK+RTG+L+DDDWPRLTHAVGILSE  MFIDDTPAL+P ++RARCRRLAREHG+GLIV+DYLQLMQV G+ ENRATEISEISRSLKALAKELS PV+ALSQLNRSLE RQDKRPVMSDLRE
Sbjct:  230 MGKTALALNIAQHAAIKESLSVAIFSMEMPSEQLAMRMLSSLGRIDQHKIRTGKLADDDWPRLTHAVGILSEVNMFIDDTPALSPGEIRARCRRLAREHGLGLIVVDYLQLMQVRGSNENRATEISEISRSLKALAKELSVPVLALSQLNRSLEQRQDKRPVMSDLRE 397
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BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A3D5DI66_9GAMM (Replicative DNA helicase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DI66_9GAMM)

HSP 1 Score: 283 bits (723), Expect = 1.740e-91
Identity = 139/168 (82.74%), Postives = 159/168 (94.64%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKTAFA+N+AQHAA+KE LPVA+FSMEMPSEQLAMRM+SSLG+IDQHK+RTG+L D+DWPRLTHAVG+LSE  M+IDDTPAL+P +LR+RCRRLARE G+GLI++DYLQLMQV G+KENRATEISEISRSLKALAKEL+ PV+ALSQLNRSLESR DKRPVMSDLRE
Sbjct:  230 MGKTAFAVNVAQHAAVKESLPVAIFSMEMPSEQLAMRMLSSLGKIDQHKVRTGKLGDEDWPRLTHAVGVLSEVDMYIDDTPALSPGELRSRCRRLAREQGLGLIIVDYLQLMQVHGSKENRATEISEISRSLKALAKELNVPVLALSQLNRSLESRTDKRPVMSDLRE 397
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BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A1G0G1W0_9GAMM (Replicative DNA helicase n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G1W0_9GAMM)

HSP 1 Score: 276 bits (706), Expect = 6.000e-89
Identity = 142/168 (84.52%), Postives = 154/168 (91.67%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKTA AINIA+HAAIK+ L VAVFSMEM  EQLAMRMMSSLGRIDQHK+RTG L DDDWPRLT AVGILSEA+MF+DDTPALTP++LRARCRR+ REHG+ LIV+DYLQLMQVPGTKENRATEISEISRSLKA+AKEL  PVIALSQLNRSLE R +KRPVMSDLRE
Sbjct:  228 MGKTALAINIAEHAAIKDRLTVAVFSMEMSGEQLAMRMMSSLGRIDQHKVRTGDLDDDDWPRLTSAVGILSEARMFVDDTPALTPAELRARCRRIYREHGLDLIVVDYLQLMQVPGTKENRATEISEISRSLKAMAKELHVPVIALSQLNRSLEQRPNKRPVMSDLRE 395
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BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A1G0F2L0_9GAMM (Replicative DNA helicase n=1 Tax=Gammaproteobacteria bacterium RBG_16_57_12 TaxID=1798266 RepID=A0A1G0F2L0_9GAMM)

HSP 1 Score: 275 bits (702), Expect = 2.340e-88
Identity = 138/168 (82.14%), Postives = 156/168 (92.86%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKT FA+NIA+HAAIK  +PVAVFSMEMP EQLAMR+MSSLGRIDQH++RTG+L DDDWPRLT AVG+L+E  ++IDD+PALTP++LRAR RRLAREHG+G+IVIDYLQLMQVPGTKENRATEISEISRSLKALAKEL+ PVIALSQLNRSLE R +KRPVMSDLRE
Sbjct:  228 MGKTTFAMNIAEHAAIKSRIPVAVFSMEMPGEQLAMRLMSSLGRIDQHRVRTGKLDDDDWPRLTSAVGMLAEVPLYIDDSPALTPNELRARARRLAREHGLGMIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELNVPVIALSQLNRSLEQRPNKRPVMSDLRE 395
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BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A3M1DM85_9GAMM (Replicative DNA helicase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DM85_9GAMM)

HSP 1 Score: 274 bits (701), Expect = 3.400e-88
Identity = 138/168 (82.14%), Postives = 155/168 (92.26%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKTAFAIN+A+HAAIK+   VAVFSMEMP EQLAMRM+SSLGRID HK+RTG+L D+DWPRLT AVG+LSEA++FIDDTPALTPS+LR RCRR+AREHG+ L+V+DYLQLMQVPGT ENRATEISEISRSLKALAKELS PV+ALSQLNRSLE R +KRPVMSDLRE
Sbjct:  229 MGKTAFAINMAEHAAIKDGKTVAVFSMEMPGEQLAMRMLSSLGRIDSHKVRTGKLGDEDWPRLTSAVGLLSEARLFIDDTPALTPSELRTRCRRIAREHGLDLVVVDYLQLMQVPGTSENRATEISEISRSLKALAKELSVPVLALSQLNRSLEQRPNKRPVMSDLRE 396
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BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A849MD12_9PROT (Replicative DNA helicase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A849MD12_9PROT)

HSP 1 Score: 271 bits (693), Expect = 5.600e-87
Identity = 137/168 (81.55%), Postives = 155/168 (92.26%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKTAFAIN+A++AAIK +  VA+FSMEMP EQLAMRMMSSLGRIDQHK+RTG+L D+DWPRLT +V IL E++MFIDDTPALTPS+LRARCRR++REHG+ L+V+DYLQLMQV GT ENRATEISEISRSLKA+AKELS PVIALSQLNRSLE RQDKRPVMSDLRE
Sbjct:  228 MGKTAFAINVAENAAIKGKDSVAIFSMEMPGEQLAMRMMSSLGRIDQHKIRTGKLDDEDWPRLTSSVSILQESRMFIDDTPALTPSELRARCRRISREHGLDLVVVDYLQLMQVAGTSENRATEISEISRSLKAMAKELSVPVIALSQLNRSLEQRQDKRPVMSDLRE 395
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BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A1G5PKX0_9GAMM (Replicative DNA helicase n=2 Tax=Thiohalomonas denitrificans TaxID=415747 RepID=A0A1G5PKX0_9GAMM)

HSP 1 Score: 270 bits (689), Expect = 2.060e-86
Identity = 139/168 (82.74%), Postives = 153/168 (91.07%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKT FA+NIA++AAIK ++PVA+FSMEMP EQLAMRMMSSLGRIDQHK+RTG+L DDDWPRLT AVGILSEA ++IDDTP LTP+DLRAR RRLAREHG+GLIVIDYLQLMQV G  ENRATEISEISRSLK LAKEL+ PVIALSQLNRSLE R +KRPVMSDLRE
Sbjct:  227 MGKTTFAMNIAENAAIKHQVPVAIFSMEMPGEQLAMRMMSSLGRIDQHKVRTGKLGDDDWPRLTSAVGILSEAPIYIDDTPGLTPTDLRARARRLAREHGLGLIVIDYLQLMQVVGGGENRATEISEISRSLKGLAKELNVPVIALSQLNRSLEQRPNKRPVMSDLRE 394
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BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A6L8EIA2_9GAMM (Replicative DNA helicase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EIA2_9GAMM)

HSP 1 Score: 269 bits (688), Expect = 2.920e-86
Identity = 133/168 (79.17%), Postives = 152/168 (90.48%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKTAFA+NIA+HA IKE L   VFSMEMP EQLAMRMMSSLGR+DQHK+RTG+L DDDWPRLT AV +L + K+FIDDTPALTP++LRARCRR+AREHG+ +I+IDYLQLMQ+PGT ENRATEISEISRSLKA+AKEL+ PV+ALSQLNRSLE R +KRPVMSDLRE
Sbjct:  226 MGKTAFAVNIAEHAVIKEGLSAVVFSMEMPGEQLAMRMMSSLGRVDQHKVRTGKLHDDDWPRLTSAVTLLKDKKLFIDDTPALTPAELRARCRRIAREHGLDMIIIDYLQLMQIPGTSENRATEISEISRSLKAMAKELNVPVVALSQLNRSLEQRPNKRPVMSDLRE 393
[Close]
BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A0S8AAT4_9GAMM (Replicative DNA helicase n=1 Tax=Gammaproteobacteria bacterium SG8_15 TaxID=1703403 RepID=A0A0S8AAT4_9GAMM)

HSP 1 Score: 268 bits (686), Expect = 6.160e-86
Identity = 136/168 (80.95%), Postives = 152/168 (90.48%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKT FA+NIA+HAA+K ++PVAVFSMEMP EQLAMRM+SSLGRIDQH++RTG+L DDDWPRLTHAVG L+EA MFIDDTPALTP+DLR+R RRL REHG+GLIVIDYLQLMQV G  ENR  EISEISRSLKALAKEL+ P+IALSQLNRSLE R +KRPVMSDLRE
Sbjct:  228 MGKTTFAMNIAEHAAVKMQVPVAVFSMEMPGEQLAMRMLSSLGRIDQHRVRTGKLDDDDWPRLTHAVGQLAEAPMFIDDTPALTPTDLRSRARRLMREHGLGLIVIDYLQLMQVRGGSENRTNEISEISRSLKALAKELNVPIIALSQLNRSLEQRPNKRPVMSDLRE 395
[Close]
BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Match: A0A2E0PVS7_9GAMM (Replicative DNA helicase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E0PVS7_9GAMM)

HSP 1 Score: 268 bits (686), Expect = 6.340e-86
Identity = 136/168 (80.95%), Postives = 153/168 (91.07%), Query Frame = 1 
Query:    1 MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKMRTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHGIGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLNRSLESRQDKRPVMSDLRE 504
            MGKTAFA+NIA++AAIK E  VA+FSMEMP EQLAMRMMSSLGRIDQHK+RTG+L DDDWPRLT AVG+L E +MFIDDTPALTP++LRARCRR++RE G+ L+V+DYLQLMQV GT ENRATEISEISRSLKA+AKEL  PVIALSQLNRSLESR D+RPVMSDLRE
Sbjct:  228 MGKTAFAVNIAENAAIKGEHSVAIFSMEMPGEQLAMRMMSSLGRIDQHKVRTGKLEDDDWPRLTSAVGMLQETRMFIDDTPALTPAELRARCRRISRESGLDLVVVDYLQLMQVAGTNENRATEISEISRSLKAMAKELKVPVIALSQLNRSLESRTDRRPVMSDLRE 395
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17724.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523P5V5_9PROT5.410e-9386.31Replicative DNA helicase n=1 Tax=Proteobacteria ba... [more]
A0A3D5DI66_9GAMM1.740e-9182.74Replicative DNA helicase n=1 Tax=Gammaproteobacter... [more]
A0A1G0G1W0_9GAMM6.000e-8984.52Replicative DNA helicase n=1 Tax=Gammaproteobacter... [more]
A0A1G0F2L0_9GAMM2.340e-8882.14Replicative DNA helicase n=1 Tax=Gammaproteobacter... [more]
A0A3M1DM85_9GAMM3.400e-8882.14Replicative DNA helicase n=1 Tax=Gammaproteobacter... [more]
A0A849MD12_9PROT5.600e-8781.55Replicative DNA helicase n=2 Tax=Proteobacteria Ta... [more]
A0A1G5PKX0_9GAMM2.060e-8682.74Replicative DNA helicase n=2 Tax=Thiohalomonas den... [more]
A0A6L8EIA2_9GAMM2.920e-8679.17Replicative DNA helicase n=1 Tax=Gammaproteobacter... [more]
A0A0S8AAT4_9GAMM6.160e-8680.95Replicative DNA helicase n=1 Tax=Gammaproteobacter... [more]
A0A2E0PVS7_9GAMM6.340e-8680.95Replicative DNA helicase n=1 Tax=Legionellales bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17724contigP-wetherbeei_contig17724:95..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog227377.CBU_0868
Preferred namednaB
PFAMsDnaB,DnaB_C
Model size504
Max annot lvl118969|Legionellales
KEGG koko:K02314
KEGG Pathwayko03030,ko04112,map03030,map04112
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.43e-83
EggNOG OGsCOG0305@1|root,COG1372@1|root,COG0305@2|Bacteria,COG1372@2|Bacteria,1MUG9@1224|Proteobacteria,1RPM2@1236|Gammaproteobacteria,1JD5F@118969|Legionellales
EC3.6.4.12
Descriptionit exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins
Cds size504
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.9665716-CDS-P-wetherbeei_contig17724:94..5981683186124.9665716-CDS-P-wetherbeei_contig17724:94..598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17724 95..598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17724.1.1prot_P-wetherbeei_contig17724.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17724 95..598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17724.1.1

>prot_P-wetherbeei_contig17724.1.1 ID=prot_P-wetherbeei_contig17724.1.1|Name=mRNA_P-wetherbeei_contig17724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MGKTAFAINIAQHAAIKEELPVAVFSMEMPSEQLAMRMMSSLGRIDQHKM
RTGRLSDDDWPRLTHAVGILSEAKMFIDDTPALTPSDLRARCRRLAREHG
IGLIVIDYLQLMQVPGTKENRATEISEISRSLKALAKELSCPVIALSQLN
RSLESRQDKRPVMSDLRE
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mRNA from alignment at P-wetherbeei_contig17724:95..598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17724.1.1 ID=mRNA_P-wetherbeei_contig17724.1.1|Name=mRNA_P-wetherbeei_contig17724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig17724:95..598+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTAAGACCGCGTTCGCTATCAACATCGCGCAGCATGCCGCTATCAA
GGAAGAACTGCCGGTCGCGGTGTTCAGTATGGAAATGCCGAGCGAACAGC
TCGCCATGCGCATGATGTCCTCGCTCGGTCGCATCGATCAGCACAAGATG
CGTACCGGTCGCCTGAGTGATGACGATTGGCCGCGCCTCACCCATGCGGT
CGGCATACTTTCCGAAGCAAAAATGTTCATCGACGATACGCCGGCGCTGA
CCCCCAGTGACTTGCGTGCGCGTTGCCGTCGGCTCGCGCGCGAGCATGGC
ATCGGCCTCATCGTCATCGATTATCTGCAGCTCATGCAGGTGCCGGGAAC
CAAGGAAAACCGCGCCACCGAGATTTCGGAGATCTCGCGTTCGCTGAAGG
CCTTGGCCAAGGAGTTGTCGTGTCCGGTGATCGCGCTCTCGCAGTTGAAC
CGCAGTCTCGAAAGCCGCCAGGACAAGCGCCCGGTGATGTCAGATCTGCG
CGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17724:95..598+

>mRNA_P-wetherbeei_contig17724.1.1 ID=mRNA_P-wetherbeei_contig17724.1.1|Name=mRNA_P-wetherbeei_contig17724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig17724:95..598+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTAAGACCGCGTTCGCTATCAACATCGCGCAGCATGCCGCTATCAA
GGAAGAACTGCCGGTCGCGGTGTTCAGTATGGAAATGCCGAGCGAACAGC
TCGCCATGCGCATGATGTCCTCGCTCGGTCGCATCGATCAGCACAAGATG
CGTACCGGTCGCCTGAGTGATGACGATTGGCCGCGCCTCACCCATGCGGT
CGGCATACTTTCCGAAGCAAAAATGTTCATCGACGATACGCCGGCGCTGA
CCCCCAGTGACTTGCGTGCGCGTTGCCGTCGGCTCGCGCGCGAGCATGGC
ATCGGCCTCATCGTCATCGATTATCTGCAGCTCATGCAGGTGCCGGGAAC
CAAGGAAAACCGCGCCACCGAGATTTCGGAGATCTCGCGTTCGCTGAAGG
CCTTGGCCAAGGAGTTGTCGTGTCCGGTGATCGCGCTCTCGCAGTTGAAC
CGCAGTCTCGAAAGCCGCCAGGACAAGCGCCCGGTGATGTCAGATCTGCG
CGAG
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