mRNA_P-wetherbeei_contig17570.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: Q60CM0_METCA (Type 4 fimbrial biogenesis protein PilE n=4 Tax=Methylococcus TaxID=413 RepID=Q60CM0_METCA) HSP 1 Score: 104 bits (260), Expect = 8.680e-26 Identity = 58/151 (38.41%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 10 KQAMTGARFSRGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAV--CWS 456
K ++T AR + GF+L+ELMI V I+GI++++A+P+YK ++ R +R++GKA L+ A R+E+Y+ DN +Y +D T LG+A S KSD+G+Y ++ +D + + LQ P D CG LTL+S G + +V CW+
Sbjct: 7 KVSITPARRAAEGRGFSLLELMITVAIIGILATVAYPSYKEHIVRTRRADGKAALLRAAAREEQYFMDNKTYTSDVTRLGFA-SNGKSDEGHYVISVTAADAN------GFTLQATPQSPHTDALCGN-LTLNSLGVKGKSGSGSVADCWN 149
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A858Q5D0_9GAMM (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Methylococcus geothermalis TaxID=2681310 RepID=A0A858Q5D0_9GAMM) HSP 1 Score: 104 bits (259), Expect = 1.530e-25 Identity = 60/146 (41.10%), Postives = 92/146 (63.01%), Query Frame = 1
Query: 25 GARFSRGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAV--CWS 456
GAR R + GFTL+ELMI V I+GI+++IA+P+YK +V R +R++GKA L+ A R+E Y+ DN +Y +D T+LG+A + KSD+G+Y ++ +D +T + LQ P D CG LTL++ G + +V CW+
Sbjct: 21 GAR-GRSRRGFTLIELMITVAIIGILAAIAYPSYKEHVIRTRRADGKAALLRAAAREELYFMDNKTYTSDVTKLGFAANG-KSDEGHYVISVTAADANT------FALQAAPQSPHTDALCGN-LTLNALGVKGQSGSGSVADCWN 157
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A2A2IVB8_9PSED (Pilus assembly protein PilE n=2 Tax=Pseudomonas sp. HAR-UPW-AIA-41 TaxID=1985301 RepID=A0A2A2IVB8_9PSED) HSP 1 Score: 102 bits (255), Expect = 3.440e-25 Identity = 68/148 (45.95%), Postives = 90/148 (60.81%), Query Frame = 1
Query: 19 MTGARFSRGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDT-CGEFLTLDSKGAQ-DSDSGD-AVCW 453
M + F R GFTL+ELMIVV I+GI+S+IA+P+Y+ YV R RSEG+AFL + A RQERYY NN+YA A +LGYA + S + A++N + T+Y L T P D+ CG LTL+ G + +S SG A CW
Sbjct: 1 MHSSPFKRHMAGFTLIELMIVVAIIGIISAIAYPSYQEYVLRGNRSEGQAFLNDAAARQERYYAQNNTYADTAAKLGYANNNSSSSKYTLAISNVSA--------TTYTL---TATPAQTDSKCGN-LTLNQAGTKGESGSGTLADCW 136
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: UPI0018E063ED (prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Methylococcus sp. BF19-07 TaxID=2743472 RepID=UPI0018E063ED) HSP 1 Score: 101 bits (252), Expect = 1.320e-24 Identity = 56/140 (40.00%), Postives = 87/140 (62.14%), Query Frame = 1
Query: 43 GQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAV--CWS 456
G GF+LMELMI V I+GI+++IA+P+Y+ ++ R +R++GKA L+ A R+E+Y+ DN +Y +D T LG+A S KSD+G+Y ++ +D + + LQ P D CG LTL+S G + +V CW+
Sbjct: 16 GGGGFSLMELMITVAIIGILAAIAYPSYQEHLVRTRRADGKAALLRAAAREEQYFLDNKTYTSDVTRLGFA-SNGKSDEGHYVISVTAADAN------GFTLQATPQSPHTDARCGN-LTLNSVGVKGKSGSGSVADCWN 147
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A4XQV9_PSEMY (Tfp pilus assembly protein PilE-like protein n=1 Tax=Pseudomonas mendocina (strain ymp) TaxID=399739 RepID=A4XQV9_PSEMY) HSP 1 Score: 100 bits (250), Expect = 2.180e-24 Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 46 QYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYAT--STPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQD---SDSGDAVCW 453
Q GFTL+E+MIV+V++GI++SIA+P+Y YV R RSEG+AFL ++A RQERY+ NN+Y + ++G + KS+ G Y L D D G T+ + ++D TCG LTL+++G + SD A CW
Sbjct: 8 QQGFTLIEVMIVIVVIGILASIAYPSYSEYVKRGNRSEGQAFLNDVAARQERYFSQNNAYVTNNADIGNLALKNGNKSETGKYELVLSKVDNDGGYTLTAE-------EQFNDTTCGN-LTLNARGVRGRTGSDMSAADCW 140
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A2G6EG45_9GAMM (Pilus assembly protein PilE n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6EG45_9GAMM) HSP 1 Score: 97.8 bits (242), Expect = 6.400e-23 Identity = 60/140 (42.86%), Postives = 87/140 (62.14%), Query Frame = 1
Query: 52 GFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYA-TSTPKSDQGNY--ALTNPVSDGDTGSITTSYVLQINTV--DPWHDDT-CGEFLTLDSKGAQDSDSGDAVCW 453
GFTL+E++IVV I+GI++++A P Y AYV+R R++ FLME+AG QERY+ +NN++A + ELGY +T K+ +G Y ++ NP TTS+ L V P +DT CG F TL S GA+ + + CW
Sbjct: 34 GFTLIEVLIVVAIIGILAAVATPIYSAYVERTYRTDAIGFLMEVAGEQERYFTENNTFATEMKELGYGKAATFKTPEGYYTVSIANPT--------TTSFKLTATPVADGPQANDTDCGSF-TLTSTGARGNSGSGSDCW 164
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A7Y2I8F7_9GAMM (Type IV pilin protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2I8F7_9GAMM) HSP 1 Score: 97.1 bits (240), Expect = 6.780e-23 Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 1
Query: 52 GFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPK--SDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLT--LDSKGAQDSDSGDAVCWSK 459
G TL+ELM+V+VIVGI++S+A+P Y+ +V RAKRSE +A L+ LA QER+Y +NN++ AD T LG+A STPK ++ G Y + +D S T +Y LQ + G+ LT +D +GA+ S D CW +
Sbjct: 9 GITLVELMVVIVIVGILASVAYPNYQEFVARAKRSEARAALLRLATNQERFYLNNNTFTADLTSLGFA-STPKVETETGYYEIEVTSADASNFSATATY-LQGGS-------EAGKCLTYTIDGRGAKSS-GPDTNCWER 138
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: Q0HS90_SHESR (Methylation site containing protein n=1 Tax=Shewanella sp. (strain MR-7) TaxID=60481 RepID=Q0HS90_SHESR) HSP 1 Score: 96.7 bits (239), Expect = 7.930e-23 Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 1
Query: 46 QYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAVCW 453
Q GFTL+E+MI VVI+GI++SIA+P+Y Y+ R+ RSEG A +M +A QE+YY DN +YA D T+LG + + ++ G+Y+L + VS G T+ +Q + D C + +T+ S GA+ CW
Sbjct: 6 QKGFTLIEVMITVVIIGILASIAYPSYTNYITRSARSEGVAAVMRVANLQEQYYLDNRAYATDMTKLGLSANPFVTEHGHYSLASAVSSGTLTITATALGVQYS-----RDSVC-KTITMTSAGAK---GPSPECW 132
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: W8QUN0_PSEST (Pilus assembly protein PilE n=1 Tax=Pseudomonas stutzeri TaxID=316 RepID=W8QUN0_PSEST) HSP 1 Score: 96.7 bits (239), Expect = 9.850e-23 Identity = 65/146 (44.52%), Postives = 84/146 (57.53%), Query Frame = 1
Query: 40 RGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSY---AADATELGYATSTPK---SDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDA--VCW 453
R Q GFTL+E+MIVV I+GI+++IA+P+Y+ YV R R+EG+A L E A RQERY+ NN Y AAD +L +ST SD G Y LT DGD G T S Q + D CG LTL++ G + + A CW
Sbjct: 3 RDQSGFTLIEIMIVVAIIGILAAIAYPSYQEYVLRGNRTEGQALLSEAAARQERYFAQNNRYITDAADVAKLNLRSSTSSGVTSDTGKYTLTVGAEDGD-GGYTLSADQQFS------DTACGN-LTLNAVGIKGNTGSRAWSECW 140
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A2A5CSN8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A5CSN8_9GAMM) HSP 1 Score: 95.5 bits (236), Expect = 3.270e-22 Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 46 QYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQ---INTVDPWHDDTCGEFLTLDSKGAQDSDSGDAVCW 453
Q GFTL+ELMIVVVIVG++ +IA PAY+ V + KRS+ A LM+ RQE++ D N+Y D T+LG+A S + +Y + G TGSI TSY L + T DD C F+ + + + + CW
Sbjct: 9 QKGFTLLELMIVVVIVGVLMAIALPAYQDSVRKGKRSDAMAALMDAVNRQEQFMLDRNTYTLDMTDLGFAADPLVSTELHYTI--DAVAGTTGSIATSYTLTATPVGTSTQADDDRCTSFIITSNGIKTATGTNNTQCW 145 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17570.2.1 >prot_P-wetherbeei_contig17570.2.1 ID=prot_P-wetherbeei_contig17570.2.1|Name=mRNA_P-wetherbeei_contig17570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp MTNKQAMTGARFSRGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKback to top mRNA from alignment at P-wetherbeei_contig17570:707..1168- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17570.2.1 ID=mRNA_P-wetherbeei_contig17570.2.1|Name=mRNA_P-wetherbeei_contig17570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig17570:707..1168- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17570:707..1168- >mRNA_P-wetherbeei_contig17570.2.1 ID=mRNA_P-wetherbeei_contig17570.2.1|Name=mRNA_P-wetherbeei_contig17570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig17570:707..1168- (Phaeothamnion wetherbeei SAG_119_79)back to top |