mRNA_P-wetherbeei_contig17708.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17708.1.1
Unique NamemRNA_P-wetherbeei_contig17708.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17708.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17708contigP-wetherbeei_contig17708:109..1239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1131
Hectar predicted targeting categorysignal peptide
Exons1
Cds size696
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.419204-UTR-P-wetherbeei_contig17708:108..5431683186124.419204-UTR-P-wetherbeei_contig17708:108..543Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17708 109..543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.429477-CDS-P-wetherbeei_contig17708:543..12391683186124.429477-CDS-P-wetherbeei_contig17708:543..1239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17708 544..1239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17708.1.1prot_P-wetherbeei_contig17708.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17708 544..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17708.1.1

>prot_P-wetherbeei_contig17708.1.1 ID=prot_P-wetherbeei_contig17708.1.1|Name=mRNA_P-wetherbeei_contig17708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp
MAHVTLSMVLIASPPLLLLLLLLGASTFTFPSWFLAPSLFHELQPLVNVA
GPLAGTSKRAAMTAVGFGRRGASQVAEHPGPCGHDQARQLELSPLRDCAG
DHAGVATLSLGCVFTVAAALAAPAASLGIVASHATHGSRRNATGGCGGGF
AVGTAGARSCVETIAGALSGRCCADISTGFWVVQGGAFLLCVGFGAAWLL
ERRRVRALRAATDASRRLALYLSHEVRPLKH*
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mRNA from alignment at P-wetherbeei_contig17708:109..1239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17708.1.1 ID=mRNA_P-wetherbeei_contig17708.1.1|Name=mRNA_P-wetherbeei_contig17708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1131bp|location=Sequence derived from alignment at P-wetherbeei_contig17708:109..1239+ (Phaeothamnion wetherbeei SAG_119_79)
GAATCCAAATCTTTTCGATCTGTTTTTGGTGCGTCCCCACAGAAACGGCT
CCCCCACGGATTTAAGTTGAGGTTTGGAAGAAAAGTTGCTTTTCACCACG
GCAAAATATCTCCCTGTTTTCAAACTCGCACACTCGAGCCTTTGCATATT
TTGGTGGGATGGCTGCAGGTAGATTCCGGAGATGGAAGAACAGGAGCCAC
GTCGGCCGTTCTATTGAACAGTGTATCTTTTTCTCAGTCGTGCGTCCCGA
AGATCCGCTTGGATTGCATGATGCGGTCCTCAAAGTTATTGACCTCGTCA
CTGCGTGGGTGTCACCTCTATTCCAGCCATGCCTCCTTCGGACTGCTTTC
CCGACTAGCACACGAGAAGGACCAAGTCTGATCCTTCGTTCTTCCCACGA
AAGCCTGCACCAACTCTCGTGAATTAGCGGCGGCGATGGCCCATGTGACG
CTCTCCATGGTTCTCATCGCATCACCGCCGCTGCTGCTGCTACTTCTCCT
ACTCGGGGCGAGCACGTTCACCTTTCCGAGCTGGTTTCTCGCTCCCTCTC
TTTTCCACGAGCTACAACCCCTCGTCAATGTTGCCGGCCCACTGGCTGGA
ACTTCAAAGCGCGCCGCCATGACCGCCGTCGGCTTCGGCCGCCGCGGCGC
ATCGCAGGTCGCGGAACACCCGGGACCATGTGGGCATGACCAAGCGAGGC
AACTTGAACTTTCACCCCTTCGCGACTGCGCAGGCGACCATGCGGGCGTC
GCCACGTTGTCGCTCGGCTGCGTCTTCACCGTCGCCGCTGCTCTCGCCGC
CCCTGCCGCCTCTCTTGGCATCGTGGCAAGTCACGCTACTCATGGCAGCC
GAAGAAACGCAACTGGCGGCTGCGGCGGCGGCTTCGCCGTCGGTACGGCT
GGCGCCAGGAGTTGCGTAGAAACTATCGCCGGCGCGCTCAGTGGCCGCTG
CTGCGCCGATATTTCGACTGGGTTTTGGGTCGTCCAAGGTGGCGCCTTCC
TGCTGTGCGTGGGCTTCGGCGCGGCGTGGCTGCTGGAACGACGCCGCGTC
AGAGCCCTTCGAGCGGCGACCGACGCCAGCCGGCGCCTCGCTCTGTACCT
GAGCCACGAGGTACGGCCCCTTAAACACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17708:109..1239+

>mRNA_P-wetherbeei_contig17708.1.1 ID=mRNA_P-wetherbeei_contig17708.1.1|Name=mRNA_P-wetherbeei_contig17708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig17708:109..1239+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCATGTGACGCTCTCCATGGTTCTCATCGCATCACCGCCGCTGCT
GCTGCTACTTCTCCTACTCGGGGCGAGCACGTTCACCTTTCCGAGCTGGT
TTCTCGCTCCCTCTCTTTTCCACGAGCTACAACCCCTCGTCAATGTTGCC
GGCCCACTGGCTGGAACTTCAAAGCGCGCCGCCATGACCGCCGTCGGCTT
CGGCCGCCGCGGCGCATCGCAGGTCGCGGAACACCCGGGACCATGTGGGC
ATGACCAAGCGAGGCAACTTGAACTTTCACCCCTTCGCGACTGCGCAGGC
GACCATGCGGGCGTCGCCACGTTGTCGCTCGGCTGCGTCTTCACCGTCGC
CGCTGCTCTCGCCGCCCCTGCCGCCTCTCTTGGCATCGTGGCAAGTCACG
CTACTCATGGCAGCCGAAGAAACGCAACTGGCGGCTGCGGCGGCGGCTTC
GCCGTCGGTACGGCTGGCGCCAGGAGTTGCGTAGAAACTATCGCCGGCGC
GCTCAGTGGCCGCTGCTGCGCCGATATTTCGACTGGGTTTTGGGTCGTCC
AAGGTGGCGCCTTCCTGCTGTGCGTGGGCTTCGGCGCGGCGTGGCTGCTG
GAACGACGCCGCGTCAGAGCCCTTCGAGCGGCGACCGACGCCAGCCGGCG
CCTCGCTCTGTACCTGAGCCACGAGGTACGGCCCCTTAAACACTGA
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