mRNA_P-wetherbeei_contig17659.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17659.2.1
Unique NamemRNA_P-wetherbeei_contig17659.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17659.2.1 vs. uniprot
Match: A0A7Z9PYP3_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PYP3_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 1.790e-17
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 MAELGKIQAQKKIACPSCRKILPDWSAEEILSGETLKCPSCLQPVQLPAEVYERAKKTRYLGVNLDIT 204
            M  +G+I+   K+ACPSCR  L D+S EE  SGE  +CP C Q V+LP E+  RA ++RYLG +LDIT
Sbjct:    1 MGNVGRIKPLTKMACPSCRNFLEDFSVEEAASGEPQQCPHCGQKVKLPDELVRRAVESRYLGGSLDIT 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17659.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Z9PYP3_9BACT1.790e-1752.94Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17659contigP-wetherbeei_contig17659:556..765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.4225605-CDS-P-wetherbeei_contig17659:555..7651683186122.4225605-CDS-P-wetherbeei_contig17659:555..765Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17659 556..765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17659.2.1prot_P-wetherbeei_contig17659.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17659 556..765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17659.2.1

>prot_P-wetherbeei_contig17659.2.1 ID=prot_P-wetherbeei_contig17659.2.1|Name=mRNA_P-wetherbeei_contig17659.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MAELGKIQAQKKIACPSCRKILPDWSAEEILSGETLKCPSCLQPVQLPAE
VYERAKKTRYLGVNLDITG*
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mRNA from alignment at P-wetherbeei_contig17659:556..765-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17659.2.1 ID=mRNA_P-wetherbeei_contig17659.2.1|Name=mRNA_P-wetherbeei_contig17659.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig17659:556..765- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAATTAGGAAAAATCCAGGCCCAGAAAAAAATCGCCTGCCCCTC
GTGCCGCAAGATTTTGCCCGACTGGAGCGCCGAGGAAATCCTCAGCGGCG
AGACCTTGAAATGCCCGAGTTGCCTGCAACCCGTGCAACTACCCGCCGAA
GTCTACGAGCGAGCCAAGAAGACGCGCTACCTCGGAGTCAATCTCGACAT
CACCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17659:556..765-

>mRNA_P-wetherbeei_contig17659.2.1 ID=mRNA_P-wetherbeei_contig17659.2.1|Name=mRNA_P-wetherbeei_contig17659.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig17659:556..765- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAATTAGGAAAAATCCAGGCCCAGAAAAAAATCGCCTGCCCCTC
GTGCCGCAAGATTTTGCCCGACTGGAGCGCCGAGGAAATCCTCAGCGGCG
AGACCTTGAAATGCCCGAGTTGCCTGCAACCCGTGCAACTACCCGCCGAA
GTCTACGAGCGAGCCAAGAAGACGCGCTACCTCGGAGTCAATCTCGACAT
CACCGGCTGA
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