mRNA_P-wetherbeei_contig17636.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17636.1.1
Unique NamemRNA_P-wetherbeei_contig17636.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A3D2WYV1_9BACT (Response regulatory domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A3D2WYV1_9BACT)

HSP 1 Score: 146 bits (369), Expect = 1.360e-41
Identity = 72/141 (51.06%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    7 VRLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEVNSLMEKLEARSAELE 429
            +++LLVEDD+VD++AF+R  +    +YDY +A SV  A+  L++  F++V+TDY LGDG+AF FFD V  A +++ T  GDEEVAV AMK+GA DYLIKD +RNYLKVLPLTVA A++ ++I ++   + E+ E    EL+
Sbjct:    6 IKVLLVEDDKVDQVAFKRLVKNENLLYDYTIAGSVSEAKEILNSEIFNIVITDYNLGDGIAFNFFDFVTDAPIILVTGVGDEEVAVKAMKAGAYDYLIKDHQRNYLKVLPLTVANAIKHKKIEDDHKRMEEEREKLITELQ 146          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A1W9SIB2_9BACT (Uncharacterized protein n=1 Tax=candidate division KSB1 bacterium 4572_119 TaxID=1971636 RepID=A0A1W9SIB2_9BACT)

HSP 1 Score: 143 bits (360), Expect = 3.100e-40
Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    1 NAVRLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRR 369
            N +++LL+EDDRVD++AF+R   +SG  YDY V  S   A++ L+   FDVV+TDY LGDG AF+ F+ VA + +++TT +GDEE+AV AMK+GA DYLIKDP+RNYL VLP+TV  AL++++
Sbjct:    4 NYLKVLLIEDDRVDQLAFKRFVDQSGLKYDYEVVSSFREAKSILTEKKFDVVITDYFLGDGTAFDVFNHVADSTVIITTGTGDEEIAVRAMKTGAYDYLIKDPDRNYLTVLPVTVENALKQKK 126          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A661Q2F7_9DELT (Histidine kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661Q2F7_9DELT)

HSP 1 Score: 143 bits (361), Expect = 3.560e-37
Identity = 75/147 (51.02%), Postives = 103/147 (70.07%), Query Frame = 1
Query:    1 NAVRLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEVNSLMEKLEA----RSAELE 429
            +++RLLLVEDD+VD+MAFER  +     YDY +A SV +A   L +  FD++++DY LGDG +FE FD      +++TT SGDE VAV AMK GA DYLIKDPE NYL+ LP+TV  AL+R++   E+ +  E+LE+    R+AEL+
Sbjct:    4 SSIRLLLVEDDKVDQMAFERFVKRENLPYDYAIAGSVAAAEEVLKSTGFDIIISDYMLGDGTSFELFDLYKNVPVIITTGSGDEGVAVEAMKLGACDYLIKDPEGNYLQTLPITVELALKRKQNETELQNYHERLESMVEERTAELQ 150          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A3C0TPN7_9BACT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A3C0TPN7_9BACT)

HSP 1 Score: 134 bits (336), Expect = 1.510e-34
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    7 VRLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEV 384
            +++LL+EDD VDRMAF+R        +DY  A SV  AR  L + +FDVV++DY LGDG AF+  D    + +++TT +G+EE+AV AMKSGA DYLIKD +RNYLKVLPLTV  A+ ++R  + V
Sbjct:    4 IKILLIEDDMVDRMAFKRLVESGKLPFDYAEAGSVSEARKILDSASFDVVISDYLLGDGTAFDILDLQLDSPVIITTGAGNEEIAVRAMKSGAYDYLIKDADRNYLKVLPLTVDKAIRQKRTEDRV 129          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A660VZY3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A660VZY3_9BACT)

HSP 1 Score: 134 bits (338), Expect = 2.060e-34
Identity = 68/136 (50.00%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 NAVRLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEVNSLMEKLE 408
            +A ++LLVEDD++D+MAFER  +     YDY VA SV  AR+ L +  FDVV+ DY LGDG AF+ F  V    ++VTT  GDEE+AV AMK+GA DYL KD ERNYLKVLP  +   +  ++  +E+    + LE
Sbjct:    6 SAYKILLVEDDKLDQMAFERLIKGENLPYDYTVAGSVSHARSILDSNVFDVVIVDYSLGDGTAFDVFKLVKDTPIIVTTGIGDEEIAVKAMKAGAYDYLTKDQERNYLKVLPEIIKNVISHKQTEDELKEYHDNLE 141          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A662RJ58_9EURY (Uncharacterized protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A662RJ58_9EURY)

HSP 1 Score: 132 bits (332), Expect = 8.180e-34
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   13 LLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEVNSLMEKLE 408
            ++LVEDDRVDRMAF+R+ +E+G ++DY VA+SV  A+  L++  FD V+ DYRLGDG  F+ F+    A ++V T +GDEE A  AM+ GA DYLIKDP+  YL VLP TV   ++R +   E+      +E
Sbjct:    6 IMLVEDDRVDRMAFDRSVKENGSLHDYTVANSVAEAKTILNSTGFDAVIADYRLGDGTVFDIFEMGVDAPIIVVTGAGDEETAARAMRVGAYDYLIKDPDNKYLTVLPTTVENVVKRWKSEKELRQYQSMVE 137          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A0S7XWB8_9COXI (Uncharacterized protein n=1 Tax=Coxiella sp. DG_40 TaxID=1703354 RepID=A0A0S7XWB8_9COXI)

HSP 1 Score: 128 bits (321), Expect = 9.100e-34
Identity = 61/128 (47.66%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   10 RLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEVNSL 393
            ++LL+EDD++D+MAFER   E    YD  +A SV  AR  LS+  FDVV+ DY LGDG AF+  D V    ++  T +GDEE+AV A K+GA DYLIKDPE+NYLK +P+ V  +++ ++   ++  L
Sbjct:   12 KILLIEDDKLDQMAFERLVEEENLPYDCTIAGSVSEARCTLSSDRFDVVIVDYVLGDGTAFDILDLVKNTPIIFVTGAGDEEIAVEAWKAGAYDYLIKDPEQNYLKAVPIKVENSIKHKKTEEKLQLL 139          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A0S6VVS9_9BACT (Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Candidatus Moduliflexus flocculans TaxID=1499966 RepID=A0A0S6VVS9_9BACT)

HSP 1 Score: 130 bits (327), Expect = 1.290e-33
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   10 RLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEVNSLMEKLE 408
            +++ VEDD+VD+MAFER AR   + Y+YV+A SVE  R  L     D  V DY LGDGVAF+ FD +A   +++ T  G+EE+AV AMK+GA DYLIKD E NYLK L LTV  A++R++   E+    E+LE
Sbjct:    7 KIVFVEDDKVDQMAFERFARREHFPYEYVIAGSVEQTRQLLRTTPVDAAVVDYVLGDGVAFDLFDDLAGIPIILVTGIGNEEIAVKAMKAGAYDYLIKDQEGNYLKTLALTVENAIQRKQNELELQKHRERLE 139          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: A0A7C3G8E6_9CHLR (Response regulator n=1 Tax=Thermoflexia bacterium TaxID=2420334 RepID=A0A7C3G8E6_9CHLR)

HSP 1 Score: 132 bits (332), Expect = 3.720e-33
Identity = 68/139 (48.92%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    7 VRLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEVNSLMEKLEARSAE 423
            +++LLVEDD+VD++AF+R  +     YDYV+A S+  AR  L+N  FD+ + DY LG G AF+ F       +VV T SGD+E AV AMK+GA DYLIKDP+ NYL VLP TV   L + R+  E+    E+LE   AE
Sbjct:    5 IKILLVEDDKVDQLAFQRFVKRENLPYDYVIAGSLSEARDCLTNERFDIALLDYMLGGGTAFDLFAVAGDTPIVVITGSGDQETAVRAMKAGAGDYLIKDPQGNYLTVLPATVERILRQWRVEEELQQYRERLEELVAE 143          
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Match: Q64C56_9ARCH (Sensory transduction histidine kinase n=1 Tax=uncultured archaeon GZfos26B2 TaxID=285406 RepID=Q64C56_9ARCH)

HSP 1 Score: 130 bits (327), Expect = 4.280e-33
Identity = 63/124 (50.81%), Postives = 84/124 (67.74%), Query Frame = 1
Query:   13 LLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFDVVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLIKDPERNYLKVLPLTVAGALERRRIRNEV 384
            ++LVEDDRVDRMAF R+ +E+G  YDY VA SV  A+  L++  FD V+ DY LGDG AF+ F+    A ++V T +GDE   V AM++GA DYL+KDP+ NYL VLP TV   + R +   E+
Sbjct:    6 IMLVEDDRVDRMAFNRSVKENGNPYDYTVASSVAEAKTILNSTRFDAVIADYMLGDGTAFDIFEMGVDAPIIVVTGAGDEGTVVKAMRAGAYDYLVKDPDNNYLTVLPTTVEHVVRRWKAEREI 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17636.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2WYV1_9BACT1.360e-4151.06Response regulatory domain-containing protein n=1 ... [more]
A0A1W9SIB2_9BACT3.100e-4055.28Uncharacterized protein n=1 Tax=candidate division... [more]
A0A661Q2F7_9DELT3.560e-3751.02Histidine kinase n=1 Tax=Deltaproteobacteria bacte... [more]
A0A3C0TPN7_9BACT1.510e-3452.38Sigma-54-dependent Fis family transcriptional regu... [more]
A0A660VZY3_9BACT2.060e-3450.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A662RJ58_9EURY8.180e-3448.48Uncharacterized protein n=1 Tax=Methanosarcinales ... [more]
A0A0S7XWB8_9COXI9.100e-3447.66Uncharacterized protein n=1 Tax=Coxiella sp. DG_40... [more]
A0A0S6VVS9_9BACT1.290e-3351.13Response regulator receiver sensor signal transduc... [more]
A0A7C3G8E6_9CHLR3.720e-3348.92Response regulator n=1 Tax=Thermoflexia bacterium ... [more]
Q64C56_9ARCH4.280e-3350.81Sensory transduction histidine kinase n=1 Tax=uncu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17636contigP-wetherbeei_contig17636:24..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog517418.Ctha_0019
PFAMsHATPase_c,HisKA,Response_reg
Model size429
Max annot lvl1090|Chlorobi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.31e-32
EggNOG OGsCOG0642@1|root,COG0784@1|root,COG2198@1|root,COG2204@1|root,COG0784@2|Bacteria,COG2198@2|Bacteria,COG2204@2|Bacteria,COG2205@2|Bacteria,1FDMS@1090|Chlorobi
Descriptionhistidine kinase A domain protein
Cds size429
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.8428726-CDS-P-wetherbeei_contig17636:23..4521683186121.8428726-CDS-P-wetherbeei_contig17636:23..452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17636 24..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17636.1.1prot_P-wetherbeei_contig17636.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17636 24..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17636.1.1

>prot_P-wetherbeei_contig17636.1.1 ID=prot_P-wetherbeei_contig17636.1.1|Name=mRNA_P-wetherbeei_contig17636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
NAVRLLLVEDDRVDRMAFERTARESGWVYDYVVADSVESARAHLSNGAFD
VVVTDYRLGDGVAFEFFDKVAPACLVVTTASGDEEVAVTAMKSGADDYLI
KDPERNYLKVLPLTVAGALERRRIRNEVNSLMEKLEARSAELE
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mRNA from alignment at P-wetherbeei_contig17636:24..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17636.1.1 ID=mRNA_P-wetherbeei_contig17636.1.1|Name=mRNA_P-wetherbeei_contig17636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig17636:24..452+ (Phaeothamnion wetherbeei SAG_119_79)
AACGCGGTCAGACTATTGCTGGTCGAGGATGACCGGGTCGACCGGATGGC GTTCGAGCGCACTGCGCGCGAGTCGGGTTGGGTCTATGACTACGTGGTTG CGGACTCTGTCGAATCCGCTCGGGCGCACCTGTCCAACGGCGCATTCGAC GTCGTCGTGACCGACTATCGCCTGGGCGACGGCGTGGCCTTCGAGTTCTT TGACAAGGTGGCGCCGGCCTGCCTGGTCGTCACCACCGCCAGCGGCGACG AGGAAGTTGCCGTGACCGCCATGAAATCAGGTGCGGATGACTACCTGATC AAGGACCCCGAACGCAACTACCTCAAGGTCCTGCCCCTGACCGTTGCAGG CGCACTCGAGCGCCGGCGCATTCGTAACGAAGTCAATTCGCTGATGGAAA AGCTTGAGGCCCGCAGCGCCGAACTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17636:24..452+

>mRNA_P-wetherbeei_contig17636.1.1 ID=mRNA_P-wetherbeei_contig17636.1.1|Name=mRNA_P-wetherbeei_contig17636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig17636:24..452+ (Phaeothamnion wetherbeei SAG_119_79)
AACGCGGTCAGACTATTGCTGGTCGAGGATGACCGGGTCGACCGGATGGC
GTTCGAGCGCACTGCGCGCGAGTCGGGTTGGGTCTATGACTACGTGGTTG
CGGACTCTGTCGAATCCGCTCGGGCGCACCTGTCCAACGGCGCATTCGAC
GTCGTCGTGACCGACTATCGCCTGGGCGACGGCGTGGCCTTCGAGTTCTT
TGACAAGGTGGCGCCGGCCTGCCTGGTCGTCACCACCGCCAGCGGCGACG
AGGAAGTTGCCGTGACCGCCATGAAATCAGGTGCGGATGACTACCTGATC
AAGGACCCCGAACGCAACTACCTCAAGGTCCTGCCCCTGACCGTTGCAGG
CGCACTCGAGCGCCGGCGCATTCGTAACGAAGTCAATTCGCTGATGGAAA
AGCTTGAGGCCCGCAGCGCCGAACTCGAG
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