mRNA_P-wetherbeei_contig17705.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17705.1.1
Unique NamemRNA_P-wetherbeei_contig17705.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A7S3XUN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUN7_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 5.110e-13
Identity = 35/84 (41.67%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  256 ELEKRLQESLETARLEVRRREEAAREQ-------TLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            +LE+ L+  LE      RR+E+  +EQ       TLC +C++RAK+VL+LPCRH+CLC++C+++ +L ACP+CR+ +  +I  +
Sbjct:   60 DLEQDLKACLEAT---TRRKEKVTKEQLDNAAASTLCVVCQERAKTVLILPCRHMCLCQECSENQSLKACPLCRIEIESKIQAF 140          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A7S2G914_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G914_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.520e-12
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  145 RRTSDSGLARGWRSGLSRFAQPLTADEAAAADPPTLAELEKRLQESLETARLEVRRREEAA----REQTLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            R T D+  AR    GL +  + L  ++      P+L  LE  L+ SL     E  R  +A     REQ LC +C++R KS L+LPCRHLCLC+ C++   L +CP+CR  +  +I VY
Sbjct:   84 RLTEDAARAR----GLEQEVRQLRGEDIKGLSMPSLDALEVTLRTSLGAVGRERERLLQARVMNEREQRLCVVCQEREKSCLILPCRHLCLCKDCSRRSELKSCPLCRKPIEQKIDVY 197          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A482S6W3_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6W3_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 5.000e-12
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  304 VRRREEAAREQTLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            +R + EA +EQ LC IC++  K+V+LLPCRHLCLC  C+ H  L  CP+CR  ++ +I+V+
Sbjct:   76 IRSQIEAQKEQRLCVICQENEKTVVLLPCRHLCLCDGCSVHSALDMCPLCREAIVHKISVF 136          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A7S2FB17_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FB17_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.600e-11
Identity = 27/61 (44.26%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  304 VRRREEAAREQTLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            ++R++E  R++ LC +C+D  K  LL+PCRHLC+C+ C+ H  L  CP+CR T+  ++ VY
Sbjct:  231 IQRQQERDRDEKLCVVCQDAEKETLLMPCRHLCVCKNCSSHVALDRCPVCRTTIEMKLNVY 291          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A7S3H223_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H223_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.990e-11
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  256 ELEKRLQESLETARLE----VRRREEAAREQTLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            ELEK L+ +LE    +    +R +    +EQ +C +C++  KSV+LLPCRHLC+C  C+ HD L  CP+CR  +  +I+V+
Sbjct:   53 ELEKSLKTALERIEAKKAVLIRNQIGNQKEQRVCVVCQEHEKSVVLLPCRHLCVCDVCSTHDLLKMCPLCREPIAHKISVF 133          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A812S5N9_SYMMI (Rnf26 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S5N9_SYMMI)

HSP 1 Score: 68.6 bits (166), Expect = 9.810e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  301 EVRRREEAAREQTLCCICRDRAKSVLLLPCRHLCLCRQCAQHDT---LGACPICRVTVMDRIAVY 486
            + +RR+E   E  LCC+CRD  K+VLLLPC+HLCLC  C++H +   + +CP+CR  V D + VY
Sbjct:  188 DAQRRDET--ENALCCVCRDNNKTVLLLPCKHLCLCEVCSEHISTRRMTSCPVCRQAVSDALRVY 250          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A7S3XJT7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJT7_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 1.720e-10
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  238 DPPTLAELEKRLQESLETARLEVRRREEAAREQ--------TLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            D  T+AE E RL++SL+      RR +E   +Q        T+C +C++ AKSVL+LPCRHLCLC+ C+++  L  CP+CR  +  +I  +
Sbjct:   88 DQMTVAETE-RLEQSLQDYISAARRHKEKLLQQKLDMAEASTVCVVCQEHAKSVLILPCRHLCLCQGCSENQLLRTCPLCRENIESKIQTF 177          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A7S2D6M8_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6M8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.100e-10
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  304 VRRREEAAREQTLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            ++R+ E  R++ LC IC+D  K  LLLPCRHLC+CR CA H  L  CP+CR  +   I  Y
Sbjct:  606 LQRKREQERDERLCVICQDAQKQTLLLPCRHLCVCRACAGHTALDKCPVCRAKIESTIDAY 666          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: D7FNM1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM1_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.910e-10
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  250 LAELEKRLQESLETA---RLEVRRREEAAREQTLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            L  LEK L+++LE     R  + +++ A  EQ LC +C++  +SVLLLPCRHLC+CR C++   L  CP+CR  + + + VY
Sbjct:  107 LEHLEKDLRKALEGVCGERDRIVQQQLAKEEQRLCVVCQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVY 188          
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Match: A0A7S2C4Y0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4Y0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.840e-10
Identity = 27/61 (44.26%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  304 VRRREEAAREQTLCCICRDRAKSVLLLPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVY 486
            +R + +  R+Q LC IC++  K+ LLLPCRHLCLC++C++ + L  CP+CR  +  +I V+
Sbjct:  119 LREQADTERDQRLCVICQENEKNTLLLPCRHLCLCKECSRREELDKCPLCRKGIDQKIDVF 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17705.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XUN7_HETAK5.110e-1341.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G914_9STRA4.520e-1238.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482S6W3_9ARCH5.000e-1249.18RING-type domain-containing protein n=1 Tax=archae... [more]
A0A7S2FB17_9STRA5.600e-1144.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3H223_9STRA6.990e-1141.98Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812S5N9_SYMMI9.810e-1149.23Rnf26 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3XJT7_HETAK1.720e-1040.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2D6M8_9STRA2.100e-1049.18Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
D7FNM1_ECTSI2.910e-1042.68RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2C4Y0_9STRA4.840e-1044.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17705contigP-wetherbeei_contig17705:731..1269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNM1
PFAMszf-C3HC4_3
Model size539
Max annot lvl2759|Eukaryota
KEGG koko:K15693
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
Exons1
Evalue5.7e-12
EggNOG OGsKOG4265@1|root,KOG4265@2759|Eukaryota
Descriptionubiquitin-protein transferase activity
Cds size411
COG categoryKL
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.3144164-UTR-P-wetherbeei_contig17705:730..8111683186124.3144164-UTR-P-wetherbeei_contig17705:730..811Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17705 731..811 +
1683186124.3408005-UTR-P-wetherbeei_contig17705:1222..12691683186124.3408005-UTR-P-wetherbeei_contig17705:1222..1269Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17705 1223..1269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.3266857-CDS-P-wetherbeei_contig17705:811..12221683186124.3266857-CDS-P-wetherbeei_contig17705:811..1222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17705 812..1222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17705.1.1prot_P-wetherbeei_contig17705.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17705 812..1222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17705.1.1

>prot_P-wetherbeei_contig17705.1.1 ID=prot_P-wetherbeei_contig17705.1.1|Name=mRNA_P-wetherbeei_contig17705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MEPLGHGGNSGRNGSRWRRHRRRTSDSGLARGWRSGLSRFAQPLTADEAA
AADPPTLAELEKRLQESLETARLEVRRREEAAREQTLCCICRDRAKSVLL
LPCRHLCLCRQCAQHDTLGACPICRVTVMDRIAVYP*
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mRNA from alignment at P-wetherbeei_contig17705:731..1269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17705.1.1 ID=mRNA_P-wetherbeei_contig17705.1.1|Name=mRNA_P-wetherbeei_contig17705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=539bp|location=Sequence derived from alignment at P-wetherbeei_contig17705:731..1269+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGGCAGAGGCCGCAGCGGCGGCAGCGGGAGCAGCGGCGGCGACAGCTG CAGTAGCGGAAAGGAGGAGGACGAAAGCGTCATGGAGCCGCTCGGTCACG GCGGCAACAGCGGGCGCAATGGCTCTCGTTGGCGCCGACACCGACGCCGC ACTTCTGACAGCGGATTGGCCCGCGGCTGGCGCAGCGGCCTCTCGCGTTT CGCGCAGCCGCTGACGGCGGATGAAGCGGCGGCGGCAGACCCGCCAACGC TGGCGGAGCTGGAAAAGCGGCTGCAGGAAAGTTTGGAGACGGCGCGGCTA GAGGTCCGGCGGCGGGAGGAGGCCGCTAGGGAGCAGACGCTGTGTTGCAT CTGTCGGGACCGCGCCAAGTCCGTGCTGCTGCTGCCGTGCCGCCACCTTT GCCTCTGCCGGCAATGCGCCCAACACGACACACTGGGGGCGTGCCCGATC TGCCGGGTCACTGTGATGGACCGAATCGCCGTGTACCCGTGAACAAAAAC TTCCAAGCAAGACGGACAGTAGAGGATAATATATGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17705:731..1269+

>mRNA_P-wetherbeei_contig17705.1.1 ID=mRNA_P-wetherbeei_contig17705.1.1|Name=mRNA_P-wetherbeei_contig17705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig17705:731..1269+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCCGCTCGGTCACGGCGGCAACAGCGGGCGCAATGGCTCTCGTTG
GCGCCGACACCGACGCCGCACTTCTGACAGCGGATTGGCCCGCGGCTGGC
GCAGCGGCCTCTCGCGTTTCGCGCAGCCGCTGACGGCGGATGAAGCGGCG
GCGGCAGACCCGCCAACGCTGGCGGAGCTGGAAAAGCGGCTGCAGGAAAG
TTTGGAGACGGCGCGGCTAGAGGTCCGGCGGCGGGAGGAGGCCGCTAGGG
AGCAGACGCTGTGTTGCATCTGTCGGGACCGCGCCAAGTCCGTGCTGCTG
CTGCCGTGCCGCCACCTTTGCCTCTGCCGGCAATGCGCCCAACACGACAC
ACTGGGGGCGTGCCCGATCTGCCGGGTCACTGTGATGGACCGAATCGCCG
TGTACCCGTGA
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