mRNA_P-wetherbeei_contig17707.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17707.1.1
Unique NamemRNA_P-wetherbeei_contig17707.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.680e-40
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    1 SLTSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV 282
            SLT+GG+VLPDQ+ ++P+EG VVA GPGR HPHT ELIPMCVAPG RVM+S++SG+KVKY   +H++ITDDDLLLVY G+  T  +LKM+RDQV
Sbjct:   81 SLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQV 174          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.130e-34
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 SLTSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV 282
            S T+GG+VLPD+ ++ P EG VVA GPGR HP TG LIPMCV+ GD V+FSR+SGRKVKY  E+H  I DDDL+LVY G  +T DSLKMVRDQV
Sbjct:   93 SRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTEDSLKMVRDQV 186          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.250e-29
Identity = 49/93 (52.69%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 LTSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV 282
            +++GG+VLPDQ KE+PTEG VVAAGPGR HP T  L+PM V PG +V++ +F G  V Y    H +I DDD+LL +TG ++T+D+++ VRD++
Sbjct:   76 MSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRI 168          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: A0A7S2HPA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HPA1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.850e-28
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 SLTSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV 282
            S T GG++LPDQ+KERPTEG VVAAGPG+ HPHTG  I   V+PG  V+F +F+G  + Y DE+  MI DDD+L+ Y G ++T+D++  VRD V
Sbjct:   93 SATGGGILLPDQSKERPTEGEVVAAGPGKLHPHTGIRIHNPVSPGTNVLFGKFAGTALTYNDEDMQMIRDDDVLMYYDGVSMTLDNVVPVRDYV 186          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: A0A7S2SUC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUC7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.010e-27
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    7 TSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQ 279
            T+GG+VLPDQ KE+PTEG V+A GPG+ H  T   +PMCV+ G RV++ ++ G K++Y  ++H+++ DDD+LLV+ GD +T+DS+    D+
Sbjct:   64 TTGGIVLPDQAKEKPTEGVVIAVGPGKIHHETTVQLPMCVSAGQRVLYGKYDGSKLEYNGKDHTLVRDDDILLVFEGDEMTLDSVAPASDR 154          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: A0A7S1UQU6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQU6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 8.370e-27
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 SLTSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV 282
            + T+GG++LPD+ KERPTEG V+AAGPG+ HPHTG  I   V  GD V++  F G  +KY DEE  MI DDD+LL Y G A+T+D+++  RD V
Sbjct:  110 TATTGGILLPDEAKERPTEGVVIAAGPGKLHPHTGIRIHNPVKAGDSVLYGMFDGAPIKYNDEECQMIRDDDVLLFYEGAAMTLDNVQPCRDYV 203          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.050e-26
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    7 TSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV 282
            T+GG+++P+  K+RP +G  VA GPGRYHP TG+L+P+ V  G+RVM+  + G K+KY +E+H ++ +D++LL YTGD +  D+++ V D+V
Sbjct:   60 TAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKV 151          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: A0A7S2E919_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E919_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.910e-26
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 SLTSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV 282
            S T GG++LPDQ+KERPTEG VVAAGPG+ HPHTG  I   V  G  V++ +F+G  + Y DE+  MI DDD++L Y G ++T D++  VRD V
Sbjct:   93 SATGGGILLPDQSKERPTEGEVVAAGPGKLHPHTGTRITNPVTAGVNVLYGKFAGTPLNYNDEDMQMIRDDDIMLYYDGVSMTRDNVVPVRDYV 186          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: A0A7S2LH03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LH03_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.950e-25
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    1 SLTSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRD 276
            + ++GG++LPDQ+K R TEG VVAAGPGR HPHTG  I   V PG  V++  F G ++KY DE+  MI DDD+LL Y+G  +T++++   RD
Sbjct:   83 TASAGGILLPDQSKRRATEGEVVAAGPGRLHPHTGVRISCPVDPGQNVLYGLFDGTQIKYNDEDMQMIRDDDILLYYSGPMMTLENVTPCRD 174          
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Match: K0R458_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R458_THAOC)

HSP 1 Score: 103 bits (257), Expect = 3.560e-25
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    7 TSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMFSRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV 282
            T GG++LPDQ+KERPTEG VVAAGPG+ HPHTG  I   V+ GD V+F +F G  ++Y +E  +MI DDD+LL Y G  +T++++   RD V
Sbjct:   77 TDGGILLPDQSKERPTEGEVVAAGPGKLHPHTGVRIVNPVSTGDSVLFGKFDGHDMEYNNEPVTMIRDDDVLLHYKGVRMTMENVSPCRDYV 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17707.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YHA6_9STRA8.680e-4068.09Chaperonin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
D7G6K9_ECTSI1.130e-3467.02Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
W7TNB8_9STRA6.250e-2952.6920 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S2HPA1_9STRA2.850e-2855.32Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2SUC7_9STRA2.010e-2748.35Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1UQU6_9STRA8.370e-2754.26Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9UAA2_9STRA1.050e-2646.74Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2E919_9STRA2.910e-2653.19Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2LH03_9STRA1.950e-2551.09Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
K0R458_THAOC3.560e-2553.26Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17707contigP-wetherbeei_contig17707:163..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0R458
PFAMsCpn10
Model size282
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.83e-26
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota,2XGQX@2836|Bacillariophyta
DescriptionBelongs to the GroES chaperonin family
Cds size282
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.3690178-CDS-P-wetherbeei_contig17707:162..1981683186124.3690178-CDS-P-wetherbeei_contig17707:162..198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17707 163..198 +
1683186124.380409-CDS-P-wetherbeei_contig17707:444..5791683186124.380409-CDS-P-wetherbeei_contig17707:444..579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17707 445..579 +
1683186124.3904052-CDS-P-wetherbeei_contig17707:1151..12621683186124.3904052-CDS-P-wetherbeei_contig17707:1151..1262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17707 1152..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17707.1.1prot_P-wetherbeei_contig17707.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17707 163..1262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17707.1.1

>prot_P-wetherbeei_contig17707.1.1 ID=prot_P-wetherbeei_contig17707.1.1|Name=mRNA_P-wetherbeei_contig17707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
SLTSGGVVLPDQTKERPTEGRVVAAGPGRYHPHTGELIPMCVAPGDRVMF
SRFSGRKVKYQDEEHSMITDDDLLLVYTGDAVTVDSLKMVRDQV
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mRNA from alignment at P-wetherbeei_contig17707:163..1262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17707.1.1 ID=mRNA_P-wetherbeei_contig17707.1.1|Name=mRNA_P-wetherbeei_contig17707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1100bp|location=Sequence derived from alignment at P-wetherbeei_contig17707:163..1262+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCTGACCTCCGGTGGCGTCGTCCTACCAGATCAGGTGATCTGAGCGGC CGCCACTGTCACGGAAGATTGGTTGACATGTCAGCGACATGTGTTCTTTG ATGCGGCAGTGTGTACTATATCACAGAGGTCGTTTCCATCTCCATATCAT ATGTGTCGCAGCTCGCTTCAGAAATCTACTCGCTTCTTAGGGGCCAAAGA GCAAACATATACTTCTGGATTTCGTGCAAGCTCATCAACTTGTCATCGCA CCTCTGTCCGCCTTGTCCCGCGCTGTTAACAGACAAAGGAGCGGCCGACG GAGGGGCGGGTGGTGGCGGCGGGTCCCGGGCGCTACCACCCGCACACGGG GGAGCTGATCCCCATGTGCGTCGCCCCCGGCGACCGCGTCATGTTCAGCC GCTTCAGCGGGCGCAAGGTGCGTTTTCGGCCGAAGTCGTTTGGCCCCGTC TAATTGGGTGTTTGCCGCTGTGTGAAGTCATGTCTGCTGAGAGACATTGT GGAGCTCTTCTTTGCTGCTCAAAAATTGCCAGTACCGCAGTGGCGTCCTT CTGCTGCTTCATCCCGTGTTCCGTCCGGTGTCCCTCATTCCACTGTCGCT TGATGCTTTGAACGCCTCTACGTGGCGGCGCTTTTGGGCGATCGCTCCTT CCGGCTCTGCCTTTCAAACACATGGCTGCGTACGACGAACGGCGGCGGCG AAAACGGCGGACGTCTGCGGCGGTCTGTACACTCTGTGGCGGCGAAAACT GCGGCGGCAACGACGGTGGTGGTGAAACGGCGGCAACCGCGGCGGCGGCG AAAACCGCGGCAAAAACGTGGCGGCGGCGGCGGCGGCGGCGGCATCCGCG ACTGCGTGTTCTACCCGTCGGGCCTGATTGGTTGCTGTCCGCGACGGCAC CGGCTGCGACGACATTCTGACTGATCCGACGCGGCGCGGTGATGAACACT CGAACGGGAACACACCAACAAATGGCGATGGTAGAACAGGTGAAGTACCA GGACGAGGAGCACAGCATGATCACTGATGACGACCTCCTGCTTGTCTACA CTGGCGACGCAGTCACCGTCGACAGCCTCAAGATGGTGCGCGACCAGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17707:163..1262+

>mRNA_P-wetherbeei_contig17707.1.1 ID=mRNA_P-wetherbeei_contig17707.1.1|Name=mRNA_P-wetherbeei_contig17707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig17707:163..1262+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCTGACCTCCGGTGGCGTCGTCCTACCAGATCAGACAAAGGAGCGGCC
GACGGAGGGGCGGGTGGTGGCGGCGGGTCCCGGGCGCTACCACCCGCACA
CGGGGGAGCTGATCCCCATGTGCGTCGCCCCCGGCGACCGCGTCATGTTC
AGCCGCTTCAGCGGGCGCAAGGTGAAGTACCAGGACGAGGAGCACAGCAT
GATCACTGATGACGACCTCCTGCTTGTCTACACTGGCGACGCAGTCACCG
TCGACAGCCTCAAGATGGTGCGCGACCAGGTC
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