mRNA_P-wetherbeei_contig17519.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17519.1.1
Unique NamemRNA_P-wetherbeei_contig17519.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A3UEJ0_9PROT (NAD-dependent epimerase/dehydratase family protein n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UEJ0_9PROT)

HSP 1 Score: 112 bits (279), Expect = 6.630e-28
Identity = 59/90 (65.56%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    7 VLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            VLVTGAAGFIG  VA+ LL RGE VVG DN++ YYD  LKEARAAELS+H  F MVRGD+A      A +    V R+VHLAAQAGVRYS
Sbjct:    5 VLVTGAAGFIGMHVAQRLLERGERVVGVDNYNDYYDPGLKEARAAELSQHTAFEMVRGDIADHAMIGALVKQHGVKRIVHLAAQAGVRYS 94
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A3N1KY38_9PROT (UDP-glucuronate 4-epimerase n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1KY38_9PROT)

HSP 1 Score: 110 bits (276), Expect = 1.860e-27
Identity = 62/93 (66.67%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAIS-DPAVDRVVHLAAQAGVRYS 276
            MTVLVTGAAGFIGF VA ALL RGE VVG D+FDPYYDV LKEAR   L+    F MVRGD+A        ++  P VDR+VHLAAQAGVRYS
Sbjct:    1 MTVLVTGAAGFIGFHVAGALLRRGERVVGVDSFDPYYDVGLKEARLGLLAPQPGFTMVRGDLAEPATLDQVLAAHPGVDRIVHLAAQAGVRYS 93
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A2A4IAC6_9SPHN (Protein CapI n=3 Tax=Sphingomonas TaxID=13687 RepID=A0A2A4IAC6_9SPHN)

HSP 1 Score: 108 bits (270), Expect = 1.370e-26
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            MT+LVTGAAGFIG +VA  LL RG++V+G DNF+ YYD  LKEARAA  +     RMVRGD+A     AA + D  V R+VHLAAQAGVRYS
Sbjct:    1 MTILVTGAAGFIGHAVAHRLLDRGDSVIGIDNFNDYYDPALKEARAASFADRPAMRMVRGDIADADLVAALVRDHGVKRIVHLAAQAGVRYS 92
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A840HT74_9SPHN (UDP-glucuronate 4-epimerase n=1 Tax=Rhizorhapis suberifaciens TaxID=13656 RepID=A0A840HT74_9SPHN)

HSP 1 Score: 108 bits (270), Expect = 1.460e-26
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            MT++VTGAAGFIG +VA  LL RGE V+G DNF+ YYD  LKEARAA L +   FRM R D+A     AA + D AV R+VHLAAQAGVRYS
Sbjct:    1 MTIIVTGAAGFIGHAVAHRLLDRGETVIGVDNFNDYYDPSLKEARAATLEQRSGFRMERMDIADAPAMAALVRDNAVRRIVHLAAQAGVRYS 92
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A1G3V727_9DELT (Capsular biosynthesis protein CpsI n=1 Tax=Syntrophus sp. GWC2_56_31 TaxID=1802291 RepID=A0A1G3V727_9DELT)

HSP 1 Score: 108 bits (270), Expect = 1.690e-26
Identity = 58/90 (64.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    7 VLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            +LVTGAAGFIGF +AR LL +GE VVG DN +PYYDV LKEAR A L ++G FR VR DVA     AA       D VVHLAAQAGVRYS
Sbjct:    4 ILVTGAAGFIGFHLARRLLQKGETVVGLDNLNPYYDVTLKEARLALLEKNGAFRFVRADVADRKAMAALFESERFDIVVHLAAQAGVRYS 93
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A3C1C343_9BACT (NAD(P)-bd_dom domain-containing protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3C1C343_9BACT)

HSP 1 Score: 103 bits (258), Expect = 1.910e-26
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            M +LVTGAAGFIG+ VA+ALLARG++VVGFDN + YYDV LKEAR A+L  +  F  V+G +       A  S    DRV+HLAAQAGVRYS
Sbjct:    1 MNILVTGAAGFIGYHVAKALLARGDSVVGFDNVNDYYDVSLKEARLAQLLPNPAFTFVKGSLEDAAAMNALFSGRPFDRVIHLAAQAGVRYS 92
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A541BYB6_9PROT (NAD-dependent epimerase/dehydratase family protein n=2 Tax=Elioraea TaxID=457933 RepID=A0A541BYB6_9PROT)

HSP 1 Score: 108 bits (269), Expect = 2.190e-26
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVAS-EGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            MT+LVTGAAGFIGF +ARALLARGE V+GFD+ + YYD  LKEAR A L +   F MVRGD+A  +     A + P +DR+VHLAAQAGVRY+
Sbjct:    1 MTILVTGAAGFIGFHLARALLARGERVIGFDSVNAYYDPTLKEARLAVLGQDPGFAMVRGDLADRDAVLGLAEAHPTIDRIVHLAAQAGVRYA 93
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A848W0Z4_9PROT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W0Z4_9PROT)

HSP 1 Score: 107 bits (267), Expect = 3.710e-26
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            MT+L+TGAAGFIG  VA+ALLARGE+VVG DN + YYDV LKEAR A L  H  FR+ R D+A +G          VDR++HLAAQAGVRYS
Sbjct:    1 MTILLTGAAGFIGMHVAQALLARGESVVGVDNVNDYYDVALKEARLARLGEHAAFRLERIDIADQGALTPLAGG--VDRIIHLAAQAGVRYS 90
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A258HRH0_9CAUL (Protein CapI n=1 Tax=Brevundimonas subvibrioides TaxID=74313 RepID=A0A258HRH0_9CAUL)

HSP 1 Score: 107 bits (267), Expect = 3.900e-26
Identity = 58/92 (63.04%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            MTV+VTGAAGFIG  VA+ LL RGE VVG D+F+ YYDV LKE RA  L+ +  FRMVR D+A     AA +     DRVVHLAAQAGVRYS
Sbjct:    4 MTVVVTGAAGFIGMHVAQRLLQRGETVVGVDDFNAYYDVALKELRAGRLATYPGFRMVRADIADAEAMAALVRASGADRVVHLAAQAGVRYS 95
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BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Match: A0A084IQ32_SALHC (NAD-dependent epimerase/dehydratase n=1 Tax=Salinisphaera hydrothermalis (strain C41B8) TaxID=1304275 RepID=A0A084IQ32_SALHC)

HSP 1 Score: 107 bits (267), Expect = 4.580e-26
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELSRHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS 276
            M++LVTG+AGFIGF VA+ LL RGE V+G DNFDPYYDV LK AR AEL ++ +F+ +  D+A      A  +D   +RVVHLAAQAGVR+S
Sbjct:    1 MSILVTGSAGFIGFHVAQRLLDRGETVIGVDNFDPYYDVALKRARVAELEKNPSFKQIELDIADRQAMPALFADHGFERVVHLAAQAGVRHS 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A3UEJ0_9PROT6.630e-2865.56NAD-dependent epimerase/dehydratase family protein... [more]
A0A3N1KY38_9PROT1.860e-2766.67UDP-glucuronate 4-epimerase n=1 Tax=Stella humosa ... [more]
A0A2A4IAC6_9SPHN1.370e-2661.96Protein CapI n=3 Tax=Sphingomonas TaxID=13687 RepI... [more]
A0A840HT74_9SPHN1.460e-2663.04UDP-glucuronate 4-epimerase n=1 Tax=Rhizorhapis su... [more]
A0A1G3V727_9DELT1.690e-2664.44Capsular biosynthesis protein CpsI n=1 Tax=Syntrop... [more]
A0A3C1C343_9BACT1.910e-2659.78NAD(P)-bd_dom domain-containing protein (Fragment)... [more]
A0A541BYB6_9PROT2.190e-2662.37NAD-dependent epimerase/dehydratase family protein... [more]
A0A848W0Z4_9PROT3.710e-2661.96NAD-dependent epimerase/dehydratase family protein... [more]
A0A258HRH0_9CAUL3.900e-2663.04Protein CapI n=1 Tax=Brevundimonas subvibrioides T... [more]
A0A084IQ32_SALHC4.580e-2658.70NAD-dependent epimerase/dehydratase n=1 Tax=Salini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17519contigP-wetherbeei_contig17519:742..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog314254.OA2633_11370
PFAMsEpimerase,GDP_Man_Dehyd
Model size276
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00289
KEGG koko:K08679
KEGG ReactionR01385
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.09e-28
EggNOG OGsCOG0451@1|root,COG0451@2|Bacteria,1MU7J@1224|Proteobacteria,2TSIP@28211|Alphaproteobacteria,43XBN@69657|Hyphomonadaceae
EC5.1.3.6
Description3-beta hydroxysteroid dehydrogenase/isomerase family
Cds size276
COG categoryM
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186119.1158497-CDS-P-wetherbeei_contig17519:741..10171683186119.1158497-CDS-P-wetherbeei_contig17519:741..1017Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17519 742..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17519.1.1prot_P-wetherbeei_contig17519.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17519 742..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17519.1.1

>prot_P-wetherbeei_contig17519.1.1 ID=prot_P-wetherbeei_contig17519.1.1|Name=mRNA_P-wetherbeei_contig17519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MTVLVTGAAGFIGFSVARALLARGENVVGFDNFDPYYDVRLKEARAAELS
RHGTFRMVRGDVASEGDFAAAISDPAVDRVVHLAAQAGVRYS
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mRNA from alignment at P-wetherbeei_contig17519:742..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17519.1.1 ID=mRNA_P-wetherbeei_contig17519.1.1|Name=mRNA_P-wetherbeei_contig17519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig17519:742..1017+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGTTTTGGTCACCGGTGCCGCCGGCTTCATCGGATTTTCGGTCGC
CCGCGCGCTGCTCGCCCGCGGCGAGAATGTCGTGGGCTTCGACAATTTCG
ATCCCTACTACGACGTGCGCCTGAAAGAGGCCCGTGCGGCCGAGCTTTCC
CGCCACGGCACGTTCCGCATGGTGCGCGGCGACGTGGCGAGCGAAGGCGA
TTTTGCGGCCGCCATCTCGGACCCCGCGGTCGACCGCGTGGTGCACCTGG
CCGCGCAGGCGGGCGTGCGCTATTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17519:742..1017+

>mRNA_P-wetherbeei_contig17519.1.1 ID=mRNA_P-wetherbeei_contig17519.1.1|Name=mRNA_P-wetherbeei_contig17519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig17519:742..1017+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGTTTTGGTCACCGGTGCCGCCGGCTTCATCGGATTTTCGGTCGC
CCGCGCGCTGCTCGCCCGCGGCGAGAATGTCGTGGGCTTCGACAATTTCG
ATCCCTACTACGACGTGCGCCTGAAAGAGGCCCGTGCGGCCGAGCTTTCC
CGCCACGGCACGTTCCGCATGGTGCGCGGCGACGTGGCGAGCGAAGGCGA
TTTTGCGGCCGCCATCTCGGACCCCGCGGTCGACCGCGTGGTGCACCTGG
CCGCGCAGGCGGGCGTGCGCTATTCG
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