mRNA_P-wetherbeei_contig17584.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17584.1.1
Unique NamemRNA_P-wetherbeei_contig17584.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17584.1.1 vs. uniprot
Match: A0A835ZHV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.370e-46
Identity = 84/144 (58.33%), Postives = 107/144 (74.31%), Query Frame = 1
Query:    1 SLENDLDAIDDLVMDRPPAVGRDKVKVFGAWLDSDVAGRKAAKGNRAAHLKAKAARGEELTNAEKGEARTQLVFYEEAIIFLDRGEYDVGAKLLDRAVGYVGEDSRRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGEKAFR 432
            +LE + D +DD+VMDRP   GRD+VK++GAWLD+D+AGR     N+AA LKAKAA GE LT+ EKGE     VFYEEAII++ +GEYD   +LL RAV +VGEDSRRGGEFKLWL  ALQGV  +D AV +L+ ++ H ++  R
Sbjct:   54 TLEEEFDELDDMVMDRPANKGRDQVKIWGAWLDADIAGRNVGSPNKAAALKAKAAAGEALTDREKGE-----VFYEEAIIYMGKGEYDTAQELLRRAVAFVGEDSRRGGEFKLWLAQALQGVLDNDGAVTLLRSMRTHPDRDVR 192          
BLAST of mRNA_P-wetherbeei_contig17584.1.1 vs. uniprot
Match: D7FPX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX2_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.090e-43
Identity = 85/138 (61.59%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 SLENDLDAIDDLVMDRPPAVGRDKVKVFGAWLDSDVAGRKAAKGNRAAHLKAKAARGEELTNAEKGEARTQLVFYEEAIIFLDRGEYDVGAKLLDRAVGYVGEDSRRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFH 414
            SLE  LDAIDD+ MDR P  GR+KVK+FGAWLD+DVAGRKA +GNRAA L A+   GEELT+ EK E     +FYEEAI  + R + D    LLD+AV   G DSRRGGEFKLW   ALQGV +++ AVEVLK LK H
Sbjct:   62 SLEESLDAIDDVFMDRLPGEGREKVKIFGAWLDADVAGRKAGQGNRAAGLIARMKNGEELTDQEKAE-----IFYEEAIALMRRRDCDASVALLDKAVDLAGADSRRGGEFKLWAAQALQGVNRNNQAVEVLKSLKSH 194          
BLAST of mRNA_P-wetherbeei_contig17584.1.1 vs. uniprot
Match: A0A7S2V7T9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7T9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.400e-29
Identity = 66/142 (46.48%), Postives = 96/142 (67.61%), Query Frame = 1
Query:   10 NDLDAIDDLVMDRPPAVGRD-KVKVFGAWLDSDVAGRKAAKGNRAAHLKAKAARGEELTNAEKGEARTQLVFYEEAIIFLDRGEYDVGAKLLDRAVGYVGEDSRRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGEKAFR 432
            ++LD IDDL M+R P    D +V+V+GAWLDSD+AGRK A  ++   L++K  +GE+L +AEK E     +F+EEA+ +++ G+YDV  KL+ RAV Y G DSRRGG+F+LWL   L    Q   A+++L+ LK H ++  R
Sbjct:   84 DELDVIDDLSMNRSPNDDGDGRVRVYGAWLDSDIAGRKVA--SKTKELRSKMNKGEQLEDAEKAE-----IFFEEAVGYMNSGKYDVSVKLIQRAVEYAGWDSRRGGQFELWLAQGLYAEGQIPDAIKLLRGLKVHRDRDVR 218          
BLAST of mRNA_P-wetherbeei_contig17584.1.1 vs. uniprot
Match: A0A6V1UNI6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UNI6_HETAK)

HSP 1 Score: 103 bits (258), Expect = 4.680e-24
Identity = 63/143 (44.06%), Postives = 87/143 (60.84%), Query Frame = 1
Query:    4 LENDLDAIDDLVMDRPPAVGRDKVKVFGAWLDSDVAGRKAAKGNRAAHLKAKAARGEELTNAEKGEARTQLVFYEEAIIFLDRGEYDVGAKLLDRAVGYVGEDSRRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGEKAFR 432
            LE +LD IDD+ M R   + RD+VKV+GAWLD+D+AGRKA    +   +KAK A GE L   E+GE     +F+EEA+  ++RG Y     L+++AV Y G +S RGG F+LWL  A+    + + A E LK L  H +   R
Sbjct:   82 LEKELDLIDDITMGRSE-MERDQVKVYGAWLDADIAGRKAGDNRK---IKAKLASGERLAPEERGE-----IFFEEAVKAMNRGRYAESVALIEQAVRYAGRESTRGGGFRLWLAQAVYAQGRREGAREGLKALGTHPDSNIR 215          
BLAST of mRNA_P-wetherbeei_contig17584.1.1 vs. uniprot
Match: A0A7S2BT75_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BT75_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.550e-16
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    4 LENDLDAIDDLVMDRPPAVGRDKVKVFGAWLDSDVAGRKAAKGNRAAHLKAKAARGEELTNAEKGEARTQLVFYEEAIIFLDRGEYDVGAKLLDRAVGYVG-EDSRRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFH 414
            +E ++D IDDL M+RP  +GRDKVK++G WLD+D+ GRKA K N+AA L          T+    +   + +F    +  +  GEY     L +RAVG VG   SRRGGE  LW   A+        A+ +LK L+ H
Sbjct:   13 VEEEMDRIDDLSMNRPANIGRDKVKMWGVWLDADLVGRKAGK-NQAAFL----------TDEVDDDTMAERIF-SVGVTQMKLGEYAAAGGLFNRAVGLVGGSSSRRGGEIALWEAQAVHANGDVAAALRLLKGLEQH 138          
BLAST of mRNA_P-wetherbeei_contig17584.1.1 vs. uniprot
Match: A0A2V3J3V9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3V9_9FLOR)

HSP 1 Score: 70.1 bits (170), Expect = 1.750e-11
Identity = 52/155 (33.55%), Postives = 76/155 (49.03%), Query Frame = 1
Query:    1 SLENDLDAIDDLVMDRPPAVGRDKVKVFGAWLDSDVAGRKAAKGNRAAHLKAKAARGEELTNAEKGEARTQLVFYEEAI-----IF------LDRGEYDVGAKLLDRAVGYVGEDSRRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGEKAFR 432
            SL +D+D +DD++ DR P    ++VK+FGAWLD  +AGRKA K         KA  G +  +A     +   V  EEA+     IF       ++G Y     L   A G VG  SR GG+++LW   +L       +A  +L+ L+ H +   R
Sbjct:   54 SLPDDIDQMDDILFDRAPN-NVNQVKLFGAWLDDALAGRKARKNLTPTD---KAVSGSDQADASVQSHKKASVSAEEAVEHSSAIFAKGMTMFNKGFYRQSTALFSEAAGIVGHGSRLGGQYQLWHAQSLDAAGDKRNAASLLESLRMHADPDVR 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17584.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835ZHV4_9STRA4.370e-4658.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FPX2_ECTSI2.090e-4361.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V7T9_9STRA3.400e-2946.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1UNI6_HETAK4.680e-2444.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BT75_9STRA1.550e-1639.86Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A2V3J3V9_9FLOR1.750e-1133.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17584contigP-wetherbeei_contig17584:755..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog102125.Xen7305DRAFT_00052750
PFAMsDUF3153,TPR_19
Model size435
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.38e-07
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G6IQ@1117|Cyanobacteria,3VK1W@52604|Pleurocapsales
DescriptionSPTR Alr1246 protein
Cds size435
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186120.5047798-CDS-P-wetherbeei_contig17584:754..9701683186120.5047798-CDS-P-wetherbeei_contig17584:754..970Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17584 755..970 +
1683186120.5164354-CDS-P-wetherbeei_contig17584:1200..14191683186120.5164354-CDS-P-wetherbeei_contig17584:1200..1419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17584 1201..1419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17584.1.1prot_P-wetherbeei_contig17584.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17584 755..1419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17584.1.1

>prot_P-wetherbeei_contig17584.1.1 ID=prot_P-wetherbeei_contig17584.1.1|Name=mRNA_P-wetherbeei_contig17584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
SLENDLDAIDDLVMDRPPAVGRDKVKVFGAWLDSDVAGRKAAKGNRAAHL
KAKAARGEELTNAEKGEARTQLVFYEEAIIFLDRGEYDVGAKLLDRAVGY
VGEDSRRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGEKAFR*
back to top

mRNA from alignment at P-wetherbeei_contig17584:755..1419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17584.1.1 ID=mRNA_P-wetherbeei_contig17584.1.1|Name=mRNA_P-wetherbeei_contig17584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=665bp|location=Sequence derived from alignment at P-wetherbeei_contig17584:755..1419+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTTGGAAAACGATCTTGATGCGATCGATGACTTGGTGATGGATAGGCC ACCAGCCGTCGGCCGCGACAAAGTGAAGGTATTCGGTGCATGGCTCGACT CCGACGTCGCAGGAAGAAAGGCGGCAAAAGGGAACCGCGCGGCGCATCTT AAGGCAAAGGCGGCGCGCGGAGAGGAGCTGACAAATGCGGAGAAGGGAGA GGCGAGAACCCAGCTGGTCTACGATAGTTGGGGATTGGTTGCAAAGGGCA CGACAAAATGGCCATCAAGGGATTGTTTTTCCAGAGCTCTTGAGATGTCC ACATAACAAGTCCGGCCCTGCCCGCTCTCACCATGAGGAGGCTGTTTGAA TGTGTAACTTTCGGAGCTTTCCGTCCTCGTAACCTCTTTCGCCGCACCGA AACCCTCTAGTCCACCAGCGTCAACCGCCACGCCTCCCCACCACAGGTCT TTTACGAGGAGGCCATCATCTTCCTGGATCGCGGCGAATATGATGTCGGC GCCAAGCTGTTGGACCGTGCCGTCGGCTACGTCGGCGAGGACAGCCGCCG CGGCGGCGAGTTCAAGCTGTGGCTCGTGACGGCGCTGCAGGGTGTGCGGC AGGATGACCACGCCGTCGAGGTGCTGAAGCGGCTAAAGTTCCACGGCGAA AAGGCTTTCCGCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17584:755..1419+

>mRNA_P-wetherbeei_contig17584.1.1 ID=mRNA_P-wetherbeei_contig17584.1.1|Name=mRNA_P-wetherbeei_contig17584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig17584:755..1419+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTTGGAAAACGATCTTGATGCGATCGATGACTTGGTGATGGATAGGCC
ACCAGCCGTCGGCCGCGACAAAGTGAAGGTATTCGGTGCATGGCTCGACT
CCGACGTCGCAGGAAGAAAGGCGGCAAAAGGGAACCGCGCGGCGCATCTT
AAGGCAAAGGCGGCGCGCGGAGAGGAGCTGACAAATGCGGAGAAGGGAGA
GGCGAGAACCCAGCTGGTCTTTTACGAGGAGGCCATCATCTTCCTGGATC
GCGGCGAATATGATGTCGGCGCCAAGCTGTTGGACCGTGCCGTCGGCTAC
GTCGGCGAGGACAGCCGCCGCGGCGGCGAGTTCAAGCTGTGGCTCGTGAC
GGCGCTGCAGGGTGTGCGGCAGGATGACCACGCCGTCGAGGTGCTGAAGC
GGCTAAAGTTCCACGGCGAAAAGGCTTTCCGCTAG
back to top