mRNA_P-wetherbeei_contig17602.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17602.1.1
Unique NamemRNA_P-wetherbeei_contig17602.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: A0A835YHX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHX5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.310e-20
Identity = 41/71 (57.75%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRR 213
            Y A+QY DA D YT+AL   PD + E++NKA++F+NRAACH++LE++ QVV DC+ AL +K +YVKAL+RR
Sbjct:   19 YLAKQYLDAADCYTLALEFCPDDEGERENKAVYFSNRAACHLRLEDFQQVVNDCTEALTIKPKYVKALLRR 89
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: A0A024ULW4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULW4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.680e-18
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRRAAANEKLEKYDLALEDIK 267
            +KA +Y DA D YT ALR  P  D+   NKA++F+NRAAC + L    + +EDC+ A+    +YVKALMRR+ A EK++K D AL+D+K
Sbjct:   61 FKAGRYLDAFDLYTKALRLCPSEDEYAYNKAVYFSNRAACLLHLGRPEESIEDCTMAITHSPKYVKALMRRSQAYEKMDKMDEALQDVK 149
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: A0A485KN11_9STRA (Aste57867_9323 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KN11_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.240e-17
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRRAAANEKLEKYDLALEDIK 267
            +K  +Y DA D Y+ ALR  P  D+   NKA++F+NRAAC + L    + +EDC+ A+EL  +YVKA MRR+ A EK++K + AL+D+K
Sbjct:   73 FKDGRYLDAYDLYSKALRLCPSEDEYAYNKAVYFSNRAACLLHLGRPDESIEDCTMAIELSPKYVKAYMRRSQAYEKIDKLEEALKDVK 161
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: UPI001C9D1E47 (mitochondrial import receptor subunit TOM70 n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9D1E47)

HSP 1 Score: 84.7 bits (208), Expect = 6.750e-17
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:    1 YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRRAAANEKLEKYDLALEDI 264
            +KA +Y++A+ +Y MA+   P   D K + A F+ NRAA + QL+++  V EDC+RALELK +YVKAL+RRA A E++ K +L LED+
Sbjct:   97 FKAGKYDEAIAHYNMAIEACPK--DNKSDLATFYQNRAAAYEQLKKYTAVKEDCTRALELKPKYVKALLRRARAMERMNKLELVLEDV 182
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: A0A5D6YCW4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCW4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.760e-16
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   13 QYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRRAAANEKLEKYDLALED 261
            +Y DA+D Y+ AL+  PD  D   N+A++F+NRAAC I+L    + ++DC++A+EL   YVKAL+RRA A EKL++ D AL D
Sbjct:   78 KYLDAIDCYSTALKLCPDDADYAYNRAVYFSNRAACLIRLGRPEEAIDDCTQAIELSPTYVKALVRRAEAYEKLDRLDEALRD 160
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: A0A0G4FAQ0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FAQ0_VITBC)

HSP 1 Score: 81.6 bits (200), Expect = 7.790e-16
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRRAAANEKLEKYDLALEDIK 267
            YK  Q+E+A+D YT AL   P   D+   KAI FANRAACH+QLE++  V  DCS A+     YVKA MRR +A EKLE++  AL D++
Sbjct:  317 YKDGQFEEAIDIYTEALYLCPP--DQAKLKAIIFANRAACHMQLEKYDLVAADCSDAIASDTTYVKAFMRRCSAYEKLERWHDALTDMQ 403
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: D7G6Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.600e-15
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMR 210
            YK  ++EDAVDYYTMAL   P+ +  K ++A+F ANRA  H++LEE+  VVEDC+ ALEL   YVKAL+R
Sbjct:  239 YKNGEFEDAVDYYTMALHYCPEDEAHKKDRAVFLANRAQGHLRLEEYETVVEDCTAALELDPSYVKALLR 308
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: M7WNG0_RHOT1 (Mitochondrial outer membrane translocase receptor TOM70 n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7WNG0_RHOT1)

HSP 1 Score: 80.1 bits (196), Expect = 2.840e-15
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRRAAANEKLEKYDLALEDIKVRFCWFVPS 294
            Y A+QY++A+DYYT A++C        + +A+F++NRAAC+  L +  +VVEDCS AL L  +Y+KAL RRA A E+L       E++ +  C F  S
Sbjct:  128 YSAKQYQEAIDYYTKAIQC--------EEQAVFYSNRAACYTNLNQLDKVVEDCSNALRLDPQYIKALNRRATAREQLGD----AENLYLSLCDFTAS 213
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: G0SV25_RHOT2 (ADP/ATP carrier receptor n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=G0SV25_RHOT2)

HSP 1 Score: 80.1 bits (196), Expect = 2.920e-15
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRRAAANEKLEKYDLALEDIKVRFCWFVPS 294
            Y A+QY++A+DYYT A++C        + +A+F++NRAAC+  L +  +VVEDCS AL L  +Y+KAL RRA A E+L       E++ +  C F  S
Sbjct:  128 YSAKQYQEAIDYYTKAIQC--------EEQAVFYSNRAACYTNLNQLDKVVEDCSNALRLDPQYIKALNRRATAREQLGD----AENLYLSLCDFTAS 213
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BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Match: A0A1U8A8I7_NELNU (tetratricopeptide repeat protein 1-like isoform X1 n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A8I7_NELNU)

HSP 1 Score: 78.2 bits (191), Expect = 3.130e-15
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    7 ARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQVVEDCSRALELKERYVKALMRRAAANEKLEKYDLALEDIK 267
            A QYEDA+  Y +AL+ +P+     + ++I  ANRA C ++L ++   +++C+RALEL   Y+KAL+RR  A+EKLE Y+ A+ D+K
Sbjct:   94 AGQYEDALSQYELALQLAPEMPSSVEIRSICHANRAICFLKLGKYNDTIKECTRALELNPTYMKALVRRGEAHEKLENYEEAISDMK 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17602.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YHX5_9STRA3.310e-2057.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A024ULW4_9STRA1.680e-1849.44Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KN11_9STRA2.240e-1747.19Aste57867_9323 protein n=1 Tax=Aphanomyces stellat... [more]
UPI001C9D1E476.750e-1748.86mitochondrial import receptor subunit TOM70 n=1 Ta... [more]
A0A5D6YCW4_9STRA1.760e-1649.40Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0G4FAQ0_VITBC7.790e-1651.69Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
D7G6Y9_ECTSI1.600e-1557.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
M7WNG0_RHOT12.840e-1542.86Mitochondrial outer membrane translocase receptor ... [more]
G0SV25_RHOT22.920e-1542.86ADP/ATP carrier receptor n=2 Tax=Rhodosporidium to... [more]
A0A1U8A8I7_NELNU3.130e-1543.68tetratricopeptide repeat protein 1-like isoform X1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17602contigP-wetherbeei_contig17602:339..1059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008863387.1
Preferred nameTTC1
PFAMsTPR_1,TPR_2,TPR_8
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K04136,ko:K07562
KEGG Pathwayko03008,ko03013,ko04020,ko04022,ko04080,ko04261,ko04270,ko04970,map03008,map03013,map04020,map04022,map04080,map04261,map04270,map04970
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0001664,GO:0001666,GO:0002931,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010604,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016234,GO:0016567,GO:0016740,GO:0017015,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019904,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030162,GO:0030163,GO:0030433,GO:0030512,GO:0030544,GO:0030579,GO:0030674,GO:0030911,GO:0030968,GO:0031072,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031334,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031647,GO:0031674,GO:0031943,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032350,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034450,GO:0034605,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0042803,GO:0042886,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043292,GO:0043393,GO:0043412,GO:0043632,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045184,GO:0045732,GO:0045862,GO:0046332,GO:0046907,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0051865,GO:0051879,GO:0060090,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070534,GO:0070585,GO:0070647,GO:0070727,GO:0070887,GO:0071218,GO:0071310,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090034,GO:0090035,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0099080,GO:0099081,GO:0099512,GO:0101031,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903844,GO:1903845,GO:1990234,GO:2000058,GO:2000060
Exons2
Evalue2.75e-19
EggNOG OGsKOG4234@1|root,KOG4234@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_011720.1
Descriptionprotein binding, bridging
Cds size327
COG categoryS
BRITEko00000,ko00001,ko03009,ko04030
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.1554117-CDS-P-wetherbeei_contig17602:338..4851683186121.1554117-CDS-P-wetherbeei_contig17602:338..485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17602 339..485 +
1683186121.169887-CDS-P-wetherbeei_contig17602:879..10591683186121.169887-CDS-P-wetherbeei_contig17602:879..1059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17602 880..1059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17602.1.1prot_P-wetherbeei_contig17602.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17602 339..1059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17602.1.1

>prot_P-wetherbeei_contig17602.1.1 ID=prot_P-wetherbeei_contig17602.1.1|Name=mRNA_P-wetherbeei_contig17602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
YKARQYEDAVDYYTMALRCSPDADDEKDNKAIFFANRAACHIQLEEWPQV
VEDCSRALELKERYVKALMRRAAANEKLEKYDLALEDIKVRFCWFVPSRF
FSSRLLSLM
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mRNA from alignment at P-wetherbeei_contig17602:339..1059+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17602.1.1 ID=mRNA_P-wetherbeei_contig17602.1.1|Name=mRNA_P-wetherbeei_contig17602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=721bp|location=Sequence derived from alignment at P-wetherbeei_contig17602:339..1059+ (Phaeothamnion wetherbeei SAG_119_79)
TACAAGGCGCGGCAGTACGAGGACGCAGTGGACTACTACACCATGGCGCT
GCGCTGCAGCCCCGATGCCGACGACGAGAAGGACAACAAGGCCATCTTCT
TCGCCAACCGCGCCGCCTGCCACATCCAACTGGAGGAGTGGCCGCAGGTA
CTTGCATGTGTGGGTCTTCTGTAATTAGGCGCGACCGCGCTGACGCCGGC
CGGCCTGCCGCTTCTCGTGGAGATCTTTTCCTTAGATGCATCTATCTTCC
CTTGATATTCTGCTTTACGTGGAGGCTCTCTCCCAGCGTTCATTGAGATT
TTCCTTGGAGCGTTTCCTTATTCGTTCAGTGAGAATGCCCACTTCTTCTT
TGGCGCGGAGCAACCTTCCTGCCTAAAGCCCTGCCGGTTTCCAGCCGTTC
TGTTTCCTTGGCGAATGCTCTTGCTGCGGCGGAATTCTACCCCTCGCCTT
TCCCGCCTGCGCCTGGCGACATTTTTCTCCCAATCCTTGACTGTCGATGC
TAGCCGCGGCCCGCCGCCCGTCCGCCGCTTTTTTGCGACAGGTGGTGGAA
GACTGCAGCCGGGCGCTGGAGCTCAAGGAGCGCTATGTCAAGGCGCTGAT
GCGGCGGGCGGCCGCCAACGAGAAGCTCGAGAAGTACGACCTCGCCCTCG
AGGACATCAAGGTCCGTTTCTGTTGGTTCGTTCCGTCTCGTTTCTTCTCG
AGCCGTCTCTTGTCATTAATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17602:339..1059+

>mRNA_P-wetherbeei_contig17602.1.1 ID=mRNA_P-wetherbeei_contig17602.1.1|Name=mRNA_P-wetherbeei_contig17602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig17602:339..1059+ (Phaeothamnion wetherbeei SAG_119_79)
TACAAGGCGCGGCAGTACGAGGACGCAGTGGACTACTACACCATGGCGCT
GCGCTGCAGCCCCGATGCCGACGACGAGAAGGACAACAAGGCCATCTTCT
TCGCCAACCGCGCCGCCTGCCACATCCAACTGGAGGAGTGGCCGCAGGTG
GTGGAAGACTGCAGCCGGGCGCTGGAGCTCAAGGAGCGCTATGTCAAGGC
GCTGATGCGGCGGGCGGCCGCCAACGAGAAGCTCGAGAAGTACGACCTCG
CCCTCGAGGACATCAAGGTCCGTTTCTGTTGGTTCGTTCCGTCTCGTTTC
TTCTCGAGCCGTCTCTTGTCATTAATG
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