mRNA_P-wetherbeei_contig1769.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1769.3.1
Unique NamemRNA_P-wetherbeei_contig1769.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1769.3.1 vs. uniprot
Match: A0A835Z6B4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.750e-31
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:   10 FTWAIGGFRVVKEAGPFGAQHAEYQIVASFGEQVWAVWVRFSAFGRFVDVVKHHSHYKKTLKAWARVKREQRMWRCLDVSYLKVKCLLLEDFLRLALFDAGSPAHLLYLL 339
            F W IGGFR+V+ A   G++HAEYQ++AS+G++ W  W+R SAFGRF         +  + KAW +++  QR++RCLDV+YL  KC +LE+FLRLALFDAG    LL L+
Sbjct:   68 FAWGIGGFRIVRIAS--GSKHAEYQVLASYGDRTWTRWIRSSAFGRFAKACCEQRGWAASTKAWKQIQTTQRLFRCLDVNYLLNKCHMLENFLRLALFDAGDAQPLLELV 175
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BLAST of mRNA_P-wetherbeei_contig1769.3.1 vs. uniprot
Match: A0A835YXN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.560e-19
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:   10 FTWAIGGFRVVKEAGPFGAQHAEYQIVASFGEQVWAVWVRFSAFGRFVDVVKHHSHYKKTLKAWARVKREQRMWRCLDVSYLKVKCLLLEDFLRLALFDAGSPAHLL 330
            F W IGGFR+V+  G  G++HAE+Q++A +G+  WA W+R++ F + +       H+ +    W  VK  Q  +RCL+  YL+ KCLLLE +L   LFDA     LL
Sbjct:  103 FAWGIGGFRIVR--GSAGSRHAEFQVLARYGDTSWAAWIRWTEFEQKL-AEGPAKHWHRAACCWCDVKANQPWYRCLNTEYLRRKCLLLEGYLSQVLFDAPEVNQLL 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1769.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z6B4_9STRA1.750e-3150.91Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YXN3_9STRA2.560e-1941.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1769contigP-wetherbeei_contig1769:6289..6642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FHG1
PFAMszf-RING_2
Model size354
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.89e-17
EggNOG OGs2C38U@1|root,2RHZN@2759|Eukaryota
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186123.3731196-CDS-P-wetherbeei_contig1769:6288..66421683186123.3731196-CDS-P-wetherbeei_contig1769:6288..6642Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1769 6289..6642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1769.3.1prot_P-wetherbeei_contig1769.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1769 6289..6642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1769.3.1

>prot_P-wetherbeei_contig1769.3.1 ID=prot_P-wetherbeei_contig1769.3.1|Name=mRNA_P-wetherbeei_contig1769.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
PVAFTWAIGGFRVVKEAGPFGAQHAEYQIVASFGEQVWAVWVRFSAFGRF
VDVVKHHSHYKKTLKAWARVKREQRMWRCLDVSYLKVKCLLLEDFLRLAL
FDAGSPAHLLYLLGVHC*
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mRNA from alignment at P-wetherbeei_contig1769:6289..6642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1769.3.1 ID=mRNA_P-wetherbeei_contig1769.3.1|Name=mRNA_P-wetherbeei_contig1769.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig1769:6289..6642+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGTGGCGTTCACCTGGGCCATCGGCGGCTTCCGCGTGGTCAAGGAGGC
GGGCCCCTTCGGTGCGCAGCACGCCGAGTACCAGATCGTCGCCAGCTTTG
GTGAGCAGGTCTGGGCTGTCTGGGTGCGCTTTTCGGCCTTCGGGCGCTTC
GTGGACGTGGTGAAGCACCACTCACACTACAAGAAGACGCTCAAGGCGTG
GGCCCGCGTCAAGCGCGAGCAAAGGATGTGGCGGTGCCTCGACGTGTCAT
ACCTGAAGGTCAAGTGCCTGCTGCTCGAAGACTTCCTGCGGTTGGCGCTC
TTCGACGCCGGCAGCCCCGCCCACCTGCTTTACCTTCTCGGTGTCCACTG
CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1769:6289..6642+

>mRNA_P-wetherbeei_contig1769.3.1 ID=mRNA_P-wetherbeei_contig1769.3.1|Name=mRNA_P-wetherbeei_contig1769.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig1769:6289..6642+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGTGGCGTTCACCTGGGCCATCGGCGGCTTCCGCGTGGTCAAGGAGGC
GGGCCCCTTCGGTGCGCAGCACGCCGAGTACCAGATCGTCGCCAGCTTTG
GTGAGCAGGTCTGGGCTGTCTGGGTGCGCTTTTCGGCCTTCGGGCGCTTC
GTGGACGTGGTGAAGCACCACTCACACTACAAGAAGACGCTCAAGGCGTG
GGCCCGCGTCAAGCGCGAGCAAAGGATGTGGCGGTGCCTCGACGTGTCAT
ACCTGAAGGTCAAGTGCCTGCTGCTCGAAGACTTCCTGCGGTTGGCGCTC
TTCGACGCCGGCAGCCCCGCCCACCTGCTTTACCTTCTCGGTGTCCACTG
CTGA
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