mRNA_P-wetherbeei_contig1751.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1751.1.1
Unique NamemRNA_P-wetherbeei_contig1751.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1751.1.1 vs. uniprot
Match: D8LB23_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB23_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 7.600e-7
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  172 FERIRAAYEVLSDAGRRSTYDQGVAMKRWVSNVKSGDWKGTLSGV 306
            FE   AAYEVLSD G++STYDQG+AM+ +V  VK+G W   +S V
Sbjct:  178 FESTTAAYEVLSDPGKKSTYDQGLAMRSFVDKVKAGKWGNVMSAV 222
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BLAST of mRNA_P-wetherbeei_contig1751.1.1 vs. uniprot
Match: A0A835ZL26_9STRA (DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL26_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 8.150e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  169 DFERIRAAYEVLSDAGRRSTYDQGVAMKRWVSNVKSGDWKGTLSGV 306
            +F  +  AY VLSD G+RSTYDQG AMKR V+ +  GDW   ++ V
Sbjct:   46 EFYLLEEAYSVLSDPGKRSTYDQGRAMKRMVAWLDKGDWGSAMAAV 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1751.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB23_ECTSI7.600e-757.78Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A835ZL26_9STRA8.150e-652.17DnaJ domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1751contigP-wetherbeei_contig1751:215..886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LB23
PFAMsDnaJ,DnaJ-X
Model size462
Max annot lvl2759|Eukaryota
KEGG koko:K09537
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.25e-07
EggNOG OGsCOG2214@1|root,KOG0691@2759|Eukaryota
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-27_005510.1
Descriptiontoxin transport
Cds size459
COG categoryO
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.9494486-CDS-P-wetherbeei_contig1751:215..4501683186118.9494486-CDS-P-wetherbeei_contig1751:215..450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1751 216..450 -
1683186118.9580784-CDS-P-wetherbeei_contig1751:662..8861683186118.9580784-CDS-P-wetherbeei_contig1751:662..886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1751 663..886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1751.1.1prot_P-wetherbeei_contig1751.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1751 216..886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1751.1.1

>prot_P-wetherbeei_contig1751.1.1 ID=prot_P-wetherbeei_contig1751.1.1|Name=mRNA_P-wetherbeei_contig1751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
IRDRFRQLARQTHPDAIMGATNRRVGSGGAAGSDDGGGLGGEGGNSKEGG
LIAESVDFERIRAAYEVLSDAGRRSTYDQGVAMKRWVSNVKSGDWKGTLS
GVVRGVGGVTRSAVPLGRRVVEVTAAGIGSVISDLDAAAEDLTALSLAAA
AAA
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mRNA from alignment at P-wetherbeei_contig1751:215..886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1751.1.1 ID=mRNA_P-wetherbeei_contig1751.1.1|Name=mRNA_P-wetherbeei_contig1751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig1751:215..886- (Phaeothamnion wetherbeei SAG_119_79)
ATTCGGGACCGCTTCCGGCAACTGGCGCGGCAGACGCATCCCGATGCCAT
CATGGGCGCTACCAATCGCCGTGTCGGCAGCGGAGGTGCCGCTGGAAGCG
ACGACGGCGGCGGCCTTGGCGGCGAGGGCGGCAACAGCAAGGAAGGGGGG
CTGATTGCCGAAAGCGTCGACTTTGAACGGATCCGAGCGGCCTACGAAGT
ACTCTCCGATGCCGGACGGCGAAGGCGAGCGGGAAATCCATCTTGGTTCT
TCGCGCCACGCGGCAACGTTGGCCTGCGTATTGAAGCGGACATCTTTGAA
CTCTTGCACTCCATCACGGAACTCTCTTTTTCAAGAGGAAGAACGGGCCT
GCCAGTCTCACGCACATGCTATCGTGTCCTGCTGCCCCTTTCCGGACCTT
TTTTATCACCTGTGCGGCCTCCCTAAAAACACACAGCACCTACGATCAGG
GCGTGGCTATGAAGCGGTGGGTGTCGAACGTCAAGTCTGGCGACTGGAAA
GGCACGCTCAGCGGCGTCGTCCGCGGCGTCGGCGGCGTCACGCGCAGCGC
CGTGCCGCTGGGCCGCCGCGTTGTGGAGGTGACCGCCGCCGGCATCGGCT
CGGTCATTTCGGACCTCGACGCCGCCGCGGAGGACTTAACAGCGCTGTCG
CTTGCCGCTGCTGCCGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1751:215..886-

>mRNA_P-wetherbeei_contig1751.1.1 ID=mRNA_P-wetherbeei_contig1751.1.1|Name=mRNA_P-wetherbeei_contig1751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig1751:215..886- (Phaeothamnion wetherbeei SAG_119_79)
ATTCGGGACCGCTTCCGGCAACTGGCGCGGCAGACGCATCCCGATGCCAT
CATGGGCGCTACCAATCGCCGTGTCGGCAGCGGAGGTGCCGCTGGAAGCG
ACGACGGCGGCGGCCTTGGCGGCGAGGGCGGCAACAGCAAGGAAGGGGGG
CTGATTGCCGAAAGCGTCGACTTTGAACGGATCCGAGCGGCCTACGAAGT
ACTCTCCGATGCCGGACGGCGAAGCACCTACGATCAGGGCGTGGCTATGA
AGCGGTGGGTGTCGAACGTCAAGTCTGGCGACTGGAAAGGCACGCTCAGC
GGCGTCGTCCGCGGCGTCGGCGGCGTCACGCGCAGCGCCGTGCCGCTGGG
CCGCCGCGTTGTGGAGGTGACCGCCGCCGGCATCGGCTCGGTCATTTCGG
ACCTCGACGCCGCCGCGGAGGACTTAACAGCGCTGTCGCTTGCCGCTGCT
GCCGCCGCC
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