mRNA_P-wetherbeei_contig1747.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1747.4.1
Unique NamemRNA_P-wetherbeei_contig1747.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: A0A836CLQ8_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLQ8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.860e-30
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  394 AEPAQRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            A P Q++R RCF CNKK+GLTGIECRCKLVFCG+HRYPE H C FDFK +DR  L   V GGG FSKV+RL
Sbjct:   82 APPVQKSRTRCFKCNKKVGLTGIECRCKLVFCGLHRYPESHDCGFDFKASDRLALEKVVLGGGAFSKVDRL 152          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: D8LNW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW2_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.530e-29
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 1
Query:  388 EPA-EPAQRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            EPA  P Q+NRKRCFTC+KK+G TGI CRC  VFC +HRYP+QH C FDFKT+DR  L  TV GGGQFSKVERL
Sbjct:  197 EPAARPVQKNRKRCFTCHKKVGYTGIACRCDYVFCSLHRYPDQHDCTFDFKTSDRNDLKRTVVGGGQFSKVERL 270          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: A0A2D4C9V6_PYTIN (Zinc-finger containing protein, partial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9V6_PYTIN)

HSP 1 Score: 107 bits (267), Expect = 2.330e-26
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  400 PAQRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            P Q+N+KRC+ C KK+GLT IECRC  VFC  HRYP+QH C+FDFK ADRA LA    GGGQF K+E+L
Sbjct:   66 PVQKNKKRCWECKKKVGLTAIECRCGYVFCSGHRYPDQHNCSFDFKAADRAELARRNPGGGQFGKLEKL 134          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: A0A421GSI5_9STRA (AN1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GSI5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.020e-26
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  376 TTEAEPAEP-AQRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            T + +PAE   Q+N+KRC+ C KK+GLT IECRC  VFC  HRY +QH C+FDFKTADRA LA    GGGQF K+E+L
Sbjct:   54 TEDEKPAEKLVQKNKKRCWECKKKVGLTAIECRCGYVFCSNHRYADQHSCSFDFKTADRAELARRNPGGGQFGKLEKL 131          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: H3G9H4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9H4_PHYRM)

HSP 1 Score: 106 bits (265), Expect = 7.670e-26
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  382 EAEPAE-PAQRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            E +PAE P Q+N+KRC+ C KK+GLT IECRC  VFC  HRY +QH C+FDFK +DRA LA    GGGQF K+E+L
Sbjct:   77 EPKPAEKPVQKNKKRCWECKKKVGLTAIECRCGYVFCSGHRYADQHNCSFDFKASDRAELARRNPGGGQFGKLEKL 152          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: A0A662WPI4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPI4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 9.800e-26
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  385 AEPAEPAQRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            A P +  Q+N+KRC+ C KK+GLT IECRC  VFC  HRY +QH C+FDFKTADRA LA    GGGQF K+E+L
Sbjct:   88 AAPEKLVQKNKKRCWECKKKVGLTAIECRCGFVFCSNHRYADQHSCSFDFKTADRAELARLNPGGGQFGKLEKL 161          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: A0A024TCY0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCY0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.380e-25
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  382 EAEPAEPAQRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            EA P +P Q N+ RC+ C KKIGLTGIECRC  V+CG+HRY +QH C FD K AD A LA    GGG F+KVE+L
Sbjct:   87 EAPPEKPVQTNKSRCWECKKKIGLTGIECRCGFVYCGIHRYADQHECTFDHKAADIAELAKRNPGGGHFNKVEKL 161          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: A0A836CMZ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.740e-25
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  412 NRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            NRKRCFTCNKK GLTGIEC+CKLVFC +HR+PE H CAFDFK   R  L   V GGG FSKV+RL
Sbjct:  175 NRKRCFTCNKKTGLTGIECKCKLVFCSLHRHPEAHNCAFDFKEDGRRALERVVLGGGAFSKVDRL 239          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: A0A8K1FHH9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHH9_PYTOL)

HSP 1 Score: 105 bits (263), Expect = 2.000e-25
Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  385 AEPAEP---AQRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            A PAE     Q+N+KRC+ C KK+GLT IECRC  VFC  HRYP+QH C FDFK ADRA LA    GGGQF K+E+L
Sbjct:   86 AAPAEEDKLVQKNKKRCWECKKKVGLTAIECRCGYVFCNGHRYPDQHNCGFDFKAADRAELARRNPGGGQFGKLEKL 162          
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Match: A0A836CDM0_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDM0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.340e-25
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1
Query:  406 QRNRKRCFTCNKKIGLTGIECRCKLVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL 606
            Q+NR RC+ C+KK+GLTG+EC+C  VFC  HRYPE+H C++DF+ +DRA LA TV GGGQF KV ++
Sbjct:   52 QKNRSRCYNCSKKVGLTGLECKCGYVFCSKHRYPEEHSCSYDFRASDRAQLAKTVVGGGQFIKVAQI 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1747.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLQ8_9STRA4.860e-3070.42AN1-type domain-containing protein n=1 Tax=Tribone... [more]
D8LNW2_ECTSI2.530e-2971.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2D4C9V6_PYTIN2.330e-2665.22Zinc-finger containing protein, partial n=1 Tax=Py... [more]
A0A421GSI5_9STRA3.020e-2661.54AN1-type domain-containing protein n=3 Tax=Phytoph... [more]
H3G9H4_PHYRM7.670e-2661.84Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662WPI4_9STRA9.800e-2662.16Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A024TCY0_9STRA1.380e-2561.33Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A836CMZ9_9STRA1.740e-2572.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1FHH9_PYTOL2.000e-2562.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836CDM0_9STRA2.340e-2561.19AN1-type domain-containing protein n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1747contigP-wetherbeei_contig1747:5871..6479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNW2
PFAMszf-A20,zf-AN1
Model size609
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.12e-30
EggNOG OGsKOG3173@1|root,KOG3173@2759|Eukaryota
Descriptionzinc ion binding
Cds size582
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.18349-CDS-P-wetherbeei_contig1747:5870..64521683186118.18349-CDS-P-wetherbeei_contig1747:5870..6452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1747 5871..6452 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.192544-UTR-P-wetherbeei_contig1747:6452..64791683186118.192544-UTR-P-wetherbeei_contig1747:6452..6479Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1747 6453..6479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1747.4.1prot_P-wetherbeei_contig1747.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1747 5871..6452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1747.4.1

>prot_P-wetherbeei_contig1747.4.1 ID=prot_P-wetherbeei_contig1747.4.1|Name=mRNA_P-wetherbeei_contig1747.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MCSKCWRDTVNRQQQQLVDNARAKEAAVAAPPVPPSPTAAPASVATPPLP
PAAAAEGAASASTAASVNGGAADGTAPMVIEGAPSGTESVLAEAAAAAAA
GAIAETAGVTAAAAVTTTEAEPAEPAQRNRKRCFTCNKKIGLTGIECRCK
LVFCGVHRYPEQHGCAFDFKTADRATLANTVKGGGQFSKVERL*
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mRNA from alignment at P-wetherbeei_contig1747:5871..6479-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1747.4.1 ID=mRNA_P-wetherbeei_contig1747.4.1|Name=mRNA_P-wetherbeei_contig1747.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig1747:5871..6479- (Phaeothamnion wetherbeei SAG_119_79)
TTCTCCAGGTCTTCTTCGACGAGCGACATGTGCTCCAAGTGCTGGAGAGA TACCGTGAACCGACAGCAGCAGCAGCTGGTTGATAATGCTCGGGCGAAGG AGGCGGCCGTGGCAGCACCGCCGGTGCCGCCAAGCCCCACCGCCGCGCCA GCCTCTGTCGCAACGCCACCACTGCCACCGGCGGCGGCAGCAGAAGGCGC TGCGTCGGCGTCGACAGCGGCATCGGTCAACGGAGGTGCCGCGGATGGGA CGGCGCCGATGGTGATCGAAGGGGCACCATCAGGAACCGAGTCTGTCCTG GCGGAGGCGGCGGCGGCAGCGGCGGCGGGCGCCATCGCCGAGACGGCGGG GGTGACGGCGGCAGCGGCGGTGACGACGACAGAGGCGGAACCGGCAGAGC CGGCCCAGAGGAACCGCAAGCGCTGCTTCACGTGCAACAAGAAGATCGGG CTGACGGGCATTGAGTGCCGGTGTAAGCTCGTCTTCTGCGGCGTCCACCG CTACCCAGAGCAGCACGGCTGCGCCTTTGACTTCAAGACGGCCGACCGTG CGACGCTAGCCAACACTGTCAAGGGCGGCGGCCAGTTCTCCAAGGTCGAA CGCCTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1747:5871..6479-

>mRNA_P-wetherbeei_contig1747.4.1 ID=mRNA_P-wetherbeei_contig1747.4.1|Name=mRNA_P-wetherbeei_contig1747.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig1747:5871..6479- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCTCCAAGTGCTGGAGAGATACCGTGAACCGACAGCAGCAGCAGCT
GGTTGATAATGCTCGGGCGAAGGAGGCGGCCGTGGCAGCACCGCCGGTGC
CGCCAAGCCCCACCGCCGCGCCAGCCTCTGTCGCAACGCCACCACTGCCA
CCGGCGGCGGCAGCAGAAGGCGCTGCGTCGGCGTCGACAGCGGCATCGGT
CAACGGAGGTGCCGCGGATGGGACGGCGCCGATGGTGATCGAAGGGGCAC
CATCAGGAACCGAGTCTGTCCTGGCGGAGGCGGCGGCGGCAGCGGCGGCG
GGCGCCATCGCCGAGACGGCGGGGGTGACGGCGGCAGCGGCGGTGACGAC
GACAGAGGCGGAACCGGCAGAGCCGGCCCAGAGGAACCGCAAGCGCTGCT
TCACGTGCAACAAGAAGATCGGGCTGACGGGCATTGAGTGCCGGTGTAAG
CTCGTCTTCTGCGGCGTCCACCGCTACCCAGAGCAGCACGGCTGCGCCTT
TGACTTCAAGACGGCCGACCGTGCGACGCTAGCCAACACTGTCAAGGGCG
GCGGCCAGTTCTCCAAGGTCGAACGCCTCTAA
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