mRNA_P-wetherbeei_contig1767.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1767.2.1
Unique NamemRNA_P-wetherbeei_contig1767.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1767.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1767contigP-wetherbeei_contig1767:2143..4278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2136
Hectar predicted targeting categoryother localisation
Exons1
Cds size1806
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.7145128-UTR-P-wetherbeei_contig1767:2142..21911683186122.7145128-UTR-P-wetherbeei_contig1767:2142..2191Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1767 2143..2191 +
1683186122.736378-UTR-P-wetherbeei_contig1767:3997..42781683186122.736378-UTR-P-wetherbeei_contig1767:3997..4278Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1767 3998..4278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.7261205-CDS-P-wetherbeei_contig1767:2191..39971683186122.7261205-CDS-P-wetherbeei_contig1767:2191..3997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1767 2192..3997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1767.2.1prot_P-wetherbeei_contig1767.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1767 2192..3997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1767.2.1

>prot_P-wetherbeei_contig1767.2.1 ID=prot_P-wetherbeei_contig1767.2.1|Name=mRNA_P-wetherbeei_contig1767.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=602bp
MDRLRRATSGGGGGAAPPTPPSQPGRQGGFGGFGGFGGDSDSGGDVIFVL
LGGRLEIFDLMSGVPLAIVQTSDLTDGLSDPLFVRCVDASGLPIGSVLRE
DGHIRWAHLSPLASDGGGSNGNGGSRRGSTTSNSTPSSEDDHVEPHLLVV
LGSSLALVALEASGTGLAGMATAAASAVSAVTTTLAAPLKHGRSSSNDGV
VLSSQPLLHAGLRICAAARLPPADDGGALPAGAAGAGICWTAFWLEEEGD
DTADDDDENGSKIGGKGGGGKGGGGGDDGGVEKRATLMVLDGASNLTAFL
LPSLTIVHSRHLPDAAAAAAAAVATTAAGAGSADTAVMTAAAAAPPLLPL
AVNALGELTLRTGPRELARFSILGQACYERLLDGRQRLVKVAEAVAANRR
SHRARVEPEAGQLLTSAAAAAATAAATAATAARSPGTPSGRSKWSSMLRN
KWRGSGSSKSIDGGGGDGGGGGGASSYDSGGGRGRAAAARIFDACGDLSE
TRRREELFAGRRPWVQTSPDGAVGSTGTCSGNRGGLARAHGGVDDTKAAV
SEAQKLALENVEKLGKLENRTAQLEDNAANFVDMARELRRRQEAQPECIV
S*
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mRNA from alignment at P-wetherbeei_contig1767:2143..4278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1767.2.1 ID=mRNA_P-wetherbeei_contig1767.2.1|Name=mRNA_P-wetherbeei_contig1767.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2136bp|location=Sequence derived from alignment at P-wetherbeei_contig1767:2143..4278+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGGGCCGACGGCGGATCCTGCGCTGCCGCCGGTGCCGTCCGCAA
TGGACCGGTTGCGGCGCGCCACCTCTGGCGGCGGTGGGGGAGCGGCACCG
CCGACGCCGCCGTCGCAGCCGGGGCGGCAGGGCGGTTTCGGCGGCTTCGG
CGGCTTCGGCGGCGATAGCGACAGCGGTGGCGACGTTATTTTCGTGCTGC
TCGGCGGGCGCCTCGAAATATTTGACCTGATGAGCGGCGTTCCTTTGGCC
ATCGTACAGACATCTGACCTCACCGACGGCCTTTCGGACCCGCTGTTCGT
CCGGTGCGTCGACGCCTCCGGCCTGCCGATCGGCAGCGTGCTGAGGGAGG
ACGGCCACATTCGATGGGCGCATTTGTCGCCGCTTGCCTCTGATGGCGGC
GGCAGCAATGGCAACGGCGGCAGCCGCCGTGGCAGTACAACCAGTAACAG
CACGCCCAGCAGCGAGGACGATCATGTGGAGCCGCACCTGCTCGTGGTCC
TGGGAAGCAGCCTCGCGCTGGTGGCGCTGGAGGCGTCCGGCACGGGGCTC
GCAGGCATGGCGACGGCTGCGGCATCGGCGGTTTCGGCGGTCACGACCAC
CCTCGCGGCACCCCTCAAGCACGGCCGCAGCAGCAGCAATGACGGCGTGG
TGCTGTCATCGCAGCCGTTGCTGCACGCCGGGCTGCGGATCTGCGCGGCA
GCGCGCCTCCCGCCGGCCGATGATGGCGGCGCGCTGCCGGCCGGCGCCGC
GGGCGCCGGCATCTGCTGGACGGCGTTCTGGCTGGAAGAAGAGGGTGATG
ACACTGCGGACGACGACGATGAAAATGGCAGCAAGATCGGCGGCAAGGGC
GGCGGCGGCAAAGGCGGCGGCGGAGGAGATGACGGCGGCGTCGAAAAGCG
AGCGACCCTGATGGTGCTCGATGGGGCGAGCAACCTGACTGCGTTCTTGC
TGCCATCCCTCACGATAGTGCACTCCCGACACCTTCCTGACGCCGCAGCT
GCCGCAGCCGCCGCCGTGGCAACGACAGCGGCAGGGGCGGGGTCGGCAGA
CACGGCGGTGATGACAGCGGCGGCGGCGGCGCCGCCGCTGCTGCCGCTGG
CAGTCAACGCCCTGGGTGAGCTGACACTTCGGACAGGCCCGCGGGAGTTG
GCGCGCTTCTCGATCCTGGGACAGGCCTGCTACGAGCGCCTGCTGGACGG
GCGCCAGCGGCTGGTCAAAGTGGCTGAAGCCGTGGCAGCCAATCGGAGGA
GCCACCGCGCCCGTGTGGAGCCCGAAGCGGGACAGCTGCTGACTTCGGCA
GCAGCGGCAGCGGCGACGGCAGCAGCGACGGCGGCGACGGCCGCGCGTTC
ACCGGGGACGCCGTCGGGGCGCAGCAAGTGGTCGTCCATGCTGCGAAACA
AGTGGCGGGGCAGCGGTAGCAGCAAGAGCATCGACGGCGGCGGTGGTGAT
GGCGGCGGTGGCGGTGGCGCCAGCTCGTACGATAGCGGCGGCGGAAGGGG
CCGCGCCGCTGCCGCACGCATTTTTGACGCCTGTGGCGACCTCTCCGAAA
CGCGTCGCCGCGAGGAGCTCTTTGCCGGCAGGCGCCCATGGGTGCAAACC
TCCCCGGATGGAGCCGTCGGGTCAACTGGCACTTGCAGCGGCAATCGTGG
CGGCCTGGCGCGCGCACACGGCGGCGTGGATGACACCAAGGCGGCGGTGT
CTGAGGCGCAGAAGCTGGCGCTGGAGAACGTAGAGAAGCTGGGAAAGCTG
GAGAACCGGACGGCCCAGCTGGAGGACAACGCCGCCAACTTTGTCGACAT
GGCGCGGGAGCTGAGGCGGCGGCAGGAAGCCCAGCCGGAATGCATTGTGT
CGTGAGCGGGAGTGCTGATGGTGGATACTGATGATGAAGCGGCGATGGCA
ACGGGCAACGGTGGGGATTCGCGCCAGTTTGAAGAGAGGGCAAAAATAGC
TTTGCCTGAGAGAACAGGCGGGAGTTGGCAAGCGAATCGTGTAACGCGAG
GCTGGACTGAAGGAAGAGACGAAGTGCGCCTTGAAGAATGGCTGCAATAG
TAGATTATCCCGATTTAAATGTCGTCCATTCCTTGCAATCTACTTTGTAG
TGGTAGCCTAGACGCAAATCTATGAAGGAACCTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1767:2143..4278+

>mRNA_P-wetherbeei_contig1767.2.1 ID=mRNA_P-wetherbeei_contig1767.2.1|Name=mRNA_P-wetherbeei_contig1767.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1806bp|location=Sequence derived from alignment at P-wetherbeei_contig1767:2143..4278+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGGTTGCGGCGCGCCACCTCTGGCGGCGGTGGGGGAGCGGCACC
GCCGACGCCGCCGTCGCAGCCGGGGCGGCAGGGCGGTTTCGGCGGCTTCG
GCGGCTTCGGCGGCGATAGCGACAGCGGTGGCGACGTTATTTTCGTGCTG
CTCGGCGGGCGCCTCGAAATATTTGACCTGATGAGCGGCGTTCCTTTGGC
CATCGTACAGACATCTGACCTCACCGACGGCCTTTCGGACCCGCTGTTCG
TCCGGTGCGTCGACGCCTCCGGCCTGCCGATCGGCAGCGTGCTGAGGGAG
GACGGCCACATTCGATGGGCGCATTTGTCGCCGCTTGCCTCTGATGGCGG
CGGCAGCAATGGCAACGGCGGCAGCCGCCGTGGCAGTACAACCAGTAACA
GCACGCCCAGCAGCGAGGACGATCATGTGGAGCCGCACCTGCTCGTGGTC
CTGGGAAGCAGCCTCGCGCTGGTGGCGCTGGAGGCGTCCGGCACGGGGCT
CGCAGGCATGGCGACGGCTGCGGCATCGGCGGTTTCGGCGGTCACGACCA
CCCTCGCGGCACCCCTCAAGCACGGCCGCAGCAGCAGCAATGACGGCGTG
GTGCTGTCATCGCAGCCGTTGCTGCACGCCGGGCTGCGGATCTGCGCGGC
AGCGCGCCTCCCGCCGGCCGATGATGGCGGCGCGCTGCCGGCCGGCGCCG
CGGGCGCCGGCATCTGCTGGACGGCGTTCTGGCTGGAAGAAGAGGGTGAT
GACACTGCGGACGACGACGATGAAAATGGCAGCAAGATCGGCGGCAAGGG
CGGCGGCGGCAAAGGCGGCGGCGGAGGAGATGACGGCGGCGTCGAAAAGC
GAGCGACCCTGATGGTGCTCGATGGGGCGAGCAACCTGACTGCGTTCTTG
CTGCCATCCCTCACGATAGTGCACTCCCGACACCTTCCTGACGCCGCAGC
TGCCGCAGCCGCCGCCGTGGCAACGACAGCGGCAGGGGCGGGGTCGGCAG
ACACGGCGGTGATGACAGCGGCGGCGGCGGCGCCGCCGCTGCTGCCGCTG
GCAGTCAACGCCCTGGGTGAGCTGACACTTCGGACAGGCCCGCGGGAGTT
GGCGCGCTTCTCGATCCTGGGACAGGCCTGCTACGAGCGCCTGCTGGACG
GGCGCCAGCGGCTGGTCAAAGTGGCTGAAGCCGTGGCAGCCAATCGGAGG
AGCCACCGCGCCCGTGTGGAGCCCGAAGCGGGACAGCTGCTGACTTCGGC
AGCAGCGGCAGCGGCGACGGCAGCAGCGACGGCGGCGACGGCCGCGCGTT
CACCGGGGACGCCGTCGGGGCGCAGCAAGTGGTCGTCCATGCTGCGAAAC
AAGTGGCGGGGCAGCGGTAGCAGCAAGAGCATCGACGGCGGCGGTGGTGA
TGGCGGCGGTGGCGGTGGCGCCAGCTCGTACGATAGCGGCGGCGGAAGGG
GCCGCGCCGCTGCCGCACGCATTTTTGACGCCTGTGGCGACCTCTCCGAA
ACGCGTCGCCGCGAGGAGCTCTTTGCCGGCAGGCGCCCATGGGTGCAAAC
CTCCCCGGATGGAGCCGTCGGGTCAACTGGCACTTGCAGCGGCAATCGTG
GCGGCCTGGCGCGCGCACACGGCGGCGTGGATGACACCAAGGCGGCGGTG
TCTGAGGCGCAGAAGCTGGCGCTGGAGAACGTAGAGAAGCTGGGAAAGCT
GGAGAACCGGACGGCCCAGCTGGAGGACAACGCCGCCAACTTTGTCGACA
TGGCGCGGGAGCTGAGGCGGCGGCAGGAAGCCCAGCCGGAATGCATTGTG
TCGTGA
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