mRNA_P-wetherbeei_contig17540.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17540.2.1
Unique NamemRNA_P-wetherbeei_contig17540.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17540.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17540contigP-wetherbeei_contig17540:192..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1228
Hectar predicted targeting categoryother localisation
Exons1
Cds size990
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186119.448764-UTR-P-wetherbeei_contig17540:191..3271683186119.448764-UTR-P-wetherbeei_contig17540:191..327Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17540 192..327 +
1683186119.4683495-UTR-P-wetherbeei_contig17540:1317..14191683186119.4683495-UTR-P-wetherbeei_contig17540:1317..1419Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17540 1318..1419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186119.4588816-CDS-P-wetherbeei_contig17540:327..13171683186119.4588816-CDS-P-wetherbeei_contig17540:327..1317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17540 328..1317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17540.2.1prot_P-wetherbeei_contig17540.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17540 328..1317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17540.2.1

>prot_P-wetherbeei_contig17540.2.1 ID=prot_P-wetherbeei_contig17540.2.1|Name=mRNA_P-wetherbeei_contig17540.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
MASEFQLSFQPNHEGSDEEYTGGTRDVKLRGDSTIILRPGGAGSKSHHVA
EDSPETPEKKWAPDDGGGGGGGGGGGGGGGGGGGRTDGLAGSTGDVTEQA
DVRNRARRGPEPSSAARELGLEGRRSGVVSHGGFGGADARRRDGGADGNR
TSSTPVADFYNGGWGGPTFLFFAAILWIPSLAVLVHSQNNKDDDSIRKAL
VTFLAQGVAAALTVLKLMTSNRKLSVKNAETYTNMLVVVWFIALAFNILV
AVAYDRTEPGGSTDAFILLISLATLLNGGFVSTYTALCDTNHGRPSAAAK
SGGAQVILADGRSGGDGGGATDEEGAAAY*
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mRNA from alignment at P-wetherbeei_contig17540:192..1419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17540.2.1 ID=mRNA_P-wetherbeei_contig17540.2.1|Name=mRNA_P-wetherbeei_contig17540.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1228bp|location=Sequence derived from alignment at P-wetherbeei_contig17540:192..1419+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGTTTTGGAGGCCAAGTTGTTTACGATGGTATCGATTGTCTCTTCTCG
AAGATAGGGATCATTTTACGCGGCTCCTCGAAACGGGAAGTTTGCCGACG
TTCCCGGAGAAGACAGTCAGATACCAACTGACGAGAATGGCCTCTGAATT
TCAGCTGTCTTTTCAACCCAATCACGAGGGCTCTGACGAGGAGTACACCG
GCGGAACAAGAGATGTTAAACTGCGTGGCGATTCAACCATTATACTGAGG
CCAGGAGGAGCAGGCAGCAAGTCGCACCACGTGGCGGAAGATTCGCCTGA
AACGCCTGAAAAAAAATGGGCACCTGACGACGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTCGCACGGATGGG
CTTGCAGGTAGCACCGGCGATGTGACAGAACAGGCAGATGTTCGCAACCG
TGCGAGGCGAGGACCAGAGCCATCGTCCGCAGCTCGAGAGCTCGGATTGG
AAGGCAGGAGGAGCGGTGTCGTGAGTCATGGCGGCTTTGGCGGCGCCGAC
GCTCGGCGCCGCGATGGTGGGGCCGACGGGAACCGCACATCCTCCACTCC
AGTTGCCGACTTTTACAATGGCGGTTGGGGCGGGCCTACTTTTCTATTCT
TCGCTGCCATCCTCTGGATTCCTAGCCTCGCAGTGCTAGTACACTCGCAA
AACAACAAAGATGATGACTCCATCCGAAAGGCCCTTGTGACTTTTCTTGC
CCAAGGCGTCGCTGCCGCCCTTACCGTGTTGAAGCTGATGACCAGCAACC
GCAAGCTTTCCGTGAAGAACGCGGAGACTTACACCAACATGCTTGTTGTG
GTCTGGTTCATCGCCCTTGCGTTCAACATCTTGGTTGCAGTCGCATATGA
TCGCACGGAGCCGGGAGGGTCGACAGACGCCTTCATTCTGCTCATCTCGC
TGGCGACGCTGCTGAACGGAGGCTTCGTCAGTACGTACACCGCTTTGTGC
GACACCAACCACGGGAGGCCGTCAGCCGCCGCCAAGAGCGGCGGAGCGCA
GGTGATATTGGCGGACGGCCGCAGCGGCGGCGACGGCGGCGGTGCCACCG
ATGAGGAAGGCGCAGCAGCGTACTAGAATTGACCCTTGACTGGAGGCAGG
CGGTGGGTGAGGGAAAGTGGGTTGTCTGTCGAAACAAAACCGTTGGATGG
GTTTATTTTGGTGGCCCTGTGGTGGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17540:192..1419+

>mRNA_P-wetherbeei_contig17540.2.1 ID=mRNA_P-wetherbeei_contig17540.2.1|Name=mRNA_P-wetherbeei_contig17540.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig17540:192..1419+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTCTGAATTTCAGCTGTCTTTTCAACCCAATCACGAGGGCTCTGA
CGAGGAGTACACCGGCGGAACAAGAGATGTTAAACTGCGTGGCGATTCAA
CCATTATACTGAGGCCAGGAGGAGCAGGCAGCAAGTCGCACCACGTGGCG
GAAGATTCGCCTGAAACGCCTGAAAAAAAATGGGCACCTGACGACGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GTCGCACGGATGGGCTTGCAGGTAGCACCGGCGATGTGACAGAACAGGCA
GATGTTCGCAACCGTGCGAGGCGAGGACCAGAGCCATCGTCCGCAGCTCG
AGAGCTCGGATTGGAAGGCAGGAGGAGCGGTGTCGTGAGTCATGGCGGCT
TTGGCGGCGCCGACGCTCGGCGCCGCGATGGTGGGGCCGACGGGAACCGC
ACATCCTCCACTCCAGTTGCCGACTTTTACAATGGCGGTTGGGGCGGGCC
TACTTTTCTATTCTTCGCTGCCATCCTCTGGATTCCTAGCCTCGCAGTGC
TAGTACACTCGCAAAACAACAAAGATGATGACTCCATCCGAAAGGCCCTT
GTGACTTTTCTTGCCCAAGGCGTCGCTGCCGCCCTTACCGTGTTGAAGCT
GATGACCAGCAACCGCAAGCTTTCCGTGAAGAACGCGGAGACTTACACCA
ACATGCTTGTTGTGGTCTGGTTCATCGCCCTTGCGTTCAACATCTTGGTT
GCAGTCGCATATGATCGCACGGAGCCGGGAGGGTCGACAGACGCCTTCAT
TCTGCTCATCTCGCTGGCGACGCTGCTGAACGGAGGCTTCGTCAGTACGT
ACACCGCTTTGTGCGACACCAACCACGGGAGGCCGTCAGCCGCCGCCAAG
AGCGGCGGAGCGCAGGTGATATTGGCGGACGGCCGCAGCGGCGGCGACGG
CGGCGGTGCCACCGATGAGGAAGGCGCAGCAGCGTACTAG
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