mRNA_P-wetherbeei_contig17454.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17454.1.1
Unique NamemRNA_P-wetherbeei_contig17454.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: A0A7X9AGZ3_9BURK (Serine hydroxymethyltransferase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AGZ3_9BURK)

HSP 1 Score: 380 bits (976), Expect = 2.220e-128
Identity = 190/278 (68.35%), Postives = 223/278 (80.22%), Query Frame = 1
Query:   10 SELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLYQKRLEASQESAVSR 843
            +E IDYDQV DLAR+H+PKV+LAG SAYPR++ F  FREIADE+GA  +VDMAHFAGL A G H NPVE AD+VTTTTHKTLRGPRGGMIL +E   K +DK +FPG+QGGPLEH+IA KAVAF EA  E FR YQ + V NA  LA+ L+EGGARL+SGGTD HL+LVDVTPLGLTG+DAE AL  AGIT NKNAIPFDKNPP+V SGIR+G+PALTTRGM   +M ++  WI+++LKA AD  + +RVR  V ELCRQ PLY +RLE+SQE A  R
Sbjct:  148 TERIDYDQVRDLAREHRPKVILAGASAYPREIQFAPFREIADEVGARLMVDMAHFAGLVAAGLHQNPVESADLVTTTTHKTLRGPRGGMILCREELAKAVDKQVFPGFQGGPLEHVIAAKAVAFLEASQESFRDYQRRLVENARVLAETLAEGGARLISGGTDTHLILVDVTPLGLTGQDAETALHRAGITVNKNAIPFDKNPPSVASGIRMGTPALTTRGMGVDQMRQVGGWILEILKAHADLELARRVRQDVEELCRQHPLYTRRLESSQEPAAIR 425          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: A0A355TR55_9BACT (Serine hydroxymethyltransferase n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TR55_9BACT)

HSP 1 Score: 372 bits (954), Expect = 4.500e-125
Identity = 183/275 (66.55%), Postives = 221/275 (80.36%), Query Frame = 1
Query:    7 DSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLYQKRLEASQES 831
            ++ELIDY+ +  LA + KPKV+LAG SAYPR++DF  FR +ADE+GA  +VDMAHFAGL A G H NPV  ADIVTTTTHKTLRGPRGGMIL K    K +DK++FPGYQGGPLEH+IAGKAVAFKEA  + F+ YQ   VANA ALAK L++GGARL+SGGTD HL+LVDVTPLGLTG++AE AL +AGIT NKNAIPFD NPPA+ SGIRLG+PALTTRGM   +M RI  WI+++L AP DEN+  +VR +V ELC++FPLY +RL+  + S
Sbjct:  147 ETELIDYEAMRKLALEAKPKVILAGSSAYPREIDFAPFRAVADEVGAKLMVDMAHFAGLVAAGLHQNPVPIADIVTTTTHKTLRGPRGGMILCKAELAKAVDKNVFPGYQGGPLEHVIAGKAVAFKEAQQDSFKEYQRHIVANARALAKVLADGGARLISGGTDTHLILVDVTPLGLTGREAENALHKAGITVNKNAIPFDSNPPAITSGIRLGTPALTTRGMDIAQMERIGAWILEILSAPQDENLAAKVRREVGELCQEFPLYAQRLQDDRRS 421          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: A0A3D1R762_9DELT (Serine hydroxymethyltransferase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1R762_9DELT)

HSP 1 Score: 343 bits (881), Expect = 3.850e-114
Identity = 176/267 (65.92%), Postives = 200/267 (74.91%), Query Frame = 1
Query:    1 REDSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLY 801
            R D+E IDYDQVA LAR+HKPKV++ G SAYPR +DF  FRE+ADE+GA  +VDMAH AGL A G HP+PV  A+IVTTTTHKTLRGPRGGMIL KE F K ++  IFPG QGGPLEH+IA KAVAFKEAL   F+ YQ Q + NA ALA+ L E G RL SGGTDNHL+LVD+ P  +TGK AE AL  A IT NKN IPFD   P V SG+RLG+PALTTRGM   EM  IA  IV VL+ P DE V KRV+GQ+ EL  QFPLY
Sbjct:  143 RRDTETIDYDQVASLAREHKPKVIMVGASAYPRTIDFPKFREVADEVGAAMVVDMAHIAGLVAVGLHPSPVPLAEIVTTTTHKTLRGPRGGMILCKEPFAKKLNSQIFPGIQGGPLEHVIAAKAVAFKEALEPSFKQYQQQVLDNAQALAEGLKERGLRLCSGGTDNHLILVDLRPKKITGKAAETALGNAHITVNKNMIPFDPEKPTVASGVRLGTPALTTRGMGAAEMKLIAGLIVDVLEQPEDEQVAKRVQGQIKELTAQFPLY 409          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: A0A1F4T5D4_9BACT (Serine hydroxymethyltransferase n=1 Tax=candidate division WOR-1 bacterium RIFOXYC12_FULL_54_18 TaxID=1802584 RepID=A0A1F4T5D4_9BACT)

HSP 1 Score: 343 bits (881), Expect = 3.970e-114
Identity = 172/267 (64.42%), Postives = 207/267 (77.53%), Query Frame = 1
Query:    1 REDSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLY 801
            R+D+E ID+D +   AR+HKPK+++ G +AYPR +DF  FREI DE GA  +VD+AH AGL A G HP+PV  A++VT+TTHKTLRGPR G+IL KEA+ K IDK++FPG QGGPLEH+IAGKAV FKEAL   F+AYQ Q V NA ALA  L++GG RLVSGGTDNHL+LVD+ P  +TGK AE AL+E GIT NKN IPFD   P V SGIR+G+PALTTRGMKE EM  IA+ I + LK PADE VK+ V+ +V ELCRQFPLY
Sbjct:  148 RKDNETIDFDALRSAAREHKPKLIVTGATAYPRTIDFVNFREICDETGALLMVDIAHIAGLVAAGIHPSPVPMAEVVTSTTHKTLRGPRAGLILCKEAYAKAIDKAVFPGIQGGPLEHVIAGKAVCFKEALAPAFKAYQAQIVKNAKALADGLTKGGLRLVSGGTDNHLVLVDLRPFKVTGKIAELALDEVGITVNKNTIPFDPEKPFVTSGIRIGTPALTTRGMKENEMSLIADLICRTLKNPADEKVKESVKEKVAELCRQFPLY 414          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: A0A7C0XAB2_9BACT (Serine hydroxymethyltransferase n=3 Tax=Bacteria candidate phyla TaxID=1783234 RepID=A0A7C0XAB2_9BACT)

HSP 1 Score: 343 bits (879), Expect = 1.060e-113
Identity = 175/271 (64.58%), Postives = 206/271 (76.01%), Query Frame = 1
Query:    1 REDSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLYQKRL 813
            R+D E ID+DQVA LAR+H+PK+++ GYSAYPR +DF  FREIADE+GA  + D+AH AGL A G HPNPV  A  VT+TTHKTLRGPRGG IL+     K +DK++FPG QGGPL H+IA KAVAFK A+ EDFR Y  Q V NA AL +AL E G RLV+GGTDNHL+LVD+  LG+TGK AE ALEEAGIT NKN IPFD   P + SGIR+G PALTTRGMKE EM  I E I  VLKAP +E +K++VR +V ELCR FPLY+ RL
Sbjct:  144 RKDDETIDFDQVAKLAREHRPKLIVTGYSAYPRVIDFAKFREIADEVGAYLMADIAHIAGLVAAGVHPNPVPHAHFVTSTTHKTLRGPRGGFILTTSDLAKIVDKAVFPGIQGGPLMHVIAAKAVAFKLAMGEDFREYSRQIVRNARALGEALREKGLRLVTGGTDNHLLLVDLRTLGITGKAAENALEEAGITVNKNTIPFDPQKPWITSGIRIGVPALTTRGMKEDEMKYIGELIADVLKAPDNEELKRKVRSKVEELCRSFPLYKGRL 414          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: F8AE62_THEID (Serine hydroxymethyltransferase n=2 Tax=Thermodesulfatator TaxID=241192 RepID=F8AE62_THEID)

HSP 1 Score: 340 bits (871), Expect = 1.470e-112
Identity = 165/265 (62.26%), Postives = 210/265 (79.25%), Query Frame = 1
Query:    7 DSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLY 801
            D+E IDYD+V  LA +HKP++++AG SAYPR +DF+ FREIADE+GA  +VDMAH AGL A G HP+PV +A+ VT+TTHKT+RGPRGG IL +E F K IDK+IFPG QGGP  ++IA KAV FKEAL  +F+ YQ Q VANA AL++ L   G RLVSGGTDNHL+LVD+T  G+TG +AE ALE+AGIT NKNAIPFD  PP V SGIR+G+PA+TTRG+KE EM ++ EW+V VLK P++E + K +R +V +LC++FP+Y
Sbjct:  146 DTETIDYDEVRRLALEHKPQMIVAGASAYPRVIDFQAFREIADEVGAYIMVDMAHIAGLVAAGIHPSPVPYAEFVTSTTHKTMRGPRGGFILCQERFAKAIDKTIFPGIQGGPHMNIIAAKAVCFKEALAPEFKTYQQQVVANAQALSEVLKAEGFRLVSGGTDNHLILVDLTSQGITGAEAEEALEKAGITVNKNAIPFDTKPPRVTSGIRIGTPAVTTRGLKEKEMQQVGEWMVAVLKDPSNETLIKDIRAKVEKLCQEFPIY 410          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: A0A0B5FGK6_9DELT (Serine hydroxymethyltransferase n=1 Tax=Geoalkalibacter subterraneus TaxID=483547 RepID=A0A0B5FGK6_9DELT)

HSP 1 Score: 339 bits (869), Expect = 2.690e-112
Identity = 170/272 (62.50%), Postives = 206/272 (75.74%), Query Frame = 1
Query:    1 REDSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLYQKRLE 816
            R+D+  IDYD+VA LAR+H+PK+++ G SAYPR +DF+ FR IADE+GA  +VDMAH AGL A G HPNPV  A+ VT+TTHKTLRGPRGGMIL +E F K ++ +IFPG QGGPL H IA KAVAFKEA T++F+AY  Q V NA ALA ALSE    LVSGGTDNHLML+D T   LTGK AEA LE+AGIT NKNA+PFD   P V SG+R+G+PA TTRG KE EM++IA+WI + L    +E   K +R +V +LCRQFPLY  RL+
Sbjct:  145 RQDTATIDYDEVASLAREHRPKLIVVGASAYPRIIDFEAFRAIADEVGAMVMVDMAHIAGLVAAGEHPNPVPHAEFVTSTTHKTLRGPRGGMILCREEFAKKLNSNIFPGIQGGPLMHAIAAKAVAFKEAQTDEFKAYAAQVVKNAKALADALSERNFNLVSGGTDNHLMLLDFTGTELTGKVAEATLEQAGITVNKNAVPFDTRSPFVTSGVRIGTPATTTRGFKEAEMVQIADWIRRALDNIDNEQQLKSIRNEVEDLCRQFPLYAHRLD 416          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: A0A7C0YTB0_9FIRM (Serine hydroxymethyltransferase n=3 Tax=Bacteria TaxID=2 RepID=A0A7C0YTB0_9FIRM)

HSP 1 Score: 338 bits (867), Expect = 6.740e-112
Identity = 169/267 (63.30%), Postives = 204/267 (76.40%), Query Frame = 1
Query:    1 REDSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLY 801
            ++D+E+ID+D V DLARKHKPK+++ GYSAYPRK+DF+ FREIADE+GA  + D+AH AGL ATG HP+PV  AD VT+TTHKTLRGPRG  IL+KE + K IDK++FPG QGGPL H+IA KAV FKEA++E+F+ YQ Q V NA ALA  L E GARLVSGGTDNHLMLVD+ P  +TGK AE  L    IT NKN IPFD   P V SGIRLG+PALTTRGMKE EM  + + I +VLK P +E+V   V+ +V  LC +FPLY
Sbjct:  145 KKDTEIIDFDMVRDLARKHKPKLIVTGYSAYPRKIDFEKFREIADEVGAYLMADIAHIAGLVATGFHPSPVNTADFVTSTTHKTLRGPRGAFILTKEKYKKIIDKAVFPGTQGGPLMHVIASKAVCFKEAMSEEFKNYQEQIVKNAKALANTLKEEGARLVSGGTDNHLMLVDLRPFKITGKKAERILGSVNITVNKNTIPFDPEKPFVASGIRLGTPALTTRGMKEEEMKIVGKLIARVLKNPENESVLNEVKKEVLSLCERFPLY 411          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase n=3 Tax=Firmicutes TaxID=1239 RepID=GLYA_SYMTH)

HSP 1 Score: 337 bits (865), Expect = 9.530e-112
Identity = 170/265 (64.15%), Postives = 209/265 (78.87%), Query Frame = 1
Query:    7 DSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLY 801
            ++E I+ DQVA+LAR+H+PK+++AGYSAYPR LDFK FREIA+E+GA  +VDMAHFAGLAATG++PNPVE A +VTTTTHKTLRGPRGG IL K+ F K IDK++FPG QGGPL H+IA KAVAFK+    D+RAY GQ V NA ALA+AL E G RLV+GGTDNHLMLVD+ P G+TG+DAE  L+   IT NKNAIP D   P V SGIR+G+PA+TTRGMKE EM++IA+ I + +    DE    R+R +V+EL  +FPLY
Sbjct:  146 ETERINMDQVAELARQHRPKLIVAGYSAYPRVLDFKRFREIAEEVGAILMVDMAHFAGLAATGYYPNPVEHAHVVTTTTHKTLRGPRGGAILCKKEFAKEIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAITHRNDEAELDRIRAEVHELTARFPLY 410          
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Match: A0A831L869_9BACT (Serine hydroxymethyltransferase n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A831L869_9BACT)

HSP 1 Score: 337 bits (864), Expect = 2.240e-111
Identity = 165/265 (62.26%), Postives = 207/265 (78.11%), Query Frame = 1
Query:    7 DSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGATFIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFGKGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALAKALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAIPFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVKKRVRGQVNELCRQFPLY 801
            +SE IDYD +  LAR+H+PK+++AG SAYPR +DF  F++IAD +GA  +VDMAH AGL   G HP PV  AD VT+TTHKTLRGPRGG+ILS++   K + K +FPG QGGPLEH+IA KAV FK A++E+F++YQ QTV NA+A++KAL++ G R+VSGGTDNHL+L DVTPLG+TGKDAE AL+ AGIT NKN IPFD NPP V SGIR+G+P++TTRGMKE EM  IAE IV  LK   DE   +++RG+V EL   FP+Y
Sbjct:  150 ESETIDYDALEKLAREHRPKLIMAGASAYPRIIDFPRFKQIADSVGAILVVDMAHIAGLVGAGVHPTPVPHADFVTSTTHKTLRGPRGGLILSQKKHRKELKKVVFPGIQGGPLEHIIAAKAVCFKLAMSEEFKSYQKQTVRNAAAMSKALADLGLRIVSGGTDNHLLLTDVTPLGITGKDAETALDIAGITVNKNTIPFDTNPPLVSSGIRIGTPSVTTRGMKEAEMKTIAELIVDALKHTTDEAYLQKIRGRVQELTSAFPIY 414          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AGZ3_9BURK2.220e-12868.35Serine hydroxymethyltransferase n=1 Tax=Burkholder... [more]
A0A355TR55_9BACT4.500e-12566.55Serine hydroxymethyltransferase n=1 Tax=bacterium ... [more]
A0A3D1R762_9DELT3.850e-11465.92Serine hydroxymethyltransferase n=1 Tax=Myxococcal... [more]
A0A1F4T5D4_9BACT3.970e-11464.42Serine hydroxymethyltransferase n=1 Tax=candidate ... [more]
A0A7C0XAB2_9BACT1.060e-11364.58Serine hydroxymethyltransferase n=3 Tax=Bacteria c... [more]
F8AE62_THEID1.470e-11262.26Serine hydroxymethyltransferase n=2 Tax=Thermodesu... [more]
A0A0B5FGK6_9DELT2.690e-11262.50Serine hydroxymethyltransferase n=1 Tax=Geoalkalib... [more]
A0A7C0YTB0_9FIRM6.740e-11263.30Serine hydroxymethyltransferase n=3 Tax=Bacteria T... [more]
GLYA_SYMTH9.530e-11264.15Serine hydroxymethyltransferase n=3 Tax=Firmicutes... [more]
A0A831L869_9BACT2.240e-11162.26Serine hydroxymethyltransferase n=1 Tax=Candidatus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17454contigP-wetherbeei_contig17454:585..1430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog667014.Thein_0381
Preferred nameglyA
PFAMsSHMT
Model size846
Max annot lvl200940|Thermodesulfobacteria
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.41e-113
EggNOG OGsCOG0112@1|root,COG0112@2|Bacteria,2GGRD@200940|Thermodesulfobacteria
EC2.1.2.1
DescriptionCatalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
Cds size846
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.0086186-CDS-P-wetherbeei_contig17454:584..14301683186118.0086186-CDS-P-wetherbeei_contig17454:584..1430Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17454 585..1430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17454.1.1prot_P-wetherbeei_contig17454.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17454 585..1430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17454.1.1

>prot_P-wetherbeei_contig17454.1.1 ID=prot_P-wetherbeei_contig17454.1.1|Name=mRNA_P-wetherbeei_contig17454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
REDSELIDYDQVADLARKHKPKVVLAGYSAYPRKLDFKIFREIADEIGAT
FIVDMAHFAGLAATGHHPNPVEFADIVTTTTHKTLRGPRGGMILSKEAFG
KGIDKSIFPGYQGGPLEHMIAGKAVAFKEALTEDFRAYQGQTVANASALA
KALSEGGARLVSGGTDNHLMLVDVTPLGLTGKDAEAALEEAGITCNKNAI
PFDKNPPAVCSGIRLGSPALTTRGMKEVEMLRIAEWIVQVLKAPADENVK
KRVRGQVNELCRQFPLYQKRLEASQESAVSR*
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mRNA from alignment at P-wetherbeei_contig17454:585..1430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17454.1.1 ID=mRNA_P-wetherbeei_contig17454.1.1|Name=mRNA_P-wetherbeei_contig17454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig17454:585..1430- (Phaeothamnion wetherbeei SAG_119_79)
CGCGAAGACTCCGAACTTATCGATTACGACCAGGTGGCCGACCTGGCTCG TAAGCACAAGCCAAAGGTGGTTTTAGCCGGCTATTCGGCTTACCCGCGTA AGCTGGACTTCAAGATTTTCCGTGAAATCGCCGACGAAATTGGCGCCACC TTCATCGTAGACATGGCCCACTTTGCGGGGCTGGCGGCCACCGGCCATCA TCCCAATCCCGTTGAGTTTGCCGACATCGTGACGACGACGACGCACAAGA CGCTGCGTGGCCCTCGCGGCGGTATGATCTTGAGTAAAGAAGCCTTCGGT AAGGGGATCGACAAGAGCATCTTCCCCGGTTATCAGGGAGGCCCGCTCGA GCACATGATCGCAGGCAAGGCAGTCGCATTCAAGGAAGCTCTGACGGAGG ATTTTCGCGCCTATCAGGGACAGACCGTCGCTAACGCCAGTGCGCTTGCC AAAGCGCTTTCGGAAGGCGGCGCGCGCCTCGTGTCGGGCGGCACGGACAA CCACTTGATGCTCGTGGACGTCACCCCGCTCGGTCTGACGGGCAAGGACG CCGAGGCTGCCCTTGAGGAAGCCGGCATCACCTGCAACAAAAACGCTATC CCCTTCGATAAGAACCCGCCGGCCGTATGCAGCGGTATTCGTCTCGGAAG TCCCGCGCTGACCACGCGCGGGATGAAAGAGGTAGAGATGTTGCGTATCG CCGAATGGATCGTTCAAGTTCTCAAGGCGCCTGCCGATGAGAATGTAAAG AAACGGGTTCGCGGTCAGGTCAACGAGCTCTGCCGCCAGTTTCCGCTCTA TCAAAAGCGGCTGGAAGCGAGTCAGGAGTCCGCGGTTTCGCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17454:585..1430-

>mRNA_P-wetherbeei_contig17454.1.1 ID=mRNA_P-wetherbeei_contig17454.1.1|Name=mRNA_P-wetherbeei_contig17454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig17454:585..1430- (Phaeothamnion wetherbeei SAG_119_79)
CGCGAAGACTCCGAACTTATCGATTACGACCAGGTGGCCGACCTGGCTCG
TAAGCACAAGCCAAAGGTGGTTTTAGCCGGCTATTCGGCTTACCCGCGTA
AGCTGGACTTCAAGATTTTCCGTGAAATCGCCGACGAAATTGGCGCCACC
TTCATCGTAGACATGGCCCACTTTGCGGGGCTGGCGGCCACCGGCCATCA
TCCCAATCCCGTTGAGTTTGCCGACATCGTGACGACGACGACGCACAAGA
CGCTGCGTGGCCCTCGCGGCGGTATGATCTTGAGTAAAGAAGCCTTCGGT
AAGGGGATCGACAAGAGCATCTTCCCCGGTTATCAGGGAGGCCCGCTCGA
GCACATGATCGCAGGCAAGGCAGTCGCATTCAAGGAAGCTCTGACGGAGG
ATTTTCGCGCCTATCAGGGACAGACCGTCGCTAACGCCAGTGCGCTTGCC
AAAGCGCTTTCGGAAGGCGGCGCGCGCCTCGTGTCGGGCGGCACGGACAA
CCACTTGATGCTCGTGGACGTCACCCCGCTCGGTCTGACGGGCAAGGACG
CCGAGGCTGCCCTTGAGGAAGCCGGCATCACCTGCAACAAAAACGCTATC
CCCTTCGATAAGAACCCGCCGGCCGTATGCAGCGGTATTCGTCTCGGAAG
TCCCGCGCTGACCACGCGCGGGATGAAAGAGGTAGAGATGTTGCGTATCG
CCGAATGGATCGTTCAAGTTCTCAAGGCGCCTGCCGATGAGAATGTAAAG
AAACGGGTTCGCGGTCAGGTCAACGAGCTCTGCCGCCAGTTTCCGCTCTA
TCAAAAGCGGCTGGAAGCGAGTCAGGAGTCCGCGGTTTCGCGATGA
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