mRNA_P-wetherbeei_contig17456.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17456.1.1
Unique NamemRNA_P-wetherbeei_contig17456.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A6H5KZ71_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ71_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 9.810e-31
Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    1 RWGQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEY 234
            +WGQ   GDS KRS AKAVLWRVFAA+NTLIC  FLA DLSVASKIAGTD + KT LFF+NER W  I+WGK YE EY
Sbjct:  166 KWGQDKSGDSTKRSLAKAVLWRVFAASNTLICGVFLAKDLSVASKIAGTDTLFKTALFFLNERAWTKIDWGKEYEPEY 243          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A836CRK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRK4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.770e-30
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    4 WGQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            WG+GA  D AKRS AKA+LWRVFAA NTLIC AFLAGDLSVA KIAG+D + KT LF++NER+W  +EWGK YE+E+ I
Sbjct:  169 WGKGAKTDGAKRSLAKALLWRVFAAGNTLICGAFLAGDLSVALKIAGSDTVFKTFLFYINERMWARVEWGKEYEIEFVI 247          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A835YMA1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMA1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.960e-29
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    4 WGQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            WG+GA  D AKRS AKA+LWRVFA  NTLIC AFLAGDLSVA KIAG+D + KT LF++NER+W  +EWGK Y+ ++ I
Sbjct:   81 WGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 159          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A7S1Y2U4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y2U4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.760e-22
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    7 GQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            G+  G D  KRS AKA+LWR+FA ANTL  + F+A DLS+ASKIAG+DAI KT L F  ER+W  IEWGK Y+VE++I
Sbjct:  173 GRKGGADDVKRSLAKALLWRLFAIANTLTMAVFIAKDLSMASKIAGSDAIFKTALMFGYERVWAKIEWGKEYQVEFSI 250          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A448ZGE6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGE6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.880e-22
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    7 GQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            G+ +G D A RS  KA++WR+FA  NTL  + F+A D+S+ASKIAG+DAI KT L FV ER+W  IEWGK Y+VEYN+
Sbjct:  181 GRKSGADGAGRSLMKALVWRLFAICNTLTMAIFIAKDISIASKIAGSDAIFKTALMFVYERVWAKIEWGKEYQVEYNL 258          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A7S2UXG1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXG1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.100e-22
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   25 DSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            DS  RS  KA++WR FAA NTL+ S F+A D+S+A KIA +D + KT LF++NERIW+ +EWGK Y++EYNI
Sbjct:  156 DSKSRSLTKALVWRAFAATNTLVMSFFMAKDVSIAGKIASSDTVFKTFLFYINERIWSRVEWGKEYQLEYNI 227          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A7S1D3R2_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D3R2_CYCTE)

HSP 1 Score: 94.4 bits (233), Expect = 5.800e-22
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    7 GQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            G+ AG D+  RS AKA++WR+FA ANTL  + F+A DLS+ASKIAG+DA  KTGL F  ERIW  IEWGK Y VE+ I
Sbjct:  164 GRKAGSDAVGRSLAKALIWRLFAVANTLTMALFVAKDLSMASKIAGSDAFFKTGLMFAYERIWAKIEWGKVYAVEFMI 241          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: K0SBC5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBC5_THAOC)

HSP 1 Score: 94.4 bits (233), Expect = 7.170e-22
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    7 GQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            G+  G D   RS AKA+LWR+FA ANTL  S F+A DLS+ASKIAG+DAI KTGL F  ER+W  IEWGK Y +E++I
Sbjct:  175 GRKGGADDLGRSLAKALLWRLFAIANTLTMSYFIAKDLSMASKIAGSDAIFKTGLMFAYERVWAKIEWGKEYIIEFSI 252          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A7S2VIC0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VIC0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.320e-21
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    7 GQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            G+  G D   RS AKA+LWR+FA ANTL  S  +A DLS+ASKIAG+DA+ KTGL FV ER+W  IEWGK Y +E++I
Sbjct:  190 GRKGGADDVGRSLAKALLWRLFAIANTLTMSWLIAKDLSIASKIAGSDAVFKTGLMFVYERVWAKIEWGKEYIIEFSI 267          
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Match: A0A7S1B4Q8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4Q8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.560e-21
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    7 GQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTDAIVKTGLFFVNERIWNAIEWGKAYEVEYNI 240
            G+G+ GD+ KRS  KA++WR+FA ANTL  + F+A DLS+ASKIA +DA++KT + +  ERIW+ +EWGK YE E+ I
Sbjct:  225 GRGSSGDNKKRSLIKALIWRLFAIANTLTVAVFVAKDLSIASKIASSDAVIKTTMMYFYERIWSKVEWGKEYEAEFFI 302          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17456.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ71_9PHAE9.810e-3173.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CRK4_9STRA5.770e-3069.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMA1_9STRA7.960e-2965.82Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S1Y2U4_9STRA1.760e-2261.54Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A448ZGE6_9STRA2.880e-2258.97Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2UXG1_9STRA3.100e-2258.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1D3R2_CYCTE5.800e-2261.54Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
K0SBC5_THAOC7.170e-2261.54Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2VIC0_9STRA1.320e-2160.26Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1B4Q8_9STRA4.560e-2155.13Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17456contigP-wetherbeei_contig17456:1..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRA7
PFAMsDUF2061
Model size243
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.14e-31
EggNOG OGs2DTXE@1|root,2S6IU@2759|Eukaryota
DescriptionPredicted membrane protein (DUF2061)
Cds size243
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.0332394-CDS-P-wetherbeei_contig17456:0..1651683186118.0332394-CDS-P-wetherbeei_contig17456:0..165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17456 1..165 +
1683186118.0421846-CDS-P-wetherbeei_contig17456:370..4481683186118.0421846-CDS-P-wetherbeei_contig17456:370..448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17456 371..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17456.1.1prot_P-wetherbeei_contig17456.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17456 1..448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17456.1.1

>prot_P-wetherbeei_contig17456.1.1 ID=prot_P-wetherbeei_contig17456.1.1|Name=mRNA_P-wetherbeei_contig17456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
RWGQGAGGDSAKRSAAKAVLWRVFAAANTLICSAFLAGDLSVASKIAGTD
AIVKTGLFFVNERIWNAIEWGKAYEVEYNI*
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mRNA from alignment at P-wetherbeei_contig17456:1..448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17456.1.1 ID=mRNA_P-wetherbeei_contig17456.1.1|Name=mRNA_P-wetherbeei_contig17456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=448bp|location=Sequence derived from alignment at P-wetherbeei_contig17456:1..448+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTGGGGGCAGGGCGCCGGCGGCGACTCGGCGAAGCGGTCAGCGGCGAA AGCGGTGCTCTGGCGGGTCTTTGCGGCCGCCAACACGCTCATCTGCAGCG CCTTCTTGGCCGGCGACCTCAGTGTCGCCAGCAAGATCGCCGGGACCGAC GCCATCGTCAAGACTGTGAGTGGCGGGATCCGCCTTTATCGCCGGCTGCT CTGTGTGTGTAGAGAAACATGTCTGATTAAGGCTGATGCATGCTTGGTTC AAGGTTGCGTATCCTGTTGCCTCAACTGTCGTTTCTGTCTATCAATGTCG TTAACGAATTATCGCGCTTACTCTGTGGCGTGCTCTTCCGGCCCGCCACG GCCGACTCCGCTTCCCCCAGGGCCTCTTCTTCGTCAACGAGCGCATCTGG AATGCGATTGAGTGGGGAAAGGCCTACGAAGTCGAGTACAACATCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17456:1..448+

>mRNA_P-wetherbeei_contig17456.1.1 ID=mRNA_P-wetherbeei_contig17456.1.1|Name=mRNA_P-wetherbeei_contig17456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig17456:1..448+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTGGGGGCAGGGCGCCGGCGGCGACTCGGCGAAGCGGTCAGCGGCGAA
AGCGGTGCTCTGGCGGGTCTTTGCGGCCGCCAACACGCTCATCTGCAGCG
CCTTCTTGGCCGGCGACCTCAGTGTCGCCAGCAAGATCGCCGGGACCGAC
GCCATCGTCAAGACTGGCCTCTTCTTCGTCAACGAGCGCATCTGGAATGC
GATTGAGTGGGGAAAGGCCTACGAAGTCGAGTACAACATCTGA
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