mRNA_P-wetherbeei_contig17674.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17674.2.1
Unique NamemRNA_P-wetherbeei_contig17674.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: A0A2S2PQL9_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PQL9_SCHGA)

HSP 1 Score: 149 bits (375), Expect = 9.760e-43
Identity = 73/103 (70.87%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    7 LARHMKSLTHYTKGTPSPRSGAPTACRLPISGSVSLPLSGCFSPFPHGTCSLSVAEEYLGLEGGPPMFRQDFTCPALLESFAV*----RLRGYHPLWPTFPDR 303
            LA   KSLTHYTKGTPSP  GAPTACR P+S +VSLP SGCFSPFPHGT SLSV++EYL  EGGPP+FRQDFTCPALL    V     R++GYH LWP FP R
Sbjct:    3 LATECKSLTHYTKGTPSPLKGAPTACRRPVSETVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLVVPLVPQRGFRIQGYHLLWPGFPSR 105          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: A0A6G5ADV0_RHIMP (Uncharacterized protein (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5ADV0_RHIMP)

HSP 1 Score: 139 bits (350), Expect = 6.530e-40
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 3
Query:   87 ASDFRICFTPLVGVLFTFPSRYLFTIGRRGVLRLGGWSPHVQTGFHVSRPTRVLRCLTSTGLSPAMAD 290
            ASDFRICFTPLVGVLFTFPSRYLFTIGRRGVLRLGGWSPHVQTGFHVSRPTRV  CLTSTGLSPAMAD
Sbjct:    1 ASDFRICFTPLVGVLFTFPSRYLFTIGRRGVLRLGGWSPHVQTGFHVSRPTRVSCCLTSTGLSPAMAD 68          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: A0A0V0GKN2_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GKN2_SOLCH)

HSP 1 Score: 135 bits (341), Expect = 1.890e-38
Identity = 81/136 (59.56%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    7 LARHMKSLTHYTKGTPSPRSGAPT--ACRLPISGSVSLPLSGCFSPFPHGTCSLSVAEEYLGLEGGPPMFRQDFTCPALLESFAV*----RLRGYHPLWPTFPDRS-TLFHEGTGLVPVRSPLLRESRLMSFPPGT 393
            LA   KSLTHYTKGT SP +G+    AC   I      PL G FSPFPHGT SLSV  EYL LE GPP+FRQDFTCPALL + +V     R+RGYHPLWP FP RS +   +   LVP RSPLL ESRL+S P  T
Sbjct:    3 LATEXKSLTHYTKGTQSPLAGSYFLYACGFRI---YFTPLPGFFSPFPHGTGSLSVDHEYLALEDGPPIFRQDFTCPALLVARSVPPPRFRIRGYHPLWPDFPFRSASKAAKSCRLVPFRSPLLWESRLISVPRAT 135          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: Q3BKI1_9PROT (Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI1_9PROT)

HSP 1 Score: 138 bits (348), Expect = 5.480e-38
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 LKLARHMKSLTHYTKGTPSPRSGAPTACRLPISGSVSLPLSGCFSPFPHGTCSLSVAEEYLGLEGGPPMFRQDFTCPALLES 246
            LKLA +  SLTHYTKGTPSP   APTACR  +SG+VSLPLSGCFSPFPHGT SLSV EEYLGLE GPPMFRQDFTCPALL++
Sbjct:   61 LKLAAYTNSLTHYTKGTPSPFKRAPTACRHSVSGTVSLPLSGCFSPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKA 142          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: E0XW25_9PROT (Uncharacterized protein n=1 Tax=uncultured Rhodospirillales bacterium HF4000_24M03 TaxID=710788 RepID=E0XW25_9PROT)

HSP 1 Score: 131 bits (329), Expect = 3.130e-37
Identity = 67/90 (74.44%), Postives = 72/90 (80.00%), Query Frame = 3
Query:  126 VLFTFPSRYLFTIGRRGVLRLGGWSPHVQTGFHVSRPTRVLRCL-TSTGLSPAMADLSRSFDFISRRHWPGPGSLATTTGVSVDVLSSRY 392
            +LFTFPSRY +TIGR+GVLRLGGWSPHVQTGFHVSRPTRV +   T TGLSP+MA LSR F  I    WPGP SLA T GVSVDVLSS Y
Sbjct:    1 MLFTFPSRYWYTIGRQGVLRLGGWSPHVQTGFHVSRPTRVQQTTDTHTGLSPSMAGLSRPFWLIVCWRWPGPRSLAATDGVSVDVLSSSY 90          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: UPI001A08AA19 (Uncharacterized protein n=1 Tax=Pseudorhizobium halotolerans TaxID=1233081 RepID=UPI001A08AA19)

HSP 1 Score: 135 bits (339), Expect = 7.950e-37
Identity = 74/113 (65.49%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 LKLARHMKSLTHYTKGTPSPRSGAPTACRLPISGSVSLPLSGCFSPFPHGTCSLSVAEEYLGLEGGPPMFRQDFTCPALLESFAV*RLRGYHPLWPTFPDRSTLFHEGTGLVP 339
            LKLA + KSLTHYTKGTPSP   APT CR P+SGS+SLP SGCFSPFPHGTCSLSV  EYLGLE G PMFRQDFTCPALL+        G   L PT    S LF    G +P
Sbjct:   46 LKLACYTKSLTHYTKGTPSPLR-APTVCRHPVSGSISLPSSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNQCSTPTG---LSPTIAKLSNLF----GFIP 150          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: A0A6A5L4G5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L4G5_LUPAL)

HSP 1 Score: 141 bits (356), Expect = 1.780e-36
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 LKLARHMKSLTHYTKGTPSPRSGAPTACRLPISGSVSLPLSGCFSPFPHGTCSLSVAEEYLGLEGGPPMFRQDFTCPALL 240
            LKLA + KSLTHYTKGTPSP   APTACR P+SG+VSLPLSGCFSPFPHGT +LSV EEYLGLEGGPPMFRQ FTCPALL
Sbjct:   19 LKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALL 98          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: A0A6A5L866_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L866_LUPAL)

HSP 1 Score: 141 bits (356), Expect = 2.620e-36
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 LKLARHMKSLTHYTKGTPSPRSGAPTACRLPISGSVSLPLSGCFSPFPHGTCSLSVAEEYLGLEGGPPMFRQDFTCPALL 240
            LKLA + KSLTHYTKGTPSP   APTACR P+SG+VSLPLSGCFSPFPHGT +LSV EEYLGLEGGPPMFRQ FTCPALL
Sbjct:   19 LKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALL 98          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: A0A6A5L6S4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6S4_LUPAL)

HSP 1 Score: 141 bits (356), Expect = 2.650e-36
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 LKLARHMKSLTHYTKGTPSPRSGAPTACRLPISGSVSLPLSGCFSPFPHGTCSLSVAEEYLGLEGGPPMFRQDFTCPALL 240
            LKLA + KSLTHYTKGTPSP   APTACR P+SG+VSLPLSGCFSPFPHGT +LSV EEYLGLEGGPPMFRQ FTCPALL
Sbjct:   19 LKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALL 98          
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Match: C9YEF0_CURXX (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=C9YEF0_CURXX)

HSP 1 Score: 126 bits (316), Expect = 3.080e-34
Identity = 68/107 (63.55%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  115 PLSGCFSPFPHGTCSLSVAEEYLGLEGGPPMFRQDFTCPALLESFAV*R----LRGYHPLWPTFPDRSTLFHEGT-GLVPVRSPLLRESRLMSFPPGTEMFQFPGFA 420
            PL G FSPFPHGT SLSV +EYL LE GPP+FRQDF+CPALL + +V      +RGYHPLWP FP  S +    T  L+  RSPLL ESRLMSFP  TEMFQF  FA
Sbjct:    5 PLPGFFSPFPHGTSSLSVNDEYLALEDGPPIFRQDFSCPALLFASSVPHRSFHVRGYHPLWPAFPGCSVMSCAITCRLLRFRSPLLSESRLMSFPRATEMFQFTRFA 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17674.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2S2PQL9_SCHGA9.760e-4370.87Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
A0A6G5ADV0_RHIMP6.530e-4097.06Uncharacterized protein (Fragment) n=1 Tax=Rhipice... [more]
A0A0V0GKN2_SOLCH1.890e-3859.56Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
Q3BKI1_9PROT5.480e-3880.49Uncharacterized protein n=2 Tax=Magnetospirillum g... [more]
E0XW25_9PROT3.130e-3774.44Uncharacterized protein n=1 Tax=uncultured Rhodosp... [more]
UPI001A08AA197.950e-3765.49Uncharacterized protein n=1 Tax=Pseudorhizobium ha... [more]
A0A6A5L4G5_LUPAL1.780e-3683.75Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L866_LUPAL2.620e-3683.75Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6S4_LUPAL2.650e-3683.75Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
C9YEF0_CURXX3.080e-3463.55Uncharacterized protein n=2 Tax=cellular organisms... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17674contigP-wetherbeei_contig17674:475..894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1430440.MGMSRv2_1983
Model size420
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.04e-37
EggNOG OGs2DNPH@1|root,32YF1@2|Bacteria,1NARM@1224|Proteobacteria,2UJNP@28211|Alphaproteobacteria
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.916443-UTR-P-wetherbeei_contig17674:474..4921683186122.916443-UTR-P-wetherbeei_contig17674:474..492Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17674 475..492 +
1683186122.9348836-UTR-P-wetherbeei_contig17674:732..8941683186122.9348836-UTR-P-wetherbeei_contig17674:732..894Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17674 733..894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.9265575-CDS-P-wetherbeei_contig17674:492..7321683186122.9265575-CDS-P-wetherbeei_contig17674:492..732Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17674 493..732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17674.2.1prot_P-wetherbeei_contig17674.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17674 493..732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17674.2.1

>prot_P-wetherbeei_contig17674.2.1 ID=prot_P-wetherbeei_contig17674.2.1|Name=mRNA_P-wetherbeei_contig17674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MKSLTHYTKGTPSPRSGAPTACRLPISGSVSLPLSGCFSPFPHGTCSLSV
AEEYLGLEGGPPMFRQDFTCPALLESFAV*
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mRNA from alignment at P-wetherbeei_contig17674:475..894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17674.2.1 ID=mRNA_P-wetherbeei_contig17674.2.1|Name=mRNA_P-wetherbeei_contig17674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig17674:475..894+ (Phaeothamnion wetherbeei SAG_119_79)
CTTAAGCTTGCTCGGCACATGAAGTCGCTGACCCATTATACAAAAGGTAC GCCGTCACCCCGCTCGGGGGCTCCGACTGCTTGTAGGCTTCCGATTTCAG GATCTGTTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTCACGGT ACTTGTTCACTATCGGTCGCAGAGGAGTACTTAGGCTTGGAGGGTGGTCC CCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCGAGTCCTTCG CTGTTTGACGTCTACGGGGCTATCACCCGCTATGGCCGACCTTTCCAGAT CGTTCGACTTTATTTCACGAAGGCACTGGCCTGGTCCCGGTTCGCTCGCC ACTACTACGGGAGTCTCGGTTGATGTCCTTTCCTCCAGGTACTGAGATGT TTCAGTTCCCTGGGTTTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17674:475..894+

>mRNA_P-wetherbeei_contig17674.2.1 ID=mRNA_P-wetherbeei_contig17674.2.1|Name=mRNA_P-wetherbeei_contig17674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig17674:475..894+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCGCTCGGG
GGCTCCGACTGCTTGTAGGCTTCCGATTTCAGGATCTGTTTCACTCCCCT
TGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTC
GCAGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGA
TTTCACGTGTCCCGCCCTACTCGAGTCCTTCGCTGTTTGA
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