mRNA_P-wetherbeei_contig17695.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A1D1ZYC2_AUXPR (TFIIB-type domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZYC2_AUXPR) HSP 1 Score: 98.2 bits (243), Expect = 7.470e-22 Identity = 48/126 (38.10%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 34 YHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGR--DKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
+ RC EC D + D ++GD++CR CG+V++ ++ + EWR F + D DP+RVGGP++ LL DGGL T GG+ DK L S+L++ A +++ A + +L+A F + + D+ L D V
Sbjct: 12 FEQRCPECGESDFVEDHSSGDLICRSCGMVVEAHVIDERSEWRTFAEKDKESADPTRVGGPINPLLKDGGLSTMITGGKGVDKGLTSSLQRMQARTDS-GAGDRSLVAAFREIGRLCSDMSLQDVV 136
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A2P6VAI3_9CHLO (Transcription initiation factor IIB-2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VAI3_9CHLO) HSP 1 Score: 96.3 bits (238), Expect = 4.070e-21 Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 1
Query: 1 VGAMTIGVVAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLDDSGGK--DPSRVGGPLDNLLSDGGLGTF--TVGGRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
+G +G+ Y +C +C D + D A+GD++CR CGVV++ ++ + EWR F D GG DP+RVGGP+++LLSDGG+ T G D L L++ A + + + ALIA F + I +RL D+V
Sbjct: 1 MGDFDVGLRLKYEQQCPDCGLSDFVEDHASGDLICRNCGVVVEAHVIDERSEWRTFADKDGGAGADPNRVGGPVNHLLSDGGMSTMIGAAKGVDHGLVRNLQRMQARTEVTT--DRALIAAFREIGKICSAMRLLDTV 136
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A2P6TTX1_CHLSO (Transcription initiation factor IIB-2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTX1_CHLSO) HSP 1 Score: 95.5 bits (236), Expect = 7.790e-21 Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 1 VGAMTIGVVAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLDDSGGK--DPSRVGGPLDNLLSDGGLGTFTVG--GRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
+G I + Y +C +C D + D A+GD++CR CGVV++ ++ + EWR F D GG DP+RVGGP+++LLSDGG+ T G G D L L++ A + + + ALIA F+ + I +RL D+V
Sbjct: 1 MGDFNINLRLKYEQQCPDCGLSDFVEDHASGDLICRNCGVVVEAHVIDERSEWRTFGDKDGGSGVDPNRVGGPVNHLLSDGGMSTMIGGAKGVDHGLVRNLQRMQARTEVTT--DRALIAAFKEIGKICAAMRLLDTV 136
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: E1ZH39_CHLVA (TFIIB-type domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZH39_CHLVA) HSP 1 Score: 94.4 bits (233), Expect = 1.840e-20 Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 1
Query: 34 YHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLDD--SGGKDPSRVGGPLDNLLSDGGLGTFTVGGR--DKALRSALRKGSAISNAKSANET--ALIACFERVKDIAHDLRLHDSV 402
Y +C +C D + D A+GD+VCR CGVV++ ++ + EWR F D SGG DP+RVGGP+++LLSDGG+ T GG+ D AL +R+ A T A+IA F + I ++L D+V
Sbjct: 12 YEQQCPDCGQSDFVEDHASGDLVCRNCGVVVEAHVIDERSEWRTFADKVHSGGSDPNRVGGPVNHLLSDGGMSTMIGGGKGVDHAL---VREAGGCWPAGDGVTTDRAVIAAFREIGKICAAMKLLDTV 137
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A7S0RRQ4_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RRQ4_9CHLO) HSP 1 Score: 85.1 bits (209), Expect = 5.500e-17 Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 25 VAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRL 390
+A +C +C+G + D A GD+VC+GCG+V++ ++ + EWR F D D DP+RVGGP + LL GGL T GRD L + SN + AL+A F+ + D+ L L
Sbjct: 1 MATQERKCPDCNGIHFVEDHANGDIVCKGCGLVVEAHIIDERSEWRTFSDKDKESADPNRVGGPTNQLLEGGGLSTVIGKGRDGDANYMLNRLHTRSNNP---DRALVAAFKTLGDMCERLSL 120
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A059LIB9_9CHLO (TFIIB-type domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LIB9_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 7.760e-17 Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 1
Query: 34 YHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGR--DKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
Y +C EC + D +AGD++C+ CG V + ++ + EWR F D D G DPSRVGG ++ LLSDGGL T G+ D+ L + L++ A ++ AL+ F + I ++L D V
Sbjct: 10 YEQQCAECGDSNFEEDHSAGDLICKSCGTVAESRLIDERSEWRSFADGDKDGADPSRVGGAVNPLLSDGGLSTVLGAGKGVDRGLAANLQRMQA--RGAGVSDRALLTAFREIGKICSVMQLPDVV 133
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A250XC86_9CHLO (TFIIB-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XC86_9CHLO) HSP 1 Score: 82.0 bits (201), Expect = 7.500e-16 Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query: 43 RCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRL 390
+C +C G + D AAGD+VC+GCG+V++ ++ + EWR F D D DPSRVGGP + LL GGL T ++ L + + + E LI F+++ D+ L L
Sbjct: 6 KCPDCGGYQFVEDHAAGDIVCKGCGLVVESHIIDERSEWRTFSDKDKDTADPSRVGGPSNPLLEGGGLSTVIGKAQNDPLGLSYSLNRLHTRGGNNPERNLITAFKKISDMCDQLSL 122
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A0D2MAW9_9CHLO (Transcription initiation factor IIB n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MAW9_9CHLO) HSP 1 Score: 79.0 bits (193), Expect = 8.110e-16 Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 13 TIGVVAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVG 261
T GV C C G+D++ + GD+VC+GCG+V++ ++ + EWR F D D G DPSRVGG + LL DGGLGT T+G
Sbjct: 5 TEGVGPRLERSCPNCGGKDMVEVHSEGDIVCKGCGLVVEDHIIDERSEWRTFGDKDKEGDDPSRVGGATNLLLDDGGLGT-TIG 87
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A7R9VQN9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VQN9_9CHLO) HSP 1 Score: 82.0 bits (201), Expect = 8.820e-16 Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query: 43 RCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGRDKALRSALRKGSAIS----NAKSANETALIACFERVKDIAHDLRLHDSV 402
+C +C G + D A GDVVCRGCG+V+Q+ ++ + EWR F D D G DP+RVGGP + LL GG G TV G+ + G++ S +A+SA + ++A F+ + ++ L + +++
Sbjct: 11 KCPDCGGTSFVEDHAQGDVVCRGCGLVVQEHIIDERSEWRTFSDKDKEGTDPNRVGGPSNPLL--GGAGLSTVIGKVQG-----DAGNSFSLSRLHARSAQDRNMMAAFKLIGNMCEQLTVVNTI 128
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A833VGQ4_9POAL (Transcription initiation factor IIB-2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VGQ4_9POAL) HSP 1 Score: 80.9 bits (198), Expect = 1.240e-15 Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 1
Query: 46 CTECHGEDIIT-DEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLDDSGGKDPSRVGGPLDNLLSDGGLGTFTV---GGRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
CT+C E ++ D +AGD +C CG+VL+ + +T EWR F ++S DP RVGGP++ LLSDGGL T G R S L + + N +S N+ LI F ++ +A L L +++
Sbjct: 10 CTDCKRETVVVFDHSAGDTICSECGLVLEARSIDETSEWRTFANESSDNDPVRVGGPINPLLSDGGLSTVIAKSSGTRSDQRYSQLGR---LQNRES-NDGRLIQAFGKISIMADRLGLVNTI 128 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17695.1.1 >prot_P-wetherbeei_contig17695.1.1 ID=prot_P-wetherbeei_contig17695.1.1|Name=mRNA_P-wetherbeei_contig17695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp MTIGVVAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWback to top mRNA from alignment at P-wetherbeei_contig17695:4..405- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17695.1.1 ID=mRNA_P-wetherbeei_contig17695.1.1|Name=mRNA_P-wetherbeei_contig17695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig17695:4..405- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17695:4..405- >mRNA_P-wetherbeei_contig17695.1.1 ID=mRNA_P-wetherbeei_contig17695.1.1|Name=mRNA_P-wetherbeei_contig17695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig17695:4..405- (Phaeothamnion wetherbeei SAG_119_79)back to top |