mRNA_P-wetherbeei_contig17431.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A1H0PW31_9BRAD (Transcriptional regulator, IclR family n=5 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0PW31_9BRAD) HSP 1 Score: 447 bits (1149), Expect = 2.200e-156 Identity = 236/272 (86.76%), Postives = 252/272 (92.65%), Query Frame = 2
Query: 134 MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
MAAIS++DPS SR KA + DPAFATTLAHGLDVLAAFR+++GS SNADLALHTGLSRPTVSRL+YTLE+LGYLKRDAKGRFELGLG LAAAYPVLSALKVRQ+ARPL+R+FAAY GGTVSIAMPFGLDFIYVET+RTTDAV H+PDVGFTGTLAT+AVGRAL SL T EE AAYVA VKAERPEEA+YV TR LPDIELCKERGFAVSLGEWRREIFGVAAPLYRT +GD LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN
Sbjct: 1 MAAISSVDPS--SRAKAPEDHADPAFATTLAHGLDVLAAFRNRTGSLSNADLALHTGLSRPTVSRLSYTLEQLGYLKRDAKGRFELGLGVLAAAYPVLSALKVRQVARPLIREFAAYTGGTVSIAMPFGLDFIYVETVRTTDAVAHLPDVGFTGTLATTAVGRALLSLFTTEEQAAYVADVKAERPEEADYVQTRMLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTPSGDCLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 270
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A1H1U409_9BRAD (Transcriptional regulator, IclR family n=2 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1U409_9BRAD) HSP 1 Score: 439 bits (1130), Expect = 1.780e-153 Identity = 228/260 (87.69%), Postives = 239/260 (91.92%), Query Frame = 2
Query: 170 SRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
SR+K A + DP+FATTLAHGLDVLA FR+ GS SNADLALHTGLSRPTVSRLTYTL +LGYLKRDAKGRFELGLG LAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPH+PDVGFTG+LAT+AVGRAL SLSTPEEL YV T + ERP+E EYV TRTLPDIELCKERGFA+SLGEWRREIFGVAAPLYRT GD LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN
Sbjct: 12 SRSKMAGDQTDPSFATTLAHGLDVLATFRNSPGSLSNADLALHTGLSRPTVSRLTYTLAQLGYLKRDAKGRFELGLGILAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHIPDVGFTGSLATTAVGRALLSLSTPEELELYVQTTRTERPDEIEYVRTRTLPDIELCKERGFAISLGEWRREIFGVAAPLYRTPAGDCLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 271
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: UPI001BAB1856 (IclR family transcriptional regulator n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAB1856) HSP 1 Score: 436 bits (1121), Expect = 4.020e-152 Identity = 230/272 (84.56%), Postives = 246/272 (90.44%), Query Frame = 2
Query: 134 MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
MAA+ST+DPS RT + DPAFATTLAHGLDVLAAFR++SGS SNADLALHTGLSRPTVSRLTYTL +LGYLKRDAKGRF+LGLG LAAAYPVLSALKVRQLARPLMRDFAAY GGTVSIAMPFGLDFIYVETLRTTDAV H+PDVGF +LA +AVGRAL SL T EEL AYVA VKAERPEEA+YV RTLPD+ELCKERGFA+SLGEWRREIFGVAAPLYRTA+GD LSVNCGIPSFRF+AEQIEREC PR+LGLARSIRSLVAN
Sbjct: 1 MAALSTVDPSTRPRTPE--DHADPAFATTLAHGLDVLAAFRNRSGSLSNADLALHTGLSRPTVSRLTYTLAQLGYLKRDAKGRFQLGLGILAAAYPVLSALKVRQLARPLMRDFAAYTGGTVSIAMPFGLDFIYVETLRTTDAVTHLPDVGFASSLAPTAVGRALLSLFTKEELDAYVAGVKAERPEEADYVQARTLPDVELCKERGFAISLGEWRREIFGVAAPLYRTASGDCLSVNCGIPSFRFNAEQIERECAPRMLGLARSIRSLVAN 270
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A1M5LMW5_9BRAD (Transcriptional regulator, IclR family n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5LMW5_9BRAD) HSP 1 Score: 433 bits (1113), Expect = 7.390e-151 Identity = 226/261 (86.59%), Postives = 242/261 (92.72%), Query Frame = 2
Query: 170 SRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVANS 952
SR++AA + DP+FATTLAHGLD+LAAFR+ SGS SNADLAL TGLSRPTVSRLT+TL +LGYLKRDAKGRFELGLG LAAAYPVLSALKVRQ+ARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLAT+AVGRAL SLST +EL YV +VKAERP+E EYV RTLPDIELC+ERGFA+SLGEWRREIFGVAAPLYRTA GD LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV N+
Sbjct: 14 SRSRAAGDPSDPSFATTLAHGLDLLAAFRNGSGSLSNADLALQTGLSRPTVSRLTHTLAQLGYLKRDAKGRFELGLGILAAAYPVLSALKVRQMARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATTAVGRALLSLSTEDELQRYVQSVKAERPDELEYVEARTLPDIELCRERGFALSLGEWRREIFGVAAPLYRTAAGDCLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVDNN 274
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: UPI001C01C656 (IclR family transcriptional regulator n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C01C656) HSP 1 Score: 427 bits (1097), Expect = 1.570e-148 Identity = 223/263 (84.79%), Postives = 237/263 (90.11%), Query Frame = 2
Query: 161 SPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
S +R KA + DP+FATTLAHGLDVLAAFR+ +GS SNADLA TGLSRPTVSRLT+TL +LGYLKRDAKGRFELGLG LAAAYPVLSALKVRQLARPLMRDFAAY GGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGT+AT+AVGRAL SL T +EL AY+ VKAERPEE +YV +RTLPD+ELCKERGFAVSLGEWRREIFGVAAPLYRT GD LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV N
Sbjct: 4 SAATRPKAEADQNDPSFATTLAHGLDVLAAFRNSTGSLSNADLAASTGLSRPTVSRLTHTLAQLGYLKRDAKGRFELGLGILAAAYPVLSALKVRQLARPLMRDFAAYTGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTMATTAVGRALLSLYTKDELQAYLQAVKAERPEELKYVQSRTLPDMELCKERGFAVSLGEWRREIFGVAAPLYRTPAGDCLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVTN 266
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: UPI001BA6B0AD (IclR family transcriptional regulator n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA6B0AD) HSP 1 Score: 417 bits (1073), Expect = 5.880e-145 Identity = 219/256 (85.55%), Postives = 231/256 (90.23%), Query Frame = 2
Query: 182 AAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
AA DP+FATTLAHGLDVLAAFR+ +GS SNA+LA HTGLSRPTVSRLTYTLE+LGYLKRD KGRF LGLG LAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGF +LA +AVGR+L SL T EEL YVA VKAERP+E +YV RTLPDIELCKERGFA+SLGEWRREIFGVAAPLYRT G+ LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN
Sbjct: 6 AAETQADPSFATTLAHGLDVLAAFRNHAGSLSNAELAHHTGLSRPTVSRLTYTLEQLGYLKRDTKGRFLLGLGVLAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFVSSLAPTAVGRSLLSLFTREELDGYVARVKAERPDEYDYVQRRTLPDIELCKERGFAISLGEWRREIFGVAAPLYRTPNGECLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 261
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A0R3MBE3_9BRAD (Uncharacterized protein n=12 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3MBE3_9BRAD) HSP 1 Score: 414 bits (1065), Expect = 1.440e-143 Identity = 218/272 (80.15%), Postives = 236/272 (86.76%), Query Frame = 2
Query: 134 MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
MA S S SR + DP+FATTLAHGLDVLAAFR++ S SNA+LALHTGLSRPTVSRLTYTL +LGYLKRDAKGRF+LGLG LAAAYPVLSALKVRQLARPLMR+FAAY GGTVSIAMPFGLDFIYVETLRTTDAV H+PDVGF +LA +AVGRAL SL T EEL AYV VK+ERPEEA+YV RTLPD+ELCKERGFA+SLGEWRREIFGVAAPLYRT +GD LSVNCGIPSFRF+AEQIERECGPR+LGLARSIRSLV N
Sbjct: 1 MAVKSLTHSSAASRAGEPEDQADPSFATTLAHGLDVLAAFRNRGDSLSNAELALHTGLSRPTVSRLTYTLAQLGYLKRDAKGRFQLGLGILAAAYPVLSALKVRQLARPLMREFAAYTGGTVSIAMPFGLDFIYVETLRTTDAVAHLPDVGFASSLAPTAVGRALLSLFTEEELDAYVVAVKSERPEEADYVERRTLPDVELCKERGFAISLGEWRREIFGVAAPLYRTPSGDCLSVNCGIPSFRFNAEQIERECGPRMLGLARSIRSLVTN 272
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A0R3D5X1_9BRAD (Uncharacterized protein n=21 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3D5X1_9BRAD) HSP 1 Score: 414 bits (1063), Expect = 1.950e-143 Identity = 213/248 (85.89%), Postives = 226/248 (91.13%), Query Frame = 2
Query: 200 DPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV 943
DP+FATTLAHGLDVLAAFR GS SNA+LALHTGLSRPTVSRLTYTLE+LGYL+RD KGRF LGLGALAAAYPVLSALKVRQLARPLMRDFA YAGGTVSIAMPFG+DFIYVETLRTTD PHVPDVGF TLA +AVGRAL SL T +EL AYVA VKAERP+E +YV RTLPDIELC+ERGFAVSLGEWRREIFGVAAPLYRT TG+ LSVNCG+PSFRFSAEQIERECGPRILGLARSIR+LV
Sbjct: 12 DPSFATTLAHGLDVLAAFRRHPGSLSNAELALHTGLSRPTVSRLTYTLEQLGYLRRDTKGRFVLGLGALAAAYPVLSALKVRQLARPLMRDFATYAGGTVSIAMPFGIDFIYVETLRTTDTAPHVPDVGFVSTLAPTAVGRALLSLFTEDELGAYVARVKAERPDEFDYVQKRTLPDIELCRERGFAVSLGEWRREIFGVAAPLYRTPTGECLSVNCGVPSFRFSAEQIERECGPRILGLARSIRALV 259
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A560MFR7_9BRAD (IclR family transcriptional regulator n=20 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A560MFR7_9BRAD) HSP 1 Score: 412 bits (1060), Expect = 5.590e-143 Identity = 219/272 (80.51%), Postives = 234/272 (86.03%), Query Frame = 2
Query: 134 MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
MAA+S+++P DP+FATTLAHGLDVLAAFR+ +G SNA+LA HTGLSRPTVSRLTYTLE+LGYL+RD KGRF LGLG LAAAYPVLS+LKVRQLARPLMRDFAAY GGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGF +LA +AVGRAL SL T EE AYVA VKAERPEE +YV RTLPDIELC ERGFAVSLGEWRREIFGVAAPLYRT G+ LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV N
Sbjct: 1 MAALSSLEPQT-----------DPSFATTLAHGLDVLAAFRNHAGPLSNAELAEHTGLSRPTVSRLTYTLEQLGYLRRDPKGRFVLGLGVLAAAYPVLSSLKVRQLARPLMRDFAAYTGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFVSSLAPTAVGRALLSLFTKEERDAYVARVKAERPEELDYVERRTLPDIELCNERGFAVSLGEWRREIFGVAAPLYRTPAGECLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVTN 261
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A109J763_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium macuxiense TaxID=1755647 RepID=A0A109J763_9BRAD) HSP 1 Score: 409 bits (1051), Expect = 1.310e-141 Identity = 211/248 (85.08%), Postives = 226/248 (91.13%), Query Frame = 2
Query: 200 DPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV 943
DP+FATTLAHGLDVLAAFR S SNA+LA+HTGLSRPTVSRLTYTLE+LGYL+RDAKGRF LGLG LAAAYPVL++LKVRQLARPLMRDFA YAGGTVSIAMPFGLDFIYVETLRTTDA PHVPDVGF +LA +AVGRAL SL T +EL YVA VKAERPEE +YV TRTLPDIELC+ERGFAVSLGEWRREIFGVAAPLYRT TG+ LSVNCG+PSFRFSAEQIERECGPRILGLARSIR+LV
Sbjct: 12 DPSFATTLAHGLDVLAAFRRHSSPLSNAELAVHTGLSRPTVSRLTYTLEQLGYLRRDAKGRFVLGLGMLAAAYPVLASLKVRQLARPLMRDFATYAGGTVSIAMPFGLDFIYVETLRTTDAAPHVPDVGFVSSLAPTAVGRALLSLFTADELDGYVARVKAERPEELDYVQTRTLPDIELCRERGFAVSLGEWRREIFGVAAPLYRTPTGECLSVNCGMPSFRFSAEQIERECGPRILGLARSIRALV 259 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17431.1.1 >prot_P-wetherbeei_contig17431.1.1 ID=prot_P-wetherbeei_contig17431.1.1|Name=mRNA_P-wetherbeei_contig17431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNAback to top mRNA from alignment at P-wetherbeei_contig17431:107..1061- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17431.1.1 ID=mRNA_P-wetherbeei_contig17431.1.1|Name=mRNA_P-wetherbeei_contig17431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=955bp|location=Sequence derived from alignment at P-wetherbeei_contig17431:107..1061- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17431:107..1061- >mRNA_P-wetherbeei_contig17431.1.1 ID=mRNA_P-wetherbeei_contig17431.1.1|Name=mRNA_P-wetherbeei_contig17431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig17431:107..1061- (Phaeothamnion wetherbeei SAG_119_79)back to top |