mRNA_P-wetherbeei_contig1768.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1768.4.1
Unique NamemRNA_P-wetherbeei_contig1768.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1768.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1768contigP-wetherbeei_contig1768:5391..6457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1067
Hectar predicted targeting categoryother localisation
Exons1
Cds size981
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186123.0755315-CDS-P-wetherbeei_contig1768:5390..63711683186123.0755315-CDS-P-wetherbeei_contig1768:5390..6371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1768 5391..6371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186123.083978-UTR-P-wetherbeei_contig1768:6371..64571683186123.083978-UTR-P-wetherbeei_contig1768:6371..6457Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1768 6372..6457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1768.4.1prot_P-wetherbeei_contig1768.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1768 5391..6371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1768.4.1

>prot_P-wetherbeei_contig1768.4.1 ID=prot_P-wetherbeei_contig1768.4.1|Name=mRNA_P-wetherbeei_contig1768.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
GGGGGGRTVPFPHCEEFSIEKLVRAASARQRSAVLAGDRQTRQRRHRPES
FPLSDGDELSPTHHRLNLAAVDGGGRTVLIGEGGGCRRSRRDGNEDDGGR
GGNDGGSSGGCGRRRGGGGGGGGSGGGSAGGGGATAGSNGGADGGGRGGL
TSGGTTSGCGLADAPRKYQKARHFQRGEGGQACLYGAEADAAPAALDAFR
GGVGAIGGAESAASVPSERLRVPDGESTTMSVNGTWLLQAMERDSRNPYS
TRSRVLRSNSGSCGGGGGESSSVGSSPLRRCRDGSGGNGSESSSGNCKSP
LRHCVFWRGGSGVECAREGEKPSPLD*
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mRNA from alignment at P-wetherbeei_contig1768:5391..6457+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1768.4.1 ID=mRNA_P-wetherbeei_contig1768.4.1|Name=mRNA_P-wetherbeei_contig1768.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1067bp|location=Sequence derived from alignment at P-wetherbeei_contig1768:5391..6457+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGGCGGAGGGCGCACGGTTCCCTTTCCGCACTGCGAAGAGTT
CAGTATCGAAAAGCTGGTGCGTGCTGCAAGCGCCCGCCAGCGTTCGGCCG
TTTTGGCGGGGGATCGCCAAACGCGGCAGCGTCGTCATAGGCCTGAGAGC
TTTCCCCTCAGCGACGGCGACGAGCTCTCCCCCACCCACCACCGGCTCAA
TTTGGCGGCTGTGGACGGAGGCGGAAGAACTGTTCTGATCGGCGAAGGCG
GTGGCTGCCGGCGCAGTCGCCGCGATGGCAACGAGGACGACGGCGGCCGT
GGCGGCAATGACGGTGGCAGCTCCGGCGGTTGTGGCAGACGCCGCGGCGG
CGGTGGTGGCGGTGGTGGGAGTGGGGGCGGCAGCGCCGGTGGTGGGGGCG
CCACCGCCGGCAGCAACGGCGGCGCTGACGGTGGCGGTCGCGGCGGCCTC
ACCAGCGGCGGCACTACCAGCGGGTGCGGTCTAGCCGACGCACCTAGAAA
GTACCAGAAGGCAAGACATTTTCAACGTGGTGAAGGTGGTCAAGCTTGCC
TGTACGGCGCCGAGGCCGATGCCGCCCCCGCAGCGTTGGACGCTTTCAGG
GGCGGCGTTGGTGCCATCGGAGGCGCTGAATCCGCTGCTTCCGTTCCTTC
CGAGCGGCTGAGGGTGCCGGACGGGGAGAGCACTACTATGAGCGTGAATG
GGACGTGGCTGCTGCAGGCAATGGAGAGAGATTCGCGGAACCCATACAGC
ACGAGAAGCCGCGTTCTCCGCAGCAATTCTGGGAGCTGTGGTGGCGGTGG
CGGTGAGAGCAGCAGCGTCGGCAGCAGCCCGCTGCGCCGCTGCCGTGATG
GCAGTGGGGGTAACGGCAGTGAAAGTAGCAGCGGAAACTGCAAAAGCCCG
CTGCGCCACTGCGTCTTCTGGAGGGGTGGCAGTGGTGTTGAGTGCGCGCG
GGAAGGGGAGAAGCCCTCTCCGTTGGATTGATCACAGCATCGCGCACTAA
GGATGACACCCCGGTTCGTAGACGAACTTTCGTTCTCTAGGATAGAAACA
CTCTTAATAAAAGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1768:5391..6457+

>mRNA_P-wetherbeei_contig1768.4.1 ID=mRNA_P-wetherbeei_contig1768.4.1|Name=mRNA_P-wetherbeei_contig1768.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig1768:5391..6457+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGGCGGAGGGCGCACGGTTCCCTTTCCGCACTGCGAAGAGTT
CAGTATCGAAAAGCTGGTGCGTGCTGCAAGCGCCCGCCAGCGTTCGGCCG
TTTTGGCGGGGGATCGCCAAACGCGGCAGCGTCGTCATAGGCCTGAGAGC
TTTCCCCTCAGCGACGGCGACGAGCTCTCCCCCACCCACCACCGGCTCAA
TTTGGCGGCTGTGGACGGAGGCGGAAGAACTGTTCTGATCGGCGAAGGCG
GTGGCTGCCGGCGCAGTCGCCGCGATGGCAACGAGGACGACGGCGGCCGT
GGCGGCAATGACGGTGGCAGCTCCGGCGGTTGTGGCAGACGCCGCGGCGG
CGGTGGTGGCGGTGGTGGGAGTGGGGGCGGCAGCGCCGGTGGTGGGGGCG
CCACCGCCGGCAGCAACGGCGGCGCTGACGGTGGCGGTCGCGGCGGCCTC
ACCAGCGGCGGCACTACCAGCGGGTGCGGTCTAGCCGACGCACCTAGAAA
GTACCAGAAGGCAAGACATTTTCAACGTGGTGAAGGTGGTCAAGCTTGCC
TGTACGGCGCCGAGGCCGATGCCGCCCCCGCAGCGTTGGACGCTTTCAGG
GGCGGCGTTGGTGCCATCGGAGGCGCTGAATCCGCTGCTTCCGTTCCTTC
CGAGCGGCTGAGGGTGCCGGACGGGGAGAGCACTACTATGAGCGTGAATG
GGACGTGGCTGCTGCAGGCAATGGAGAGAGATTCGCGGAACCCATACAGC
ACGAGAAGCCGCGTTCTCCGCAGCAATTCTGGGAGCTGTGGTGGCGGTGG
CGGTGAGAGCAGCAGCGTCGGCAGCAGCCCGCTGCGCCGCTGCCGTGATG
GCAGTGGGGGTAACGGCAGTGAAAGTAGCAGCGGAAACTGCAAAAGCCCG
CTGCGCCACTGCGTCTTCTGGAGGGGTGGCAGTGGTGTTGAGTGCGCGCG
GGAAGGGGAGAAGCCCTCTCCGTTGGATTGA
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