mRNA_P-wetherbeei_contig17554.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17554.2.1
Unique NamemRNA_P-wetherbeei_contig17554.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A7S3UWE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWE7_HETAK)

HSP 1 Score: 102 bits (254), Expect = 1.610e-24
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMIGD 198
            F+I +D A+PGQ+R+ G KIE AAAMT+WDYYEAV RF+RIM+AMG++A LE RGAE+GDL+MIGD
Sbjct:  269 FEIETDPAYPGQFRITGRKIENAAAMTNWDYYEAVDRFKRIMDAMGVTAALEERGAEEGDLIMIGD 334          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A482UT48_9ARCH (DUF1967 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UT48_9ARCH)

HSP 1 Score: 95.1 bits (235), Expect = 1.480e-23
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMIGD 198
            F++++DA FPGQ+R+VG +IER  AMT+WDYYEA  RF RI+EA GIS  LE +GA+QGDL+MIG+
Sbjct:   75 FEVITDARFPGQYRIVGKQIERIVAMTNWDYYEASQRFVRIIEAQGISDALEAKGAQQGDLIMIGE 140          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A835YRC8_9STRA (GTP1/OBG-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.450e-22
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMI 192
            F ILSD A+PGQWRV G +IER A MT+WDYYEA+ RFQRIM+AMG++ EL   GA++GDL+MI
Sbjct:  399 FQILSDPAYPGQWRVAGTRIERTARMTNWDYYEAIVRFQRIMDAMGVNQELLSAGAKKGDLIMI 462          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: I2CRT0_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRT0_NANGC)

HSP 1 Score: 93.6 bits (231), Expect = 2.240e-21
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMIGD 198
            + I++D  FPGQ+RV G +IE+  AMT+WDYYEAV RFQRI+EA GI+  L++RGA++GDL+MIGD
Sbjct:  223 YQIITDPKFPGQFRVQGKQIEKICAMTNWDYYEAVERFQRILEATGIAKALKKRGAQEGDLIMIGD 288          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A7S2XZJ3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZJ3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.820e-21
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMIGD 198
            F I +D  FPGQ+RV G +IER AAMT+W+YYEAV RF+RIM+AM I+  LE+RGA +GDL+MI D
Sbjct:   54 FKIETDPDFPGQFRVRGARIERVAAMTNWEYYEAVERFKRIMDAMKITKALEKRGAVEGDLIMIND 119          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A7S2HKG6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HKG6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.730e-20
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMI 192
            FDI+SD A+PGQWR+ G  IE+ A MT W+Y EA+ RF R +EA+GISAELERRGA  GDL+MI
Sbjct:  232 FDIMSDPAYPGQWRISGNYIEQVAKMTHWEYPEAIERFGRQLEALGISAELERRGAVDGDLIMI 295          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A7S4V9E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V9E8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.950e-20
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    4 DILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMI 192
            +I+SD A+PGQWR+ G  IE+ A MT W+Y EA+ RF R +EA+GI+AELERRGA  GDL+MI
Sbjct:   36 EIISDPAYPGQWRIKGEYIEQVAKMTHWEYPEAIERFGRQLEALGIAAELERRGAIDGDLIMI 98          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A7S4RIV5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RIV5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.210e-19
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMI 192
            F+I+SD A+PGQWR+ G  IE+ A MT W+Y EA+ RF R +EA+GI+AELERRGA  GDL+MI
Sbjct:  242 FEIISDPAYPGQWRIKGEYIEQVAKMTHWEYPEAIERFGRQLEALGIAAELERRGAIDGDLIMI 305          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A7S2LP58_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LP58_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.600e-19
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMI 192
            F+I+SD A+PGQWR+ G  IE+ A MT W+Y EAV RF R +EA+GISAEL  RGA++GDL+MI
Sbjct:  199 FEIISDPAYPGQWRISGNYIEQVATMTHWEYPEAVERFGRQLEALGISAELNARGAQEGDLIMI 262          
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Match: A0A1Z5JWU6_FISSO (GTPase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWU6_FISSO)

HSP 1 Score: 89.0 bits (219), Expect = 4.020e-19
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAELERRGAEQGDLVMI 192
            ++I+SD A+PGQWR+ G  IE+ A MT W+Y EAV RF R +EA+GIS+EL RRGAE GDL+MI
Sbjct:  442 YEIISDPAYPGQWRISGQHIEQIAKMTHWEYPEAVERFGRQLEALGISSELSRRGAEDGDLIMI 505          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17554.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UWE7_HETAK1.610e-2469.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482UT48_9ARCH1.480e-2363.64DUF1967 domain-containing protein n=1 Tax=archaeon... [more]
A0A835YRC8_9STRA2.450e-2267.19GTP1/OBG-domain-containing protein n=1 Tax=Tribone... [more]
I2CRT0_NANGC2.240e-2162.12Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2XZJ3_9STRA3.820e-2163.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2HKG6_9STRA3.730e-2065.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4V9E8_9STRA3.950e-2061.90Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4RIV5_9STRA2.210e-1962.50Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2LP58_9STRA2.600e-1962.50Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JWU6_FISSO4.020e-1962.50GTPase n=2 Tax=Fistulifera solaris TaxID=1519565 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17554contigP-wetherbeei_contig17554:1220..1417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatrdraft1331
PFAMsDUF1967,GTP1_OBG,MMR_HSR1
Model size198
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-19
EggNOG OGsCOG0536@1|root,KOG1489@2759|Eukaryota,2XC3E@2836|Bacillariophyta
Description50S ribosome-binding GTPase
Cds size198
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186119.9288087-CDS-P-wetherbeei_contig17554:1219..14171683186119.9288087-CDS-P-wetherbeei_contig17554:1219..1417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17554 1220..1417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17554.2.1prot_P-wetherbeei_contig17554.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17554 1220..1417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17554.2.1

>prot_P-wetherbeei_contig17554.2.1 ID=prot_P-wetherbeei_contig17554.2.1|Name=mRNA_P-wetherbeei_contig17554.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
FDILSDAAFPGQWRVVGPKIERAAAMTSWDYYEAVARFQRIMEAMGISAE
LERRGAEQGDLVMIGD
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mRNA from alignment at P-wetherbeei_contig17554:1220..1417-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17554.2.1 ID=mRNA_P-wetherbeei_contig17554.2.1|Name=mRNA_P-wetherbeei_contig17554.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig17554:1220..1417- (Phaeothamnion wetherbeei SAG_119_79)
TTCGACATTTTGAGCGACGCGGCCTTCCCCGGGCAGTGGCGCGTGGTGGG GCCGAAAATTGAGCGCGCGGCGGCCATGACCAGCTGGGACTATTACGAAG CCGTGGCGCGCTTCCAGCGCATTATGGAGGCGATGGGCATTAGCGCAGAG CTGGAGCGGCGCGGCGCCGAGCAGGGCGACCTCGTGATGATCGGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17554:1220..1417-

>mRNA_P-wetherbeei_contig17554.2.1 ID=mRNA_P-wetherbeei_contig17554.2.1|Name=mRNA_P-wetherbeei_contig17554.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig17554:1220..1417- (Phaeothamnion wetherbeei SAG_119_79)
TTCGACATTTTGAGCGACGCGGCCTTCCCCGGGCAGTGGCGCGTGGTGGG
GCCGAAAATTGAGCGCGCGGCGGCCATGACCAGCTGGGACTATTACGAAG
CCGTGGCGCGCTTCCAGCGCATTATGGAGGCGATGGGCATTAGCGCAGAG
CTGGAGCGGCGCGGCGCCGAGCAGGGCGACCTCGTGATGATCGGCGAT
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