mRNA_P-wetherbeei_contig1772.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1772.1.1
Unique NamemRNA_P-wetherbeei_contig1772.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1772.1.1 vs. uniprot
Match: A0A2J8AIV3_9CHLO (DUF4470 domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV3_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 1.930e-19
Identity = 102/298 (34.23%), Postives = 134/298 (44.97%), Query Frame = 3 
Query:  108 PLAPVHLLALAMPDSANVMLRALVLCY-GADAELFK*ELLAHALLQAAGRPLSLVRVTYGMRPSFRC-------------RTAAMTRRSCSPSATVRRRLGSLPLAPLSNCWLCLVPVNFLPSESVFKRCWSWHVTLCTLSVDRDLSVAAVSV--KVSVLKAEPFVPPPWWPRPAPPRCGSTAAFFRCGLPGARCGYG-VSGRGEWTSSVVIGPLI--IAVDVAVPMPFPLAAEAGISSCVNGSAVVVAERKKGG-SGKAPSVNRFRFELQAGVRATSGPPRQVKMSRKPAPLSAKIA 941
            PL  VHLLALA P  A+ +LRAL+       A L K EL AHALLQA GRP  L R++Y  RP +               R      R   PSA V++ L +            L+P      ES+ ++C  W+VTL  L+     S+ AV V  +VS L  +    P  W   + PR              A  G G   GR  W  SV + P    +  DV  P P P A EA + + V   A++V  + KG  +G     + FR +L AGV A       VK+SRK   LSA++A
Sbjct: 1053 PLTLVHLLALAAPQQADALLRALLRAEPSGQASLLKWELSAHALLQA-GRPPPLRRLSYSARPGYNLLGHEQAPLLLAISREPLPAGRRVPPSA-VKQLLSAFAWDEERGAAQLLLP------ESIAEQCGGWYVTLAVLAASEGHSLLAVGVSERVSALAVQQQPAPVVWRGLSRPRSLGLELGLVEAAESAGSGAGEAGGRRGWQGSVRVCPDAGYMTADVLAPGPLPAAEEAAVLATVVDGALLVRVQPKGTKAGGGGGADEFRLQLPAGV-AAGATATDVKLSRKLGLLSARVA 1341
[Close]
BLAST of mRNA_P-wetherbeei_contig1772.1.1 vs. uniprot
Match: A0A0D2LWZ0_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LWZ0_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 2.200e-8
Identity = 99/312 (31.73%), Postives = 121/312 (38.78%), Query Frame = 3 
Query:  108 PLAPVHLLALAMPDSANVMLRALVLCYGAD-----AELFK*ELLAHALLQAAGRPLSLVRVTYGMRPSFRCRTAAMTRRSCSPSATVRRRLGSLPLA---PLSNCWLCLVPVNFLPSESVFKRCW------------SWHVTLCTLSVDRDLSVAAVSV----KVSVLKAE--PFVPPPWWPRPAPPRCGSTAAF-FRCGLPGARCGYGVSGRGEWTSSV--VIGPLIIAVDVAVPMPFPLAAEAGISSCVNGSAVVVAERKKGGSGK---APSVNRFRFELQ---AGVRATSGPPRQVKMSRKPAPLSAKI 938
            PLA   LLALA PD A  +LRAL+           A LF+ ELL H   QA      LVRVTY  +P     TA        P A +   +   PL    P++   L  +  +F   E      W            S HVTLC LS     + A V+V    K+  L+ E  P     W P  APP             L         +G  EW        G    AVDV  P P P A EA I++ V G A+ V    K G      A    RF   L    AG R TS     VK+SR+   L+A +
Sbjct:  303 PLALAQLLALAAPDHAPDLLRALIAAAAGGGGVIPARLFEAELLTHVGAQAGSASGPLVRVTYPAKPG----TALW---QYKPDAPLLLAVSQEPLVAGQPVAFKELQHLVCSFAYDEDAATAHWLTPEAAASGAAGSLHVTLCVLSDVGAAATALVAVGQSAKLCTLRREAVPAASAAWRPLAAPPPALEALDMDLLRELTWRLAAAAPAGEREWRGQACHAAGGAGAAVDVLAPGPLPAALEADITARVEGGALAVTVTPKQGXXXXXXAAVEERFVVALPEGCAGGRVTS-----VKLSRRLGLLTACV 602
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1772.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2J8AIV3_9CHLO1.930e-1934.23DUF4470 domain-containing protein (Fragment) n=1 T... [more]
A0A0D2LWZ0_9CHLO2.200e-831.73Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1772contigP-wetherbeei_contig1772:536..1595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size959
Hectar predicted targeting categorymitochondrion
Exons2
Cds size675
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.7813435-UTR-P-wetherbeei_contig1772:535..8191683186124.7813435-UTR-P-wetherbeei_contig1772:535..819Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1772 536..819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.7936227-CDS-P-wetherbeei_contig1772:819..11781683186124.7936227-CDS-P-wetherbeei_contig1772:819..1178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1772 820..1178 +
1683186124.8027399-CDS-P-wetherbeei_contig1772:1279..15951683186124.8027399-CDS-P-wetherbeei_contig1772:1279..1595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1772 1280..1595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1772.1.1prot_P-wetherbeei_contig1772.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1772 820..1595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1772.1.1

>prot_P-wetherbeei_contig1772.1.1 ID=prot_P-wetherbeei_contig1772.1.1|Name=mRNA_P-wetherbeei_contig1772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=225bp
MRPSFRCRTAAMTRRSCSPSATVRRRLGSLPLAPLSNCWLCLVPVNFLPS
ESVFKRCWSWHVTLCTLSVDRDLSVAAVSVKVSVLKAEPFVPPPWWPRPA
PPRCGSTAAFFRCGLPGARCGYGVSGRGEWTSSVVIGPLIIAVDVAVPMP
FPLAAEAGISSCVNGSAVVVAERKKGGSGKAPSVNRFRFELQAGVRATSG
PPRQVKMSRKPAPLSAKIALLPGP*
back to top

mRNA from alignment at P-wetherbeei_contig1772:536..1595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1772.1.1 ID=mRNA_P-wetherbeei_contig1772.1.1|Name=mRNA_P-wetherbeei_contig1772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1060bp|location=Sequence derived from alignment at P-wetherbeei_contig1772:536..1595+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCTGCTGGAGCTGATTCCGGCATGCAAGCGGTCCCCGCAGATCGGCGC
GGCGGCGTCGTCTGCGACAGCTTCATCAGCCGCGTCCACCTCTCAGCGTT
CCTGACACCGCTGGCGCCAGTCCACCTGCTGGCGCTGGCGATGCCCGACA
GCGCCAACGTCATGCTGCGCGCGCTCGTTCTCTGCTACGGCGCCGACGCC
GAACTTTTCAAATAGGAGCTGTTGGCCCACGCTCTCCTGCAGGCGGCCGG
GCGGCCTCTGTCGCTCGTCCGGGTGACATACGGCATGCGTCCGAGCTTTC
GCTGCCGCACTGCGGCGATGACACGCCGCTCGTGCTCACCATCAGCCACG
GTGCGCCGTCGGTTGGGGTCGTTGCCCCTGGCGCCGCTAAGTAATTGCTG
GCTTTGTTTGGTGCCGGTGAACTTCCTGCCCTCGGAGTCCGTCTTCAAAA
GGTGCTGGTCGTGGCACGTGACCCTGTGCACGTTGTCGGTCGATCGAGAT
CTGTCTGTTGCCGCGGTGTCGGTGAAAGTCTCGGTGCTGAAGGCGGAGCC
GTTCGTGCCGCCGCCGTGGTGGCCGCGGCCGGCCCCGCCTCGGTGCGGCA
GCACCGCTGCTTTCTTCCGATGCGGCCTTCCTGGAGCGCGCTGGTGTGCA
GACTGCTGCAGTAAGCGGAGGTGTAGCAAATATGGCGGCGGCGGTCCCAA
TGGGGGTGGCGGCGGCGCGGCGGTGGCGGGGATGGCGGCGCCAGCGGTTA
CGGTGTGTCCGGTCGCGGCGAATGGACCAGCTCCGTGGTAATTGGCCCAT
TGATCATAGCGGTCGACGTGGCGGTGCCGATGCCGTTCCCGCTGGCGGCC
GAGGCGGGAATATCGTCGTGCGTCAACGGCTCAGCAGTCGTTGTCGCCGA
ACGGAAGAAGGGCGGCAGTGGCAAGGCGCCTTCGGTTAACCGCTTCCGGT
TCGAGCTGCAGGCAGGCGTCCGCGCCACCTCGGGACCGCCGCGACAGGTC
AAAATGAGCCGGAAGCCGGCACCACTTTCGGCGAAAATTGCGCTGCTGCC
CGGCCCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1772:536..1595+

>mRNA_P-wetherbeei_contig1772.1.1 ID=mRNA_P-wetherbeei_contig1772.1.1|Name=mRNA_P-wetherbeei_contig1772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig1772:536..1595+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCCGAGCTTTCGCTGCCGCACTGCGGCGATGACACGCCGCTCGTG
CTCACCATCAGCCACGGTGCGCCGTCGGTTGGGGTCGTTGCCCCTGGCGC
CGCTAAGTAATTGCTGGCTTTGTTTGGTGCCGGTGAACTTCCTGCCCTCG
GAGTCCGTCTTCAAAAGGTGCTGGTCGTGGCACGTGACCCTGTGCACGTT
GTCGGTCGATCGAGATCTGTCTGTTGCCGCGGTGTCGGTGAAAGTCTCGG
TGCTGAAGGCGGAGCCGTTCGTGCCGCCGCCGTGGTGGCCGCGGCCGGCC
CCGCCTCGGTGCGGCAGCACCGCTGCTTTCTTCCGATGCGGCCTTCCTGG
AGCGCGCTGCGGTTACGGTGTGTCCGGTCGCGGCGAATGGACCAGCTCCG
TGGTAATTGGCCCATTGATCATAGCGGTCGACGTGGCGGTGCCGATGCCG
TTCCCGCTGGCGGCCGAGGCGGGAATATCGTCGTGCGTCAACGGCTCAGC
AGTCGTTGTCGCCGAACGGAAGAAGGGCGGCAGTGGCAAGGCGCCTTCGG
TTAACCGCTTCCGGTTCGAGCTGCAGGCAGGCGTCCGCGCCACCTCGGGA
CCGCCGCGACAGGTCAAAATGAGCCGGAAGCCGGCACCACTTTCGGCGAA
AATTGCGCTGCTGCCCGGCCCGTGA
back to top