mRNA_P-wetherbeei_contig17626.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17626.1.1
Unique NamemRNA_P-wetherbeei_contig17626.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A5C7KAY2_9RHOO (Cobalamin-binding protein n=1 Tax=Zoogloea sp. TaxID=49181 RepID=A0A5C7KAY2_9RHOO)

HSP 1 Score: 258 bits (660), Expect = 1.500e-82
Identity = 124/266 (46.62%), Postives = 179/266 (67.29%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGS--EAEDAGVGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKAR 792
            V DD G + RL +PA R+VSL+PH+TEL+++ GAG ++VG V+ SDYPEAA  +A++G    +D E++V  +P +VLAW SGNR   +++LR LG+PV + E R+++D+AR L  LG L GT+  AE  A+ F +R  AL+ RY+ R  VR  +EIW+RPL T+NG H+IS +I LCGG N+FA LP LA  +  E VLA  P  IV     EA    + +W++++ L+AV   ++F +  DQ+ R TPR+ + AE LC  L++AR
Sbjct:   26 VTDDQGQNIRLAQPARRIVSLAPHVTELLYAAGAGDKVVGVVQYSDYPEAAKKVARVGGYTSVDMEKVVALKPDLVLAWKSGNRDAHLDKLRGLGIPVFINEPRKIEDVARSLSQLGKLAGTEAVAEAAAKAFRERHAALQARYSTRPRVRTFYEIWNRPLMTINGEHLISDVIRLCGGENVFARLPVLAPTIDTEAVLAAAPEVIVASGMGEARPEWLDDWRQWTKLQAVSRGNLFFIPPDQIQRHTPRILDGAERLCGQLEEAR 291          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A7C1TZF4_9GAMM (Cobalamin-binding protein n=2 Tax=root TaxID=1 RepID=A0A7C1TZF4_9GAMM)

HSP 1 Score: 258 bits (660), Expect = 1.650e-82
Identity = 129/266 (48.50%), Postives = 176/266 (66.17%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGSEAEDAGVG--NWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKAR 792
            V DD G + RL  PA+R+VSL+PH+TEL+FS GAG R+VG V  SDYP AA  + ++G    +D ERI+  RP +V+AW SGN    IE+LR LGL V + E R L+ +A +L  LG L GTQ+ A+  A  F QR+  LR RYAGR PV V +++WHRPL T+NG  +IS++I LCGGRN+FADLP LA ++ +E VL  +P AI+ G       V   +W R++ L+AV+   + ++ AD + R T R+ + AE LC GLD+ R
Sbjct:   28 VTDDVGHELRLTGPAQRIVSLAPHVTELLFSAGAGGRIVGVVDYSDYPPAARALPRVGSYNAVDMERILALRPDLVIAWASGNPPALIEQLRSLGLTVFLSEPRSLEGVASNLERLGRLAGTQLTAQPAADGFRQRLADLRARYAGRTPVSVFYQVWHRPLTTINGKQLISKVIRLCGGRNVFADLPALAPKLDIEAVLMADPQAIIAGVSKPGDSVWQQDWLRWTQLRAVKNHHLISIPADFLQRHTLRILDGAEQLCEGLDEVR 293          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A2N5LCJ8_9RALS (Cobalamin-binding protein n=3 Tax=Ralstonia TaxID=48736 RepID=A0A2N5LCJ8_9RALS)

HSP 1 Score: 255 bits (652), Expect = 4.570e-81
Identity = 124/270 (45.93%), Postives = 171/270 (63.33%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGSEAEDAG------VGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKAR 792
            V DDTG    L+RPA+R+VSL+PH TEL+F+ G G+R+VGTV  SDYP AA  I ++GD   LD ERI   +P +V+ W  GN +  ++RLR LG+P+   E  R+ DI R +  LG L  T+  A   A+ F QR+D LRNRY+GR PV V +++W +PL T+NG HI S ++ LCGGRN+FA  P L   VS E V+A NP  ++  S     G      +  WKR+  L+AV+  ++FT++ D + R  PR+ EAA  LC  L++AR
Sbjct:   33 VTDDTGAAVTLQRPAQRIVSLAPHATELLFAAGGGARIVGTVTYSDYPPAARDIPRVGDNRSLDLERIAALKPDLVVVWRHGNAQKQLDRLRALGIPLFFSEPHRMADIPRSIEALGTLLDTRASAHDAAQQFRQRVDGLRNRYSGRPPVTVFYQVWEQPLMTLNGQHIFSDMLALCGGRNVFASEPLLVPTVSAEAVIAANPEVLLTASMGATQGNRPIDTLDGWKRWPQLQAVQRGNLFTINGDLINRFGPRLVEAATQLCEDLEEAR 302          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A848G4L5_9RHOO (Cobalamin-binding protein n=2 Tax=Zoogloea TaxID=349 RepID=A0A848G4L5_9RHOO)

HSP 1 Score: 254 bits (648), Expect = 8.900e-81
Identity = 120/268 (44.78%), Postives = 176/268 (65.67%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGS--EAEDAGVGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKARHQ 798
            + DD G    L +PA R+VSL+PH+TEL+++ GAG R+VG V+ SDYPEAA  +A++G    +D E++V  +P +V+AW SGNR   +++LR LG+PV + E R++ D+AR L   G L GT+  AE  A+ F +R  AL  RY+ R  VR  +EIW+RPL T+NG H+I+ ++ LCGG N+FA LP LA  + +E VLA  P AIV     EA    + +W++++ L AV   ++F +  DQ+ R TPR+ + AE LC  L++AR +
Sbjct:   23 LTDDQGKPVHLAQPARRIVSLAPHVTELLYAAGAGERVVGAVQYSDYPEAAKKVARVGSYTAVDMEKVVALKPDLVVAWKSGNRDAHLDKLRGLGIPVFINEPRKIDDVARSLSQFGRLAGTEAVAEPAAKAFRERYAALAARYSARPKVRTFYEIWNRPLMTINGEHLIADVMRLCGGENVFAKLPVLAPAIDVEAVLAAQPEAIVASGMGEARPEWLDDWRKWTKLPAVARGNLFFIPPDQIQRHTPRILDGAERLCGQLEEARER 290          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A369CM39_9GAMM (Iron complex transport system substrate-binding protein n=1 Tax=Thioalbus denitrificans TaxID=547122 RepID=A0A369CM39_9GAMM)

HSP 1 Score: 253 bits (647), Expect = 1.480e-80
Identity = 131/271 (48.34%), Postives = 169/271 (62.36%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGSEAEDAG--VGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKARHQANE 807
            VVDD+G    L  PA R+VSL+PH TEL+ + GAG R+VG V  SDYP AA  + Q+G    LD E I+   P +V+AW SGN   ++ERLR LG+PV V E RRL+DI   L  +G L GT  +A   A  F   ++ALR RYAGR PVRV ++IW  PL TV G H+I+ +I LCGGRNIFAD   LA  V +E VL ++P AIV    A +    +  W+R+  L AVR  ++F +  D + R TPR+ E AE LCA LD+ R +  E
Sbjct:   26 VVDDSGARVALPEPARRIVSLAPHATELLLAAGAGGRVVGVVSHSDYPAAARALPQVGGYERLDLEAILGLAPDLVVAWESGNPGAEVERLRALGIPVYVTELRRLEDIPATLERIGILAGTPGEAGTAAAAFRDGVEALRRRYAGRSPVRVFYQIWDSPLMTVGGDHLITSVIALCGGRNIFADQAALAPAVDVESVLVRDPEAIVASGMAAERPEWLDGWRRWPGLGAVREEALFLIHPDLIQRPTPRILEGAEQLCADLDRVRARRGE 296          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A1F6TQ09_9PROT (Cobalamin-binding protein n=3 Tax=Candidatus Muproteobacteria TaxID=1817795 RepID=A0A1F6TQ09_9PROT)

HSP 1 Score: 253 bits (646), Expect = 1.960e-80
Identity = 136/270 (50.37%), Postives = 170/270 (62.96%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGSEAEDAGVGN------WKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKAR 792
            V DD G    L  PA RVVSL+PH+TEL+++ GAG  +VG V  SDYPEAA  I ++G   GLD E IV  RP +++AW SGN    +ERLR LGL V V E R ++D+A ++  LG L GT   A   AR F QR +ALR RYA R  V V ++IW RPL TVNG  +IS +I LCGGRN+FADLP LA  V +E VLA +P AIV    A  AG         W+R+  L+AVR  ++F V  D + R  PR+ + AEHLCA L+ AR
Sbjct:   26 VPDDAGATVVLAAPARRVVSLAPHVTELLYAAGAGGYVVGAVDYSDYPEAAKRIPRVGSYTGLDLEAIVALRPDLIIAWQSGNPPSQVERLRALGLAVYVSEPRHIEDVATNIERLGRLAGTADAALRAARAFRQRHEALRRRYAARPAVTVFYQIWDRPLMTVNGKQLISDVIHLCGGRNVFADLPILAPTVDVEAVLAADPEAIV----ASGAGASRPEWFDAWRRWPQLRAVRRDNLFVVPPDVLQRHGPRILDGAEHLCADLEAAR 291          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A521XGX4_9PROT (Cobalamin-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XGX4_9PROT)

HSP 1 Score: 253 bits (646), Expect = 2.030e-80
Identity = 125/267 (46.82%), Postives = 172/267 (64.42%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGSEAEDA---GVGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKAR 792
            V DD G    L+ PA+R++SL+PHLTEL+F+ GAG + +GTV  SDYPE A  +A++GD+  LD ERIV  RP ++L W  GN +  +++L  LG+PV   +  RL DI R +  LG L GT+V A  VAR F  R   LR RYAGR PVRV ++IW +PL T+N  H+IS +I LCGG N+ ADL  LA  +S E VLA +P  ++ G+ AE      + NWK +  + AV+  ++F +  D ++R TPRV + A+ +C  LDKAR
Sbjct:   25 VTDDAGRAVTLKAPAQRIISLAPHLTELLFAAGAGKQAIGTVEFSDYPEGARAVARVGDSALLDLERIVELRPDLILVWQHGNAQRQLDKLLSLGIPVFYDQPNRLSDIPRSIERLGRLAGTEVVATSVARAFRAREADLRKRYAGRAPVRVFYQIWEQPLMTINDEHLISDVIRLCGGHNVMADLKQLAPVISTEAVLAADPE-VIAGATAEPNMRDDLDNWKTWPRILAVKRDNLFVIHTDLISRHTPRVLDGAQQMCENLDKAR 290          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A7R7JFC7_9GAMM (Cobalamin-binding protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7R7JFC7_9GAMM)

HSP 1 Score: 251 bits (641), Expect = 9.260e-80
Identity = 123/266 (46.24%), Postives = 175/266 (65.79%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGS--EAEDAGVGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKAR 792
            V D +G    L+ PA+R+VSL+P LTEL ++ GAG R+VG V  SDYP  A  +  +G+A  +D E ++  +P +VLAWGSGN    + R RQLG+PV + E   L DIA  L  +G L GT+ +A+  AR+F  R DAL+ +Y+ R  VRV +E+WHRPL TVNG H IS +I LCGGRN+FA+LP L+G+V+LE VLA +P+AIV G         + +W+R+  L+AVR + +F +  D + R +PR+ + AE +C  L++ R
Sbjct:   20 VEDMSGQALVLDAPAQRIVSLAPSLTELAYAAGAGERLVGAVAYSDYPAPARRLPAVGNANRIDLEAVLALQPDVVLAWGSGNPSAQLARFRQLGIPVFIAEPHSLDDIALLLERIGVLAGTRARADQAAREFRARRDALQAQYSDRPVVRVFYEVWHRPLMTVNGDHTISAVIRLCGGRNLFAELPQLSGQVTLEAVLAADPDAIVAGGMDATRPEWLDHWQRWPRLRAVRNAHIFHIPPDLIHRHSPRILDGAERMCELLEQVR 285          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A0A2U8GZS9_9RHOO (Cobalamin-binding protein n=4 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2U8GZS9_9RHOO)

HSP 1 Score: 251 bits (641), Expect = 1.350e-79
Identity = 119/268 (44.40%), Postives = 169/268 (63.06%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGS--EAEDAGVGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKARHQ 798
            + DDTG    L++PA+R+VSL+PHLTEL+F+ GAGS++VG V  SD+PEAA  + Q+G    +D E +   +P +V+AW SGNR   ++RL  LG+P+ + E R L D+AR L   G L GT  +A   A  F  R+ +LR+RY+   PVR  +++W RPL T+NG H+I  +I LCGG N+FADLP LA  V+ E VLA NP AIV     +A    +  W+R+  + AV   ++F +    + R TPR+ + A  LC  LD+AR +
Sbjct:   26 ITDDTGAALHLKQPAQRIVSLAPHLTELLFAAGAGSKVVGVVSYSDFPEAAKALPQVGSYTNVDMEALAALKPDLVVAWKSGNRNAHLDRLSALGIPLFINEPRNLDDVARALETFGELAGTSAEARTAAARFRARLTSLRSRYSTLPPVRTFYQVWDRPLMTINGEHLIGDVIRLCGGENVFADLPQLAPTVNAESVLAANPEAIVASGMGDARPEWLDQWRRWPSISAVAGDNLFFIPPTIIQRHTPRILDGASRLCEQLDEARRR 293          
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Match: A1KBD0_AZOSB (Putative vitamin B12 transport protein n=2 Tax=Azoarcus sp. (strain BH72) TaxID=418699 RepID=A1KBD0_AZOSB)

HSP 1 Score: 251 bits (640), Expect = 1.800e-79
Identity = 125/266 (46.99%), Postives = 172/266 (64.66%), Query Frame = 1
Query:    1 VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEAAHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLVLEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPVRVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLAKNPNAIVIGS--EAEDAGVGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVAEAAEHLCAGLDKAR 792
            + DD G +  L RPA+R+VSL+PH+TEL+F+ GA  R+VG V  SD+P+AA  + ++G    +D E +V  RP +V+AW SGNR   ++RL  LG+PV + E RRL D+A  LR LG L GT   AE  A  F  R DALRNRYA R  VR+L++IW++PL TVNG H+IS +I LCGG N+FA LP LA  + +E VLA NP  +V     EA    +  WKR+  L A   ++++ +  + V R TPR+ + A+ LC  L++AR
Sbjct:   27 ITDDAGREVVLPRPAQRIVSLAPHVTELLFAAGAAPRVVGVVSYSDFPDAARQLPKVGGYASVDLEAVVALRPDLVIAWKSGNRNTHLDRLTALGIPVFINEPRRLDDVAGSLRSLGRLAGTDEVAERAASAFAARRDALRNRYAERPKVRMLYQIWNQPLMTVNGEHLISDVIRLCGGDNVFAGLPQLAPTIGVEAVLAANPEVVVASGMGEARPEWLEQWKRWPALTANAANNLYFIPPELVQRHTPRILDGAQRLCEQLEEAR 292          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17626.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7KAY2_9RHOO1.500e-8246.62Cobalamin-binding protein n=1 Tax=Zoogloea sp. Tax... [more]
A0A7C1TZF4_9GAMM1.650e-8248.50Cobalamin-binding protein n=2 Tax=root TaxID=1 Rep... [more]
A0A2N5LCJ8_9RALS4.570e-8145.93Cobalamin-binding protein n=3 Tax=Ralstonia TaxID=... [more]
A0A848G4L5_9RHOO8.900e-8144.78Cobalamin-binding protein n=2 Tax=Zoogloea TaxID=3... [more]
A0A369CM39_9GAMM1.480e-8048.34Iron complex transport system substrate-binding pr... [more]
A0A1F6TQ09_9PROT1.960e-8050.37Cobalamin-binding protein n=3 Tax=Candidatus Mupro... [more]
A0A521XGX4_9PROT2.030e-8046.82Cobalamin-binding protein n=1 Tax=Betaproteobacter... [more]
A0A7R7JFC7_9GAMM9.260e-8046.24Cobalamin-binding protein n=3 Tax=Gammaproteobacte... [more]
A0A2U8GZS9_9RHOO1.350e-7944.40Cobalamin-binding protein n=4 Tax=Betaproteobacter... [more]
A1KBD0_AZOSB1.800e-7946.99Putative vitamin B12 transport protein n=2 Tax=Azo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17626contigP-wetherbeei_contig17626:3..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog62928.azo3520
PFAMsPeripla_BP_2
Model size810
Max annot lvl206389|Rhodocyclales
KEGG koko:K02016
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.95e-80
EggNOG OGsCOG0614@1|root,COG0614@2|Bacteria,1MWVF@1224|Proteobacteria,2VJ7T@28216|Betaproteobacteria,2KU8W@206389|Rhodocyclales
DescriptionABC-type Fe3 -hydroxamate transport system, periplasmic component
Cds size810
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.680813-CDS-P-wetherbeei_contig17626:2..8121683186121.680813-CDS-P-wetherbeei_contig17626:2..812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17626 3..812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17626.1.1prot_P-wetherbeei_contig17626.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17626 3..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17626.1.1

>prot_P-wetherbeei_contig17626.1.1 ID=prot_P-wetherbeei_contig17626.1.1|Name=mRNA_P-wetherbeei_contig17626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp
VVDDTGVDFRLERPAERVVSLSPHLTELMFSIGAGSRMVGTVRGSDYPEA
AHGIAQIGDAVGLDFERIVHARPQIVLAWGSGNRKVDIERLRQLGLPVLV
LEARRLQDIARHLRMLGALTGTQVQAEGVARDFEQRIDALRNRYAGRDPV
RVLFEIWHRPLFTVNGSHIISRLIELCGGRNIFADLPDLAGEVSLEQVLA
KNPNAIVIGSEAEDAGVGNWKRFSYLKAVRTSSVFTVSADQVTRQTPRVA
EAAEHLCAGLDKARHQANE*
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mRNA from alignment at P-wetherbeei_contig17626:3..812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17626.1.1 ID=mRNA_P-wetherbeei_contig17626.1.1|Name=mRNA_P-wetherbeei_contig17626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig17626:3..812+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCGACGACACCGGCGTTGATTTTCGTCTGGAGCGCCCGGCCGAGCG TGTCGTCTCGCTGTCGCCGCACCTGACCGAGTTGATGTTTTCGATCGGTG CCGGATCGAGGATGGTCGGCACCGTGCGTGGCAGCGATTACCCGGAGGCT GCTCACGGCATTGCGCAAATCGGCGACGCCGTGGGCCTCGATTTCGAGCG CATCGTTCACGCGCGTCCGCAAATCGTACTGGCCTGGGGCAGCGGCAACC GCAAGGTCGACATCGAGCGCCTTCGCCAATTGGGATTGCCGGTGCTGGTG CTGGAAGCGCGGCGGCTACAGGACATCGCCCGGCATCTTCGTATGCTTGG CGCCCTGACCGGCACGCAAGTGCAGGCCGAGGGTGTTGCGCGGGACTTCG AGCAACGCATCGATGCGCTGCGCAACCGTTATGCCGGGCGCGACCCCGTG CGGGTGCTGTTCGAAATCTGGCACCGGCCATTGTTCACGGTGAACGGCAG CCACATCATCAGCAGACTGATCGAGCTGTGCGGCGGGCGCAACATCTTTG CCGACTTGCCGGATCTGGCAGGTGAGGTCTCGCTGGAACAGGTGTTGGCG AAGAATCCGAATGCGATCGTGATTGGCTCCGAAGCCGAAGATGCCGGCGT TGGCAACTGGAAGCGGTTTTCTTATCTGAAAGCCGTGCGTACCAGCAGCG TTTTTACCGTTTCCGCGGATCAGGTCACCCGGCAGACGCCCCGCGTGGCC GAAGCCGCGGAACATCTGTGTGCCGGCCTGGACAAGGCCAGGCATCAGGC GAACGAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17626:3..812+

>mRNA_P-wetherbeei_contig17626.1.1 ID=mRNA_P-wetherbeei_contig17626.1.1|Name=mRNA_P-wetherbeei_contig17626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig17626:3..812+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCGACGACACCGGCGTTGATTTTCGTCTGGAGCGCCCGGCCGAGCG
TGTCGTCTCGCTGTCGCCGCACCTGACCGAGTTGATGTTTTCGATCGGTG
CCGGATCGAGGATGGTCGGCACCGTGCGTGGCAGCGATTACCCGGAGGCT
GCTCACGGCATTGCGCAAATCGGCGACGCCGTGGGCCTCGATTTCGAGCG
CATCGTTCACGCGCGTCCGCAAATCGTACTGGCCTGGGGCAGCGGCAACC
GCAAGGTCGACATCGAGCGCCTTCGCCAATTGGGATTGCCGGTGCTGGTG
CTGGAAGCGCGGCGGCTACAGGACATCGCCCGGCATCTTCGTATGCTTGG
CGCCCTGACCGGCACGCAAGTGCAGGCCGAGGGTGTTGCGCGGGACTTCG
AGCAACGCATCGATGCGCTGCGCAACCGTTATGCCGGGCGCGACCCCGTG
CGGGTGCTGTTCGAAATCTGGCACCGGCCATTGTTCACGGTGAACGGCAG
CCACATCATCAGCAGACTGATCGAGCTGTGCGGCGGGCGCAACATCTTTG
CCGACTTGCCGGATCTGGCAGGTGAGGTCTCGCTGGAACAGGTGTTGGCG
AAGAATCCGAATGCGATCGTGATTGGCTCCGAAGCCGAAGATGCCGGCGT
TGGCAACTGGAAGCGGTTTTCTTATCTGAAAGCCGTGCGTACCAGCAGCG
TTTTTACCGTTTCCGCGGATCAGGTCACCCGGCAGACGCCCCGCGTGGCC
GAAGCCGCGGAACATCTGTGTGCCGGCCTGGACAAGGCCAGGCATCAGGC
GAACGAGTAA
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