mRNA_P-wetherbeei_contig17624.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17624.1.1
Unique NamemRNA_P-wetherbeei_contig17624.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A7S2FNC6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNC6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.250e-28
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGGGYED---YRFGDDEL 276
            + YLYNLKN+LED++KGLA KL E DKEEL +TI EA+DWLDEN EA+ ++   KQKEVEQVA+PIM+  YQS G   G        Y FGDDEL
Sbjct:   99 EGYLYNLKNTLEDDEKGLADKLSEEDKEELDNTINEALDWLDENPEAEAEEFDEKQKEVEQVANPIMRELYQSAGGPGGXXXXXXXXYDFGDDEL 193          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: D7FQC8_ECTSI (Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQC8_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.900e-27
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGGGYEDYRFGDDEL 276
            +SYLYN+KN L+DE+KG++ K+ EADKEEL STI EA+DWLDE  +A+L+DL+ K+KEVEQ+A+PIMK  YQ   +  GG  ED+ FGDDEL
Sbjct:  568 ESYLYNMKNLLDDEEKGVSDKISEADKEELESTINEALDWLDETPDAELEDLEDKKKEVEQIANPIMKDLYQQ--APQGGPEEDFDFGDDEL 657          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A482V499_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V499_9ARCH)

HSP 1 Score: 100 bits (250), Expect = 2.750e-25
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGGGYEDYRFGDDEL 276
            +SYLYNLKN++ DE+KG+A K+ EA+K EL S I E +DWL+EN EA+ +D   KQKEVE+VA+PIM+  YQ  G A GG  E+   GDDEL
Sbjct:   56 ESYLYNLKNTINDEEKGIADKIEEAEKTELTSLIDETLDWLEENPEAEAEDYTAKQKEVEKVANPIMRKVYQGSG-APGGADEEADEGDDEL 146          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A6V2YLG4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2YLG4_HETAK)

HSP 1 Score: 107 bits (266), Expect = 5.290e-25
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAG-GGYEDYRFGDDEL 276
            +SYLYNLKN L+D++ GL  KL  ADKEEL STI +A+DWLD+  E    D K KQKEVEQ+ASPIMK  YQ Q  + G    +DY FGDDEL
Sbjct:  565 ESYLYNLKNILDDDESGLGDKLSAADKEELESTINDALDWLDDTPEGDAQDYKDKQKEVEQIASPIMKELYQGQAPSGGRDDDDDYDFGDDEL 657          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A7R9ZHJ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHJ9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.620e-24
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGGGYEDYRFGDDEL 276
            +SYLYNLKN+LED++KG+A  +   DK+EL   I E +DW+DEN EA+ DD   KQKEVE +A+PIM+ FY   G   G   +   FGDDEL
Sbjct:  127 ESYLYNLKNTLEDDEKGMADAISAEDKKELQDIIDETLDWMDENPEAEKDDYDEKQKEVENIANPIMRQFYAGGGGEGGADEDMGDFGDDEL 218          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A7S3M987_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M987_9STRA)

HSP 1 Score: 102 bits (255), Expect = 9.560e-24
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGGGYEDYRFGDDEL 276
            +SYLYNLKN+L DE+KG++ K+  A+K EL S I E++DWL+EN EA+ ++   KQKEVEQVA+PIM+  YQ QG A GG  E+  FGDDEL
Sbjct:  367 ESYLYNLKNTLNDEEKGISEKIEAAEKNELLSLIDESLDWLEENQEAEGEEYAAKQKEVEQVANPIMRKVYQGQGGAPGGDDEE-DFGDDEL 457          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A7S0QBG8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBG8_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 1.020e-23
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGGGYEDYRFGDD 270
            +S+LYNLKN+L DE+KG++ K+  A+K+EL + I E++DWL+EN EA  D+   KQKEVEQVA+PIM+  YQ  G A GG  ED  FGDD
Sbjct:  104 ESFLYNLKNTLNDEEKGISEKIEAAEKDELMTMIDESLDWLEENPEADADEYTAKQKEVEQVANPIMRKVYQGTGGAPGG-EEDEDFGDD 192          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A7S2UT55_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UT55_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.220e-22
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGGGYEDYR-FGDDEL 276
            +SYLYNLKN+L+D++KGL+ ++   DK+EL   I EA+DW+DEN EA+ +D   KQKEVEQVA+PIM+ FY + G+  G   ED   FGDDEL
Sbjct:  432 ESYLYNLKNTLDDDEKGLSDQISAEDKKELVDMIDEALDWMDENPEAEKEDYDEKQKEVEQVANPIMRQFYAA-GAGGGAAEEDMGDFGDDEL 523          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A5A8E307_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E307_CAFRO)

HSP 1 Score: 99.8 bits (247), Expect = 1.620e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGG--GYEDYRFGDDEL 276
            +SY Y+LKN +EDE+KG+AGK+ E DKE L + + EA+DWLDEN EA+ D+ + K+KEVE+VA+PI+K  Y S G  AGG  G +D  F  +EL
Sbjct:  419 ESYCYSLKNQIEDEEKGIAGKVDEEDKEALETAVQEALDWLDENQEAEKDEFEAKRKEVEEVANPIIKKVYASTGGDAGGAQGEDDEDFDHEEL 512          
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Match: A0A5A8DEY2_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DEY2_CAFRO)

HSP 1 Score: 99.8 bits (247), Expect = 1.990e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLDDLKHKQKEVEQVASPIMKSFYQSQGSAAGG--GYEDYRFGDDEL 276
            +SY Y+LKN +EDE+KG+AGK+ E DKE L + + EA+DWLDEN EA+ D+ + K+KEVE+VA+PI+K  Y S G  AGG  G +D  F  +EL
Sbjct:  569 ESYCYSLKNQIEDEEKGIAGKVDEEDKEALETAVQEALDWLDENQEAEKDEFEAKRKEVEEVANPIIKKVYASTGGDAGGAQGEDDEDFDHEEL 662          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17624.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FNC6_9STRA2.250e-2861.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D7FQC8_ECTSI1.900e-2761.96Molecular chaperones GRP78/BiP/KAR2, HSP70 superfa... [more]
A0A482V499_9ARCH2.750e-2557.61Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6V2YLG4_HETAK5.290e-2560.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9ZHJ9_9STRA6.620e-2453.26Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3M987_9STRA9.560e-2458.70Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0QBG8_9EUKA1.020e-2356.67Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S2UT55_9STRA1.220e-2255.91Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A5A8E307_CAFRO1.620e-2254.26Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DEY2_CAFRO1.990e-2254.26Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17624contigP-wetherbeei_contig17624:1021..1299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr54246
PFAMsHSP70
Model size279
Max annot lvl2836|Bacillariophyta
KEGG koko:K09490
KEGG TC1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.37e-21
EggNOG OGsCOG0443@1|root,KOG0100@2759|Eukaryota,2XAUE@2836|Bacillariophyta
DescriptionBelongs to the heat shock protein 70 family
Cds size279
COG categoryO
BRITEko00000,ko00001,ko03110,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.6189322-CDS-P-wetherbeei_contig17624:1020..12991683186121.6189322-CDS-P-wetherbeei_contig17624:1020..1299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17624 1021..1299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17624.1.1prot_P-wetherbeei_contig17624.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17624 1021..1299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17624.1.1

>prot_P-wetherbeei_contig17624.1.1 ID=prot_P-wetherbeei_contig17624.1.1|Name=mRNA_P-wetherbeei_contig17624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
QSYLYNLKNSLEDEDKGLAGKLGEADKEELASTIAEAIDWLDENAEAQLD
DLKHKQKEVEQVASPIMKSFYQSQGSAAGGGYEDYRFGDDEL*
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mRNA from alignment at P-wetherbeei_contig17624:1021..1299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17624.1.1 ID=mRNA_P-wetherbeei_contig17624.1.1|Name=mRNA_P-wetherbeei_contig17624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig17624:1021..1299- (Phaeothamnion wetherbeei SAG_119_79)
CAGAGCTACCTGTACAACCTGAAGAATTCGCTGGAGGACGAGGACAAGGG GCTGGCGGGCAAGCTGGGCGAGGCGGACAAGGAGGAGCTCGCGTCGACCA TCGCCGAGGCGATCGACTGGCTCGACGAGAACGCCGAGGCGCAGCTCGAC GACCTCAAGCACAAGCAGAAGGAGGTCGAGCAGGTGGCCAGCCCCATCAT GAAGAGCTTTTATCAGAGCCAGGGGTCGGCGGCGGGCGGCGGCTACGAGG ACTATCGTTTTGGCGACGATGAGCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17624:1021..1299-

>mRNA_P-wetherbeei_contig17624.1.1 ID=mRNA_P-wetherbeei_contig17624.1.1|Name=mRNA_P-wetherbeei_contig17624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig17624:1021..1299- (Phaeothamnion wetherbeei SAG_119_79)
CAGAGCTACCTGTACAACCTGAAGAATTCGCTGGAGGACGAGGACAAGGG
GCTGGCGGGCAAGCTGGGCGAGGCGGACAAGGAGGAGCTCGCGTCGACCA
TCGCCGAGGCGATCGACTGGCTCGACGAGAACGCCGAGGCGCAGCTCGAC
GACCTCAAGCACAAGCAGAAGGAGGTCGAGCAGGTGGCCAGCCCCATCAT
GAAGAGCTTTTATCAGAGCCAGGGGTCGGCGGCGGGCGGCGGCTACGAGG
ACTATCGTTTTGGCGACGATGAGCTCTGA
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