mRNA_P-wetherbeei_contig1760.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1760.4.1
Unique NamemRNA_P-wetherbeei_contig1760.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: A0A835Z710_9STRA (Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z710_9STRA)

HSP 1 Score: 744 bits (1920), Expect = 4.660e-266
Identity = 373/480 (77.71%), Postives = 421/480 (87.71%), Query Frame = 1
Query:   82 MRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRLGAEAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQE-CIGTTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDDLAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKEKPT 1518
            M+AAGVNPYAYTW V+H+   ++ QW +L  GEED+ A+VSVAGRIMARR+FGKLAFFAL+D +G++Q+YLDQ RLGAEAFG LK+W D GDIVGV G+VKRTDKGE+SV VS+WA+LTKSLLPLPDK+HGLKD EKRYRQR LD+IVNP+VRETFR R+ ITS LRR LD+ GFLEIETPVL+SVAGGAVAKPFETYHNALDL LTLRIATELHLKRLVVGG +RVYELGRIFRNEGISTRHNPEFTSVEIYQAYADY DMM+LTE+L+T A++  C G+TE++YQGT ISL  PWRRV+M  LV  A GFDFEAC D+A AK  A         G A+VGE+LN CFEELCE  L+QPTFVTDYP EVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTD+VDQR+R E QAAKKAAGD+EACDVDEDF+ ALEYG+PPTAGLGIGIDRL+MLLTDSPSIRDVIAFPLL+K++PT
Sbjct:    1 MQAAGVNPYAYTWDVTHSSDRIKAQWEALAAGEEDSEARVSVAGRIMARRVFGKLAFFALQDGAGSIQLYLDQARLGAEAFGQLKSWVDTGDIVGVKGSVKRTDKGEMSVAVSEWALLTKSLLPLPDKYHGLKDMEKRYRQRHLDLIVNPDVRETFRSRAAITSGLRRDLDEDGFLEIETPVLQSVAGGAVAKPFETYHNALDLPLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYSDMMDLTEKLITNAARRVCGGSTEISYQGTEISLTAPWRRVTMSDLVKGACGFDFEACTDVAEAKRVAAGAGVHSAAGKATVGEILNECFEELCESSLIQPTFVTDYPVEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDSVDQRQRFEVQAAKKAAGDDEACDVDEDFIDALEYGLPPTAGLGIGIDRLIMLLTDSPSIRDVIAFPLLKKDRPT 480          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: D7G3Y0_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y0_ECTSI)

HSP 1 Score: 683 bits (1762), Expect = 1.590e-239
Identity = 359/516 (69.57%), Postives = 411/516 (79.65%), Query Frame = 1
Query:   28 EEAPVAELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRLGAEAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELT---YQGTP--ISLARPWRRVSMGALVNDATGFDFEACD------DLAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKEKPTPAQAAAAA 1542
            E+ PVAELRAVRI K EE+RAAG NPYAY+W V+H+ +E+QKQW  L  G ED  A+VSVAGRIMARR+FGKLAFF ++D+ G+ Q+Y+D+GRLG E F  LKTWTDAGDIVG  GTVKRTDKGELSVYV  WAML+KS+LPLPDK+HGLKDTEKRYRQR +DM+VNP VR+ FR+R+++TS +RR LDD  FLEIETPVL+S+AGGA AKPF T+HN LD+ LTLRIATELHLKRLVVGG +RVYELGRIFRNEGISTRHNPEFTSVE+YQAYADY DMMELTERLV  A+ E +GTT ++    +G P  + L  PWRRV+M  LV +  G DFEA D       LA A+  A         G  + G +LN CFEELCE  L+QPT V D+P EVSPLAKPHR+KPGYTERFE+F+ GRE ANAFSELTD VDQR R E QAAKKAAGDEEACDVD+DFL ALE GMPPTAGLGIGIDRL+MLL  + SIRDVIAFPLLR E    A AAAAA
Sbjct:  192 EDTPVAELRAVRIGKAEEIRAAGGNPYAYSWDVTHSSSELQKQWEGLEAGTEDEEAEVSVAGRIMARRVFGKLAFFNMQDSEGSFQLYIDKGRLGDE-FKDLKTWTDAGDIVGAKGTVKRTDKGELSVYVKSWAMLSKSVLPLPDKFHGLKDTEKRYRQRHVDMMVNPAVRDVFRMRAKVTSFIRRSLDDDDFLEIETPVLQSIAGGAAAKPFATHHNVLDMPLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSVEVYQAYADYHDMMELTERLVAGAASEVLGTTAVSGGEEEGAPPDVDLKAPWRRVTMNDLVREKIGLDFEALDMSDPAAALATARETALKAGVHKAAGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLLAGATSIRDVIAFPLLRAENSEGAAAAAAA 706          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: A0A7S4LKB1_9EUGL (Lysine--tRNA ligase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LKB1_9EUGL)

HSP 1 Score: 669 bits (1727), Expect = 1.630e-234
Identity = 344/500 (68.80%), Postives = 400/500 (80.00%), Query Frame = 1
Query:   25 EEEAPVAELRAVRIAKVEEMR-AAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRLGAEAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDD----LAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKE 1509
            E E+ V + R  RIAK+  +R    + P+AY ++ + T A + ++W SL  GEED  A VS+AGR+M RR+FGKLAFF LRD +G VQ+Y+D+ R+ +E+F  LK + DAGDI+GV G+VKRT+KGE+S+ V++W MLTK+LLPLPDKW GLKD EKRYRQR LD+I +PEVRE FRLR++ITSTLR +LD  GFLEIETP L S AGGA AKPFET+HNALD+ LTLRIATELHLKRLVVGG ERVYE+GRIFRNEGISTRHNPEFTSVE YQAYADY DMMELTE ++   +++C+GTTEL Y GTPISLARPWRRV M  LV +ATG DF A       L  AKA A            +VG V+N+CFEELCE  L+QPTFV DYPKE+SPLA+PHRSKPG TERFELFIVGRETAN+FSELTD +DQRER EAQAAKKAAGDEEAC VDEDFL ALE GMPPT G+GIGIDRLVMLLTD+PSIRDVIAFPLLR E
Sbjct:  180 EAESGVEKQREDRIAKMHALRDELSIEPFAYKYEPTDTAAGVVEKWNSLEPGEEDEAADVSIAGRVMTRRVFGKLAFFTLRDQTGDVQLYIDKSRIPSESFAALKKYVDAGDIIGVRGSVKRTEKGEISIVVAEWTMLTKALLPLPDKWAGLKDKEKRYRQRELDLIASPEVREAFRLRAQITSTLRNILDSKGFLEIETPTLHSQAGGAEAKPFETHHNALDMDLTLRIATELHLKRLVVGGFERVYEVGRIFRNEGISTRHNPEFTSVEAYQAYADYNDMMELTEEVIVGIAEKCLGTTELEYGGTPISLARPWRRVPMHDLVAEATGVDFAALPHNEAGLEEAKAKAREAGVRDVDKCPTVGSVVNVCFEELCEPNLIQPTFVLDYPKEISPLARPHRSKPGLTERFELFIVGRETANSFSELTDPIDQRERFEAQAAKKAAGDEEACGVDEDFLRALEQGMPPTGGVGIGIDRLVMLLTDAPSIRDVIAFPLLRSE 679          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: A0A6S9KNJ0_HETAK (Lysine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KNJ0_HETAK)

HSP 1 Score: 665 bits (1716), Expect = 1.180e-233
Identity = 354/509 (69.55%), Postives = 407/509 (79.96%), Query Frame = 1
Query:    1 KQKAGAMAEEE-APVAELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRLGAEAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELTYQGTPISLARPWRRVSMGALVND--ATGFDFEACDDLAAA--KAAAXXXXXXXXXGAA---SVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLR 1503
            K KA A  EE+ APV+ELRAVR+ K++EM AAGVNP+AYT++ +H+ AE+Q  +  LP G+ED  A V+VAGR+ ARR+FGKLAFF L D  GTVQ+YLD+GRLG E FG LK WTD GDIVG  GT K+TDKGELSVY  +WAMLTK+LLPLPDK+HGL D + RYR+R LD+IVN  VR+TFR R++ITS LRRLLD+ GFLEIETPVL++V GGA AKPFET+HNA+D  +TLRIATELHLKRL+VGG ERVYELGRIFRNEG+STRHNPEFTSVEIYQAYADY DM++LTERL+ T +QE +GT ++ YQG  I L+  WRRV+M  LV +     FDF A D  A A  + A          GAA   SVGE+LN CFE L E+ L QPTFVTDYP E+SPLAKPHRSKPG TERFELFIVGRETANAFSELTD VDQR R E QAA KAAGD+EACDVDEDFL ALE GMPP  GLGIG+DRLVMLLTDSPSIRDVIAFPLL+
Sbjct:  125 KGKASADQEEDRAPVSELRAVRMKKIDEMAAAGVNPFAYTFRPTHSTAELQALYKDLPNGQEDEGADVAVAGRLTARRVFGKLAFFTLSDEHGTVQLYLDKGRLG-EDFGKLKAWTDGGDIVGARGTAKKTDKGELSVYAREWAMLTKALLPLPDKYHGLTDVQARYRKRHLDLIVNKGVRDTFRKRAQITSALRRLLDEDGFLEIETPVLQTVVGGAAAKPFETHHNAMDQAMTLRIATELHLKRLLVGGFERVYELGRIFRNEGVSTRHNPEFTSVEIYQAYADYHDMIDLTERLIGTIAQEVLGTQQVPYQGEVIDLSPGWRRVTMSDLVAEHMPDNFDFGALDPAAPASLEVAREKALAAGVAGAAKKGSVGEILNECFEALAEEGLTQPTFVTDYPVEISPLAKPHRSKPGLTERFELFIVGRETANAFSELTDPVDQRARFERQAALKAAGDDEACDVDEDFLQALEQGMPPAGGLGIGVDRLVMLLTDSPSIRDVIAFPLLK 632          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: UPI0016845CAC (lysine--tRNA ligase n=11 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI0016845CAC)

HSP 1 Score: 647 bits (1668), Expect = 2.290e-228
Identity = 329/495 (66.46%), Postives = 395/495 (79.80%), Query Frame = 1
Query:   46 ELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRLGA------EAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDDLAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKEK 1512
            ++RA R+ K+E+++  G+NPYAY W+ SH  A++Q+++A LP+GEE  + +V++AGRIMARR+FGKLAFF L+D +G++Q+YL++ R+          F  LK  TDAGDI+G  GTVKRT+KGELSVYV  +A+LTKSLLPLPDKWHGL D  KRYRQR +D+IVNPEVRETFR R+ IT+ +RR LD  GF+EIETPVL+  AGGA A+PF TYHN LD++L LRIATELHLKRL+VGG E+V+ELGRIFRNEGISTRHNPEFT++E+YQAYADY+DMM LTE ++TT +QE +GT E+TYQG PI+L  PWRRV+M  LV + TG DF A   L  AKAAA            S+G++LN  FE+ CE  L QPTFV DYP E+SPLAKPHRSKPG  ERFELFIVGRETAN+FSELTD +DQRERLEAQAA+KAAGD EA  VDEDFLTALEYGMPPT GLGIGIDRLVMLLTD  SIRD IAFPLL+ EK
Sbjct:    5 DIRATRLEKIEQLKQLGMNPYAYQWESSHHAAQLQEKYADLPSGEEVEV-EVAIAGRIMARRVFGKLAFFTLQDETGSIQLYLEKKRIDEGMADVPNVFKHLKDLTDAGDILGAKGTVKRTEKGELSVYVKQYAILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRETFRRRALITAGIRRYLDKLGFIEIETPVLQGEAGGADARPFITYHNTLDMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGISTRHNPEFTTIEVYQAYADYQDMMALTEGIITTVAQEVLGTLEITYQGEPINLTPPWRRVTMHDLVKEQTGLDFTAFPTLETAKAAASEAGIGGAEECESIGKILNEAFEQKCEPNLTQPTFVLDYPVEISPLAKPHRSKPGLVERFELFIVGRETANSFSELTDPIDQRERLEAQAARKAAGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDCASIRDAIAFPLLKPEK 498          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: A0A8J7BLN2_9CYAN (Lysine--tRNA ligase n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J7BLN2_9CYAN)

HSP 1 Score: 645 bits (1665), Expect = 6.870e-227
Identity = 327/494 (66.19%), Postives = 392/494 (79.35%), Query Frame = 1
Query:   46 ELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRLGA------EAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDDLAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKE 1509
            E+RA R+ KVE+++ AG+ PYAY W+V+H  A++Q ++A LP G ED L +V++AGRI+ARR+FGKLAFFAL+D +GT+Q+YLD+ ++ A      +AF LLK  TD GDI+GV G +KRT+KGELS+YVS++A+LTKSLLPLPDKWHGL D  KRYRQR +D+IVNPEVRETFR R+ IT+ +RR LD  GF+EIETPVL+S AGGA A+PF TYHN L++ L LRIATELHLKRL+VGG E+V+ELGR+FRNEGISTRHNPEFT++EIYQAY DY DMM LTE L+  A+Q  +GT ++TYQG  I L  PWRR +M  LV + TG DF     L  AKAAA            S+G +LN  FE+  E  L+QPTFV DYP E+SPLAKPHRSKPG  ERFELFIVGRET N+FSELTD +DQR+RLEAQAA+KAAGD EA DVDEDFLTALEYGMPPT GLGIGIDRLVMLLTDSPSIRD IAFPLL+ E
Sbjct:   18 EIRANRLQKVEQLKQAGLTPYAYRWEVTHHAADLQAKFADLPDGAEDPL-EVAIAGRILARRVFGKLAFFALQDETGTIQLYLDKKKVQAGMPETPDAFNLLKQLTDVGDIIGVRGNIKRTEKGELSIYVSEYAILTKSLLPLPDKWHGLTDIAKRYRQRYVDLIVNPEVRETFRRRALITAAMRRYLDQQGFIEIETPVLQSEAGGAEARPFVTYHNTLEMDLYLRIATELHLKRLIVGGFEKVFELGRVFRNEGISTRHNPEFTTIEIYQAYVDYNDMMALTEALIAYAAQSALGTLQITYQGEAIDLTPPWRRATMHELVQEKTGIDFSQFQTLDEAKAAARQAKIGGVDECESIGHILNEAFEQKVEATLIQPTFVLDYPVEISPLAKPHRSKPGLVERFELFIVGRETGNSFSELTDPIDQRQRLEAQAARKAAGDLEANDVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDAIAFPLLKPE 510          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: A0A251WD19_9CYAN (Lysine--tRNA ligase n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WD19_9CYAN)

HSP 1 Score: 642 bits (1655), Expect = 2.090e-226
Identity = 327/496 (65.93%), Postives = 397/496 (80.04%), Query Frame = 1
Query:   46 ELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRL-------GAEAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDDLAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKEK 1512
            +LRA RI K+E+++A G+NP+AY W+ SH+ A++Q ++A LP GEE  + +V+VAGRIMARR+FGKLAFF L+D +  +Q+YL++ R+        A+AF  LK+ TD GDI+GV GTVKRTDKGELSVYV ++ MLTKSLLPLPDK+HGL D   RYRQR +D+IVNPEVRETFR R+ IT+++RR LD  GF+EIETPVL   AGGA A+PF TYHN L+++L LRIATELHLKRLVVGG E+V+ELGRIFRNEG+STRHNPEFTS+E+YQAYADY DMM+LTE ++TTA+QE +GTT++TYQG  I L  PW+R++M  +V +ATG DF    DL AAK AA            S+G++LN  FE+  E  L+QPTF+ DYP E+SPLAKPHRSKPG  ERFELFIVGRETAN+FSELTD +DQR RLE QAA+KAAGD EA  VDEDFL ALE+GMPPT GLGIGIDRLVMLLTDSPSIRDVIAFPLL+ EK
Sbjct:    5 DLRATRIEKLEQLKALGMNPFAYQWKSSHSMADLQSKYADLPNGEEQPV-EVAVAGRIMARRVFGKLAFFTLQDETANIQLYLEKSRIQEFMGDRDADAFSHLKSLTDIGDIIGVKGTVKRTDKGELSVYVKEYTMLTKSLLPLPDKFHGLTDVATRYRQRYVDLIVNPEVRETFRRRALITASIRRYLDQQGFIEIETPVLMGEAGGADARPFITYHNTLEMELYLRIATELHLKRLVVGGFEKVFELGRIFRNEGVSTRHNPEFTSIEVYQAYADYNDMMDLTEAIITTAAQEVLGTTQITYQGQAIDLTAPWKRITMHDVVKEATGVDFATFTDLDAAKQAARAAGIHDIDDCPSIGKLLNEAFEQKVETTLMQPTFILDYPVEISPLAKPHRSKPGLVERFELFIVGRETANSFSELTDPLDQRARLEEQAARKAAGDLEAQGVDEDFLCALEHGMPPTGGLGIGIDRLVMLLTDSPSIRDVIAFPLLKPEK 499          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: A0A2W1JL88_9CYAN (Lysine--tRNA ligase n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JL88_9CYAN)

HSP 1 Score: 641 bits (1654), Expect = 2.760e-226
Identity = 329/496 (66.33%), Postives = 391/496 (78.83%), Query Frame = 1
Query:   46 ELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQ-------GRLGAEAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDDLAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKEK 1512
            +LRA R+ KV +MRAAG NPYAY W+ +HT   +Q Q+  LP GEE  + +V++AGRI+ RR+FGKLAFF L+D + T+Q+YL++       G +  EAF  LK  TDAGDI+G  GT+KRTDKGELSVYVS++ +LTKSLLPLPDKWHGL D  KRYRQR +D+IVNP VRETFR R++IT++ RR LD+ GF+EIETPVL S AGGA A+PF TYHN LD+ L LRIATELHLKRL+VGG E+V+E+GRIFRNEGIST+HNPEFT++EIYQAYADY DMM LTE L+TTA+Q  IG+ +++YQG  I L  PWRRV+M  +V +ATG DF    DL  A+AAA            SVG +LN  FE+  E+ L+QPTFVTDYP E+SPLAKPHR +PG  ERFELFIVGRETAN+FSELTD +DQRERLEAQAAKK AGD EA  VDEDFLTALEYGMPPT GLGIGIDRLVMLLTDS SIRDVIAFPLL+ +K
Sbjct:    4 DLRAARLEKVAQMRAAGHNPYAYRWESTHTAQVLQDQFRDLPNGEEKEV-EVAIAGRILTRRVFGKLAFFTLQDETTTIQLYLEKKRIQSVMGEVNPEAFNQLKQLTDAGDILGAKGTLKRTDKGELSVYVSEYEILTKSLLPLPDKWHGLTDIAKRYRQRYIDLIVNPTVRETFRRRAQITASFRRYLDEQGFIEIETPVLNSEAGGAEARPFVTYHNTLDMDLYLRIATELHLKRLIVGGFEKVFEMGRIFRNEGISTKHNPEFTTIEIYQAYADYSDMMTLTETLITTAAQSAIGSLKISYQGEAIDLTAPWRRVTMHEVVKEATGVDFAQIGDLKEAQAAAQKAGITGLEDCESVGHILNEAFEQKVEETLIQPTFVTDYPVEISPLAKPHRLQPGLVERFELFIVGRETANSFSELTDPIDQRERLEAQAAKKEAGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDSASIRDVIAFPLLKPDK 498          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: UPI001CCA4B88 (lysine--tRNA ligase n=1 Tax=Kovacikia minuta TaxID=2931930 RepID=UPI001CCA4B88)

HSP 1 Score: 641 bits (1654), Expect = 4.240e-226
Identity = 326/495 (65.86%), Postives = 394/495 (79.60%), Query Frame = 1
Query:   46 ELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRLGAE------AFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDDLAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKEK 1512
            E+RA R+AKVE+++ AG  PYAY W V+H  A++Q ++A L  GEE A+ +VS+AGRI+ARR+FGKLAFF L+D +GT+Q+YL++ R+         AF  LK  TD GDI+GV GT+KRT+KGELSVYV ++A+LTKSLLPLPDKWHGL D  KRYRQR +D+IVNPEVRETFR R+ IT+++RR LD  GF+EIETPVL++ AGGA A+PF TYHN L++ L LRIATELHLKRL+VGG E+V+ELGRIFRNEG+STRHNPEFT++E+YQAYADY DMM+LTE ++TTA+Q+ +GT  +TYQGT I L  PWRRV+M  LV + TG DF     LA AK AA            ++G +LN  FE+  E+ L+QPTFVTDYP E+SPLAKPHRSKPG  ERFELFIVGRETAN+FSELTD +DQR+RLEAQA +KAAGD EA  VDEDFLTALEYGMPPT GLGIGIDRLVMLLTD  SIRD IAFPLL+ EK
Sbjct:   18 EIRATRLAKVEQLKQAGQIPYAYRWDVTHHAADLQSKFAELANGEEVAM-EVSIAGRILARRVFGKLAFFNLQDETGTIQLYLEKARIEQSMAEMPNAFNHLKQLTDVGDILGVKGTIKRTEKGELSVYVKEYAVLTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRETFRRRALITASMRRYLDQQGFIEIETPVLQTEAGGAEARPFITYHNTLEMDLYLRIATELHLKRLIVGGFEKVFELGRIFRNEGVSTRHNPEFTTIEVYQAYADYNDMMQLTEAIITTAAQDVLGTLHITYQGTTIDLTPPWRRVTMHDLVQEKTGLDFSQFGTLAEAKQAAVDAGLEEVEKCETIGNLLNEAFEQKVEETLIQPTFVTDYPVEISPLAKPHRSKPGLVERFELFIVGRETANSFSELTDPIDQRQRLEAQADRKAAGDLEAHSVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDCASIRDAIAFPLLKPEK 511          
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Match: A0A654SDP1_9CYAN (Lysine--tRNA ligase n=1 Tax=Chrysosporum ovalisporum TaxID=75695 RepID=A0A654SDP1_9CYAN)

HSP 1 Score: 640 bits (1651), Expect = 8.460e-226
Identity = 325/496 (65.52%), Postives = 396/496 (79.84%), Query Frame = 1
Query:   46 ELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASLPTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRL-------GAEAFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKWHGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIETPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYELGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIGTTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDDLAAAKAAAXXXXXXXXXGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDVDEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKEK 1512
            ++RA R+ KV +++  G NPYAY W+ +H  AE+Q ++A LP+GE+  L  ++VAGRIMARR+FGKLAFF L+D +GT+Q+YL++  +         +AF  LK  TDAGDI+G  GT+KRT+KGELSVYV ++ +LTKSLLPLPDKWHGL D  KRYRQR +D+IVNPEVR+TFR R++IT+ +RR L +  FLEIETPVL+S AGGA A+PF TYHN L+++L LRIATELHLKRL+VGG E+V+ELGRIFRNEG+STRHNPEFTS+E+YQAYADY+DMM LTE ++TT +QE +GT ++ YQGTPI L+ PWRRV+M  LV + TG DF +   LA AKAA+            S+G++LN  FE+  E+ L+QPTFV DYP E+SPLAKPHRS PG  ERFELFIVGRET N+FSELTD VDQRERLEAQAA+KAAGD EA  VDEDFLTALEYGMPPT GLGIGIDRLVMLLTDSPSIRDVIAFPLL+ EK
Sbjct:    5 DIRATRLEKVNQLKQLGANPYAYRWESTHKTAELQAKFADLPSGEQIDL-DIAVAGRIMARRVFGKLAFFTLQDETGTIQLYLEKNHIQECMASVDTDAFTHLKQLTDAGDILGAKGTIKRTEKGELSVYVREYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLSERDFLEIETPVLQSEAGGADARPFITYHNTLEMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGVSTRHNPEFTSIEVYQAYADYQDMMALTEGIITTVTQEILGTLQIIYQGTPIDLSPPWRRVTMHDLVKEYTGLDFYSFTTLAEAKAASKNAGVQGIEDVQSIGKLLNEAFEQKVEEKLIQPTFVIDYPVEISPLAKPHRSHPGLVERFELFIVGRETGNSFSELTDPVDQRERLEAQAARKAAGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVIAFPLLKPEK 499          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1760.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z710_9STRA4.660e-26677.71Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
D7G3Y0_ECTSI1.590e-23969.57Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S4LKB1_9EUGL1.630e-23468.80Lysine--tRNA ligase n=1 Tax=Eutreptiella gymnastic... [more]
A0A6S9KNJ0_HETAK1.180e-23369.55Lysine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
UPI0016845CAC2.290e-22866.46lysine--tRNA ligase n=11 Tax=unclassified Coleofas... [more]
A0A8J7BLN2_9CYAN6.870e-22766.19Lysine--tRNA ligase n=3 Tax=unclassified Trichocol... [more]
A0A251WD19_9CYAN2.090e-22665.93Lysine--tRNA ligase n=2 Tax=unclassified Alkalinem... [more]
A0A2W1JL88_9CYAN2.760e-22666.33Lysine--tRNA ligase n=1 Tax=Acaryochloris thomasi ... [more]
UPI001CCA4B884.240e-22665.86lysine--tRNA ligase n=1 Tax=Kovacikia minuta TaxID... [more]
A0A654SDP1_9CYAN8.460e-22665.52Lysine--tRNA ligase n=1 Tax=Chrysosporum ovalispor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1760contigP-wetherbeei_contig1760:4444..6455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3Y0
Preferred nameMSK1
PFAMstRNA-synt_2,tRNA_anti-codon
Model size1542
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0000166,GO:0000959,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006403,GO:0006412,GO:0006418,GO:0006430,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0015931,GO:0016031,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035670,GO:0035927,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0051031,GO:0051179,GO:0051234,GO:0051236,GO:0055085,GO:0061458,GO:0070127,GO:0070154,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0099402,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990542
Exons2
Evalue2.07e-240
EggNOG OGsCOG1190@1|root,KOG1885@2759|Eukaryota
Ec32 ortholog descriptionLysyl-tRNA Synthetase
Ec32 orthologEc-19_000900.1
EC6.1.1.6
Descriptionlysyl-tRNA aminoacylation
Cds size1524
COG categoryJ
BiGG ReactioniMM904.YNL073W,iND750.YNL073W
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.104454-CDS-P-wetherbeei_contig1760:4443..51241683186121.104454-CDS-P-wetherbeei_contig1760:4443..5124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1760 4444..5124 -
1683186121.1168842-CDS-P-wetherbeei_contig1760:5594..64371683186121.1168842-CDS-P-wetherbeei_contig1760:5594..6437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1760 5595..6437 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.1265671-UTR-P-wetherbeei_contig1760:6437..64551683186121.1265671-UTR-P-wetherbeei_contig1760:6437..6455Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1760 6438..6455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1760.4.1prot_P-wetherbeei_contig1760.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1760 4444..6437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1760.4.1

>prot_P-wetherbeei_contig1760.4.1 ID=prot_P-wetherbeei_contig1760.4.1|Name=mRNA_P-wetherbeei_contig1760.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=508bp
MAEEEAPVAELRAVRIAKVEEMRAAGVNPYAYTWQVSHTCAEMQKQWASL
PTGEEDALAQVSVAGRIMARRIFGKLAFFALRDASGTVQMYLDQGRLGAE
AFGLLKTWTDAGDIVGVCGTVKRTDKGELSVYVSDWAMLTKSLLPLPDKW
HGLKDTEKRYRQRALDMIVNPEVRETFRLRSRITSTLRRLLDDAGFLEIE
TPVLESVAGGAVAKPFETYHNALDLKLTLRIATELHLKRLVVGGIERVYE
LGRIFRNEGISTRHNPEFTSVEIYQAYADYEDMMELTERLVTTASQECIG
TTELTYQGTPISLARPWRRVSMGALVNDATGFDFEACDDLAAAKAAAAAA
SVAEAAGAASVGEVLNICFEELCEQMLVQPTFVTDYPKEVSPLAKPHRSK
PGYTERFELFIVGRETANAFSELTDAVDQRERLEAQAAKKAAGDEEACDV
DEDFLTALEYGMPPTAGLGIGIDRLVMLLTDSPSIRDVIAFPLLRKEKPT
PAQAAAAA
back to top

mRNA from alignment at P-wetherbeei_contig1760:4444..6455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1760.4.1 ID=mRNA_P-wetherbeei_contig1760.4.1|Name=mRNA_P-wetherbeei_contig1760.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2012bp|location=Sequence derived from alignment at P-wetherbeei_contig1760:4444..6455- (Phaeothamnion wetherbeei SAG_119_79)
AAGCAAAAGGCGGGAGCAATGGCCGAAGAGGAGGCGCCCGTGGCTGAATT GAGGGCCGTACGCATCGCCAAGGTGGAGGAGATGCGGGCCGCTGGCGTGA ATCCGTACGCGTACACCTGGCAGGTCTCGCACACCTGCGCGGAGATGCAG AAACAATGGGCTAGCCTGCCGACAGGAGAGGAGGACGCCTTGGCGCAAGT CTCCGTTGCAGGGAGGATCATGGCGCGGCGCATCTTCGGCAAGCTGGCGT TCTTCGCGCTGCGGGACGCCTCGGGCACGGTGCAAATGTACCTCGACCAG GGGCGGCTGGGCGCGGAGGCCTTTGGGCTGCTCAAGACGTGGACGGACGC GGGCGACATTGTCGGCGTCTGCGGCACCGTCAAGCGCACCGACAAGGGCG AGCTGTCCGTCTACGTCTCCGACTGGGCGATGCTCACCAAGTCGCTTCTG CCGCTGCCGGACAAGTGGCACGGCCTCAAAGACACAGAGAAGCGCTACCG GCAACGCGCTCTAGACATGATTGTCAATCCCGAAGTCCGCGAGACCTTCC GCCTCCGCTCCCGCATCACCTCCACGCTCCGCCGCCTGCTCGACGACGCC GGCTTCCTCGAGATTGAGACGCCAGTCCTCGAGTCCGTCGCCGGTGGCGC CGTCGCGAAGCCCTTTGAGACGTACCACAACGCACTGGACCTCAAGCTGA CGCTGCGCATCGCGACGGAGCTGCACCTGAAGCGGCTGGTAGTGGGCGGC ATCGAGCGGGTCTACGAGCTGGGGCGCATCTTCCGCAACGAGGGCATCTC GACGCGCCACAACCCCGAATTTACCAGTGTCGAAATTTACCAAGCCTACG CCGACTACGAAGTGCGCTTTAAACAGGCTACGGGCTCCAGTTATTTGTTT TTCTAGGATGCAAAAGAGGAAAGTAAAGAGAAAATGTTGCTGTTCTCAAT GTGTTCAGGTGTGCAGTTGCGAAAACAAAGAGAGAAAGGAGGGAAGAACG ATTTTCTCAATGTTCAGAAAAGAGGAAGGGAGAAATATTTTGAAGCGGCG AGAAAGGATGTCCTGGAAGCTGTGTTTATTGCATCGTTCTGCAGCGAAAC TTTGCGCTTGAAAACTTTTCGAAGCCACGAATGGAGCTTGGCGCCAATTC GTGTGTGATCACCATCTGCTCGTCACCGTTCTCAAATTTCTGGCTTTTCT TTGTTCTGGCTCTGCGCCATAGCTTCGTCTCTTTCGTTCACCCGTTAGCC TGACGCCGGTCTCTGCCCCTTCATTCTCCCTTTCTCCCGAACCTACTGTC ATCTGTGCGCAACGCCGGAGGAAAATGACAGGATATGATGGAGCTGACGG AGCGGCTGGTGACGACGGCGTCCCAGGAGTGCATCGGCACCACGGAACTC ACCTACCAGGGCACACCAATCTCCCTCGCCCGCCCCTGGCGCCGCGTCTC CATGGGCGCCCTCGTCAACGATGCGACAGGCTTCGACTTTGAGGCCTGCG ACGACCTGGCGGCGGCCAAGGCGGCGGCAGCGGCGGCGAGCGTGGCAGAG GCGGCTGGCGCGGCATCTGTCGGGGAGGTGTTGAATATCTGTTTTGAGGA GCTCTGTGAGCAGATGCTCGTGCAGCCGACCTTTGTGACGGACTACCCGA AAGAAGTGTCGCCGCTCGCCAAGCCGCACCGCTCTAAACCGGGTTACACG GAGCGCTTCGAGCTCTTCATCGTCGGCCGCGAAACCGCCAACGCCTTTTC TGAATTGACGGACGCTGTTGATCAGCGGGAACGCCTCGAAGCGCAGGCTG CAAAAAAAGCGGCGGGCGACGAGGAAGCCTGCGACGTCGACGAGGACTTT TTGACGGCGCTGGAGTACGGCATGCCGCCGACCGCCGGTCTGGGCATCGG CATCGACCGGCTGGTGATGCTGCTGACGGACTCTCCGTCGATCCGGGATG TGATTGCCTTCCCGCTTCTGCGAAAGGAGAAGCCGACGCCAGCGCAGGCG GCGGCGGCGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1760:4444..6455-

>mRNA_P-wetherbeei_contig1760.4.1 ID=mRNA_P-wetherbeei_contig1760.4.1|Name=mRNA_P-wetherbeei_contig1760.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1524bp|location=Sequence derived from alignment at P-wetherbeei_contig1760:4444..6455- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAAGAGGAGGCGCCCGTGGCTGAATTGAGGGCCGTACGCATCGC
CAAGGTGGAGGAGATGCGGGCCGCTGGCGTGAATCCGTACGCGTACACCT
GGCAGGTCTCGCACACCTGCGCGGAGATGCAGAAACAATGGGCTAGCCTG
CCGACAGGAGAGGAGGACGCCTTGGCGCAAGTCTCCGTTGCAGGGAGGAT
CATGGCGCGGCGCATCTTCGGCAAGCTGGCGTTCTTCGCGCTGCGGGACG
CCTCGGGCACGGTGCAAATGTACCTCGACCAGGGGCGGCTGGGCGCGGAG
GCCTTTGGGCTGCTCAAGACGTGGACGGACGCGGGCGACATTGTCGGCGT
CTGCGGCACCGTCAAGCGCACCGACAAGGGCGAGCTGTCCGTCTACGTCT
CCGACTGGGCGATGCTCACCAAGTCGCTTCTGCCGCTGCCGGACAAGTGG
CACGGCCTCAAAGACACAGAGAAGCGCTACCGGCAACGCGCTCTAGACAT
GATTGTCAATCCCGAAGTCCGCGAGACCTTCCGCCTCCGCTCCCGCATCA
CCTCCACGCTCCGCCGCCTGCTCGACGACGCCGGCTTCCTCGAGATTGAG
ACGCCAGTCCTCGAGTCCGTCGCCGGTGGCGCCGTCGCGAAGCCCTTTGA
GACGTACCACAACGCACTGGACCTCAAGCTGACGCTGCGCATCGCGACGG
AGCTGCACCTGAAGCGGCTGGTAGTGGGCGGCATCGAGCGGGTCTACGAG
CTGGGGCGCATCTTCCGCAACGAGGGCATCTCGACGCGCCACAACCCCGA
ATTTACCAGTGTCGAAATTTACCAAGCCTACGCCGACTACGAAGATATGA
TGGAGCTGACGGAGCGGCTGGTGACGACGGCGTCCCAGGAGTGCATCGGC
ACCACGGAACTCACCTACCAGGGCACACCAATCTCCCTCGCCCGCCCCTG
GCGCCGCGTCTCCATGGGCGCCCTCGTCAACGATGCGACAGGCTTCGACT
TTGAGGCCTGCGACGACCTGGCGGCGGCCAAGGCGGCGGCAGCGGCGGCG
AGCGTGGCAGAGGCGGCTGGCGCGGCATCTGTCGGGGAGGTGTTGAATAT
CTGTTTTGAGGAGCTCTGTGAGCAGATGCTCGTGCAGCCGACCTTTGTGA
CGGACTACCCGAAAGAAGTGTCGCCGCTCGCCAAGCCGCACCGCTCTAAA
CCGGGTTACACGGAGCGCTTCGAGCTCTTCATCGTCGGCCGCGAAACCGC
CAACGCCTTTTCTGAATTGACGGACGCTGTTGATCAGCGGGAACGCCTCG
AAGCGCAGGCTGCAAAAAAAGCGGCGGGCGACGAGGAAGCCTGCGACGTC
GACGAGGACTTTTTGACGGCGCTGGAGTACGGCATGCCGCCGACCGCCGG
TCTGGGCATCGGCATCGACCGGCTGGTGATGCTGCTGACGGACTCTCCGT
CGATCCGGGATGTGATTGCCTTCCCGCTTCTGCGAAAGGAGAAGCCGACG
CCAGCGCAGGCGGCGGCGGCGGCG
back to top