mRNA_P-wetherbeei_contig17435.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A7X8XMX3_9BURK (Flagellar biosynthetic protein FliR n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XMX3_9BURK) HSP 1 Score: 250 bits (638), Expect = 6.250e-80 Identity = 136/257 (52.92%), Postives = 184/257 (71.60%), Query Frame = 1
Query: 1 GTGLLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMA-QFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILLTLCSGWVMDVMKYQFQRNEEQVDEAVIRMAP 768
G GLL F RI++VFVQAPI+G+ H PV GMA+ + + P++P P + P F+ A+L VG +IG+VSFLVMAAAQFGGEMLDIQMGLS AA DPASHGAVNLLR++HFY+AM L+L+++GHH L ++ SF+++P+TYF I T+ +A + I+L+S+L VIG QIA+PA+GALF+ Q ALG++AR APQMNVFM+SFP+N++IGL LLTL ++ V+ QF N + ++ M P
Sbjct: 9 GVGLLAFTRIVLVFVQAPIFGSHHIPKPVLAGMAVTMALVMYPHIPVPADMPQDLFPFIGALLTQACVGLLIGFVSFLVMAAAQFGGEMLDIQMGLSVAASFDPASHGAVNLLRKVHFYLAMNLWLVLDGHHALIRALEASFRVIPVTYFHI---------TSDIAFEMIRLTSNLLVIGTQIAAPALGALFITQCALGLLARVAPQMNVFMLSFPLNIAIGLALLTLSLPLIVRVLSVQFDANINHLVHSIKLMVP 256
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A355TRN3_9BACT (Flagellar biosynthetic protein FliR n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TRN3_9BACT) HSP 1 Score: 248 bits (633), Expect = 3.820e-79 Identity = 134/257 (52.14%), Postives = 181/257 (70.43%), Query Frame = 1
Query: 1 GTGLLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQ-FIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILLTLCSGWVMDVMKYQFQRNEEQVDEAVIRMAP 768
G GLL F RI ++FVQAPI G+ H + V +G A +T P +P P + P F A+L VG VIG+VSF+V+AAAQFGGEMLDIQMGLS+AA DPASHGA+NLLR++ FY +M LYL+++GHH+L +IYKS+Q+VPLTYF ++ +A ++++SDL VIG QIA+PA+ ALF+AQ ALG++AR APQMN+FM+SFP+N++IGLILL L +M VM QF+ N + + + + M P
Sbjct: 14 GVGLLAFVRIALIFVQAPILGSNHIPNTVLVGFAAAITVAIYPTLPVPNDMPTDLFPFFGAILTQACVGLVIGFVSFIVIAAAQFGGEMLDIQMGLSSAASFDPASHGAINLLRKVLFYTSMNLYLVLDGHHQLLAAIYKSYQVVPLTYFN---------MSENLAMTLLRMTSDLLVIGTQIAAPALAALFIAQCALGLLARVAPQMNIFMLSFPLNIAIGLILLRLSYPLIMRVMGNQFEINLDLLLQCIGMMKP 261
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A7Z9PXS3_9BACT (Flagellar biosynthetic protein FliR n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PXS3_9BACT) HSP 1 Score: 227 bits (579), Expect = 2.290e-70 Identity = 118/251 (47.01%), Postives = 176/251 (70.12%), Query Frame = 1
Query: 1 GTGLLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILLTLCSGWVMDVMKYQFQRNEEQVDEAV 753
G GLL F RI +F QAPI ++H K +++G+A + + P +P PE FP ++L +L I VG IG+VS+L MAAAQFGGEM+DIQMGLS AA DP+S G LL RL+FY+AMLLYL V+GHH+L +++ SF+++PLT F++ G L + +FI+ + ++++IGLQ+A+P + ALF+ QVA+G++AR APQMNVFM+SFPMN++IGL+L ++ +M + QF+ N+++ + +
Sbjct: 10 GVGLLAFVRIAFIFQQAPILASKHIKPQMKVGLAGAMAVVAFPNLPMPEYFPEEPRAYILCILGQIVVGLAIGFVSYLCMAAAQFGGEMMDIQMGLSVAASMDPSSGGTSKLLMRLNFYVAMLLYLGVDGHHQLLRALFYSFRVIPLTEFRV-----SGNL---VLRFIEHTEEIFLIGLQVAAPPLAALFITQVAMGLLARVAPQMNVFMLSFPMNIAIGLMLFSIGLPMIMQLHLKQFEINQDRTIDVI 252
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A3D1Z1Z3_9ACTN (Flagellar biosynthetic protein FliR n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A3D1Z1Z3_9ACTN) HSP 1 Score: 144 bits (364), Expect = 1.150e-38 Identity = 81/246 (32.93%), Postives = 148/246 (60.16%), Query Frame = 1
Query: 4 TGLLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILLTLCSGWVMDVMKYQFQRNEEQV 741
T LL+ R+ VF API+G+++ V++G+AL + + LP++P + + F L + + + VGA+IG+ + LV G+++DIQMG DP S+ +V+++ + +A+L++L +NGHH L+ ++ KSF ++PLT F+ G +T+ F+ + ++++VIGL+I PA+G L + +ALG++AR PQMNVF+++ P+ +++G I + ++ M F + EQ+
Sbjct: 18 TFLLVLTRVSGVFFLAPIFGSRNIPTQVKVGLALLTSLVVLPFIPSNVDPGMHMIDFALLLAKELTVGALIGFSATLVFMGFLLAGQIIDIQMGFGMVNVIDPLSNLSVSIMGQFKNLLAILVFLAINGHHFLFTALAKSFDVLPLTMFEF-----GPAITSH---FVGMVANMFVIGLKIGGPAIGVLLITDLALGIIARTVPQMNVFIVAMPLKITVGFIAIISMLSLLLIYMSQIFGQMPEQM 255
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A2M7T6B2_9ACTN (Flagellar biosynthetic protein FliR n=1 Tax=Candidatus Aquicultor secundus TaxID=1973895 RepID=A0A2M7T6B2_9ACTN) HSP 1 Score: 141 bits (355), Expect = 2.250e-37 Identity = 80/239 (33.47%), Postives = 144/239 (60.25%), Query Frame = 1
Query: 4 TGLLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPE-NFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIG----LILLTLCSGWVMDV 705
T LL+ R+ VF AP+ G+++ V+IG+AL + P++P P+ + + F L + + + VGAVIG+ + LV G+++D QMG S DP S+ +V+++ + + +A+L++L +NGH+ L ++ KSF+IVPLT F I PG F+ + ++++IGL++ PA+G LF+ +A+G+V+RA PQ+N+F++ P+ ++IG + +L S +V+ +
Sbjct: 13 TFLLILTRVSGVFFLAPVLGSRNIPTQVKIGLALMTSIALFPFIPSPQIDKSIDMINFTLLIAKELSVGAVIGFTANLVFMGFLLAGQIIDFQMGFSMVNVVDPLSNLSVSIMGQFNNLLAVLIFLAINGHYYLLTALAKSFEIVPLTTFAIT---PG-----VTENFLGMIVNMFIIGLKVGGPAIGVLFMTDLAMGLVSRAVPQINIFIVGMPLKIAIGFATVIAMLAFFSAYVVKI 243
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A7X9BLL9_9FIRM (Flagellar biosynthetic protein FliR n=1 Tax=Syntrophomonadaceae bacterium TaxID=2093811 RepID=A0A7X9BLL9_9FIRM) HSP 1 Score: 138 bits (347), Expect = 3.310e-36 Identity = 81/223 (36.32%), Postives = 132/223 (59.19%), Query Frame = 1
Query: 10 LLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPV-SAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILL 675
LL+F RI +F+ API+ ++ V++ +AL + A+ P + P + S G FMLA+L + G IG V++LV A Q G+++D+QMG DP S + L+ ++ +A+L+YL +NGHH L ++I++S+Q +P + G T + Q L + ++VI L++A+P V A+F+A +ALG +AR PQMNVF+I P+ + G I+L
Sbjct: 9 LLVFGRISGLFLSAPIYASRQIPAQVKVLLALTLAAMMSPTVSAPYKTAIDSTGMFMLALLVEMVTGYAIGLVAYLVFAGIQLAGQLIDMQMGFGIVNVVDPQSGTQLPLIGSFNYLLALLIYLGMNGHHWLLMAIHQSYQFIP-----VMGPNFGAGFTHYLMQ---LGAQMFVIALKVAAPIVAAIFIADIALGFMARTVPQMNVFLIGIPLKILAGFIML 223
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A4J751_DESRM (Flagellar biosynthetic protein FliR n=1 Tax=Desulforamulus reducens (strain ATCC BAA-1160 / DSM 100696 / MI-1) TaxID=349161 RepID=A4J751_DESRM) HSP 1 Score: 136 bits (342), Expect = 1.880e-35 Identity = 79/240 (32.92%), Postives = 132/240 (55.00%), Query Frame = 1
Query: 4 TGLLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYM-PYPENFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILLTLCSGWVMDVMKYQF 720
T L+F R+L P++ V+ G++L + A+ P + P +FP G LAV +GVG IG V V A + G++LD Q+G + AA DP G L+ R F+M ++LY+ ++GHH L ++ KS+++VPLT A GELT + I++ +D + + +QI +P V L + +A+G++ + APQ+N+F + FP+ +++G+ L + + V KY F
Sbjct: 9 TFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPAAASFPGGLWGLGLAVFSEVGVGLAIGLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSRFLFFMTLVLYMNMDGHHALIRALVKSYELVPLTA-----AAMNGELTLLI---IRIFTDTFALAVQICAPVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLF 240
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A2D5ZLC2_9BACT (Flagellar biosynthetic protein FliR n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2D5ZLC2_9BACT) HSP 1 Score: 135 bits (339), Expect = 5.940e-35 Identity = 76/228 (33.33%), Postives = 129/228 (56.58%), Query Frame = 1
Query: 1 GTGLLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILLTLC 684
G +L+F R+ + AP +G ++ VRIG+AL + I P + P+ F+L L+ I +G +G+ +V AAAQF G + QMGL+ A DP +++++ + +A+LL+L+ +GH + ++ SF++VP+ F + GG M ++L+SDL+ + +Q+A+P + ALF V LG++AR PQMNVF++ FP+ + +G LC
Sbjct: 12 GRFILVFMRLATLLALAPFYGFKNVSVRVRIGLALLIALILTPVVDVPDLEESPLSQFVLLGLKEIAIGGFLGFALSIVFAAAQFAGHIAGFQMGLAMANTVDPQGQVSLSVVGEFFYVLAVLLFLVFDGHLFVLKTVVHSFELVPVDAFSLN----GGA----MRHMVRLTSDLFGLAVQLAAPVIAALFATSVTLGLIARTVPQMNVFIVGFPIKIGLGFFACILC 231
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A6N8BKD1_9FIRM (Flagellar biosynthetic protein FliR n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N8BKD1_9FIRM) HSP 1 Score: 134 bits (338), Expect = 7.370e-35 Identity = 76/224 (33.93%), Postives = 127/224 (56.70%), Query Frame = 1
Query: 10 LLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILLTL 681
LL+ RI V AP + ++F ++G+ALG+T + +P +P PE S F LA+ + + VG +G++ L+ +A GG+++DI++G A+ DP + V ++ R F + + L N HH L + KSF+ VP+T Q A+ G L FI+ +D+ V+ L+IA+P + V+LG+V R APQMN+FM+ FP+ + +G+ L++
Sbjct: 12 LLILVRISAFLVAAPFFSLKNFPTKAKVGLALGITVVLVPLVPAPETQFSSIVHFALAISKEVMVGLAMGFICTLIFSALSVGGQLIDIKIGFFASQMFDPMTGAQVTIISRFFFLLGIAFLLATNTHHDLIAILAKSFEAVPVT--QATAARELGLL------FIRAFADMMVLALKIAAPIMAVTLAIDVSLGLVGRTAPQMNIFMLGFPLKIVVGIFTLSI 227
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Match: A0A0F2NAG9_9FIRM (Flagellar biosynthetic protein FliR n=1 Tax=Peptococcaceae bacterium BRH_c4a TaxID=1629716 RepID=A0A0F2NAG9_9FIRM) HSP 1 Score: 134 bits (338), Expect = 7.750e-35 Identity = 76/246 (30.89%), Postives = 135/246 (54.88%), Query Frame = 1
Query: 4 TGLLMFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPVSAGGFMLAVLQNIGVGAVIGWVSFLVMAAAQFGGEMLDIQMGLSAAAQSDPASHGAVNLLRRLHFYMAMLLYLMVNGHHRLWISIYKSFQIVPLTYFQIQHAQPGGELTAQMAQFIKLSSDLYVIGLQIASPAVGALFVAQVALGMVARAAPQMNVFMISFPMNLSIGLILLTLCSGWVMDVMKYQFQRNEEQV 741
T LL+FARI V AP++G Q+ PV+ GMA ++ + LP + P + GFMLAV++ +GVG + G V +++ G++ D+ +G A+ DP S G V L + + + +L+ +++GHH L + +SFQI+PL GG + + F ++ + + +QI++P + + + V LG++ R APQMN+FM+ FP+ + G++ L + + + V + F+ E +
Sbjct: 9 TFLLIFARIASFIVTAPVFGGQYTPGPVKAGMAFVISLVLLPLVTPPLHQMAGLLGFMLAVIREVGVGLLTGLVCHMILQILNILGQIFDMHVGFMMASFFDPTSGGQVTLTAKFLYLLGTILFFIIDGHHMLLFGMARSFQILPLDTAVFN----GGSIFIIIRAFARMVT----VAVQISAPIIAVVLIVDVCLGLLGRTAPQMNIFMLGFPVKIGAGILALAVLAPLLGMVFQSLFRMMERDL 246 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17435.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17435.1.1 >prot_P-wetherbeei_contig17435.1.1 ID=prot_P-wetherbeei_contig17435.1.1|Name=mRNA_P-wetherbeei_contig17435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp MFARILMVFVQAPIWGAQHFKDPVRIGMALGVTAIFLPYMPYPENFPVSAback to top mRNA from alignment at P-wetherbeei_contig17435:294..1061- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17435.1.1 ID=mRNA_P-wetherbeei_contig17435.1.1|Name=mRNA_P-wetherbeei_contig17435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig17435:294..1061- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17435:294..1061- >mRNA_P-wetherbeei_contig17435.1.1 ID=mRNA_P-wetherbeei_contig17435.1.1|Name=mRNA_P-wetherbeei_contig17435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig17435:294..1061- (Phaeothamnion wetherbeei SAG_119_79)back to top |