mRNA_P-wetherbeei_contig17426.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17426.1.1
Unique NamemRNA_P-wetherbeei_contig17426.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A6H5JGE4_9PHAE (Centrosomal protein of 44 kDa n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGE4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.120e-20
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:    1 QALNAGDPRLALAILHFALLDTSPLVARHLVERGY-GLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASER 303
              + +GDPR AL +LH+ LLD SPL A  L++R Y GL S  DF+FV  + R+LRDEF    P +T EQFLT GF E KM LL  ++  V R H  L + ++
Sbjct:   60 DGIVSGDPRAALVVLHWTLLDMSPLFATLLLDRDYAGLTSATDFKFVATSLRMLRDEFNC-RPQLTAEQFLTSGFAEVKMRLLADIVELVMRTHHSLASQQK 160
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A8I955_CHLRE (Centrosomal protein of 44 kDa n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8I955_CHLRE)

HSP 1 Score: 83.2 bits (204), Expect = 2.220e-16
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:    7 LNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASERAGRLRMT 324
            L  GDP   L +L F LL  S  VAR++V  G+ LA   D RFV  +FRLLRD   +    +TP QF  QGF ERK++LLC V+T   + H   V  ER   L+ T
Sbjct:   31 LRLGDPVALLPLLSFTLLKFSRHVARYIVRNGFELAGKTDQRFVETSFRLLRDLLNVRTV-LTPAQFFEQGFAERKVLLLCDVITVCKKLHNDEVRHERLAALKAT 135
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A2K3E171_CHLRE (Centrosomal protein of 44 kDa n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E171_CHLRE)

HSP 1 Score: 83.2 bits (204), Expect = 2.380e-16
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:    7 LNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASERAGRLRMT 324
            L  GDP   L +L F LL  S  VAR++V  G+ LA   D RFV  +FRLLRD   +    +TP QF  QGF ERK++LLC V+T   + H   V  ER   L+ T
Sbjct:   31 LRLGDPVALLPLLSFTLLKFSRHVARYIVRNGFELAGKTDQRFVETSFRLLRDLLNVRTV-LTPAQFFEQGFAERKVLLLCDVITVCKKLHNDEVRHERLAALKAT 135
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A835SXJ3_CHLIN (Centrosomal protein of 44 kDa n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SXJ3_CHLIN)

HSP 1 Score: 83.2 bits (204), Expect = 2.380e-16
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:    7 LNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASERAGRLRMT 324
            L  GDP   L +L F LL  S  VAR++V  G+ LA   D RFV  +FRLLRD   +    +TP QF  QGF ERK++LLC V+T   + H   V  ER   L+ T
Sbjct:   31 LRLGDPVALLPLLSFTLLKFSRHVARYIVRNGFELAGKTDQRFVETSFRLLRDLLNVRTV-LTPAQFFEQGFAERKVLLLCDVITVCKKLHNDEVRHERLAALKAT 135
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A2J8AB02_9CHLO (Centrosomal protein of 44 kDa n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AB02_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 3.260e-16
Identity = 48/106 (45.28%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:    7 LNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASERAGRLRMT 324
            L  GDP   L +L FALL  S  VAR +V  G+ LA   D RFV   FRL RD   +    +TP QF  QGF ERK++LLC V+T   + H   V  ER   L+ T
Sbjct:   52 LRLGDPVALLPLLSFALLKFSRHVARFIVRSGFELAGKTDQRFVEAAFRLFRDVLNVRTV-LTPAQFFEQGFAERKVLLLCDVITVCKKVHNEEVRQERLAALKAT 156
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A835SRP4_9CHLO (Centrosomal protein of 44 kDa n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SRP4_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 8.270e-16
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    7 LNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASERAGRLR 318
            L  GDP   L +L F LL  S  VAR++V  G+ LA   D RFV  +FRLLRD   +    +TP QF  QGF ERK++LLC V+T   + H   V  ER   L+
Sbjct:   31 LRLGDPVALLPLLSFTLLKFSRHVARYIVRNGFELAGKTDQRFVETSFRLLRDLLNVRTV-LTPAQFFEQGFAERKVLLLCDVITVCKKLHNDEVRHERLAALK 133
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A383V4B6_TETOB (Centrosomal protein of 44 kDa n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V4B6_TETOB)

HSP 1 Score: 78.6 bits (192), Expect = 9.680e-15
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:    7 LNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASER 303
            L+ GDP  AL +LHFALL  S  VA +++++G  L    D  FV   F+LLRD   +    +TP+QFL QGF ERK++LL  VL AV   H      ER
Sbjct:   31 LSLGDPLAALPLLHFALLKYSRHVAAYILQQGVQLQGKTDEGFVKAAFKLLRDHLGLKTV-LTPDQFLEQGFAERKVLLLGAVLAAVRNIHAAAAKQER 128
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A830HVN3_9CHLO (Centrosomal protein of 44 kDa n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HVN3_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 3.840e-14
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:    7 LNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQH-----QRLVASERAG 309
            L AGDP   L  LH+ LL  S  +AR+L + GY L   +D+RFV    +LLR+ F    P +TP QFL+ GF ERK++L+  V+     +H     QR  A +R+G
Sbjct:   31 LKAGDPVALLPALHYVLLGFSRPLARYLADSGYHLEESSDWRFVESAAKLLREVFRY-RPALTPVQFLSHGFAERKVLLVLDVIRVAKAKHNELLRQRHAAGQRSG 135
[Close]
BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A061RRN5_9CHLO (Centrosomal protein of 44 kDa n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RRN5_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 6.040e-14
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 QALNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLV--ASERAGRLR 318
            Q +  GDP   L ILH++L+  S  +AR +VE  Y L    D RF+   ++LLR E     P ++  QFL+QGF ERK++ +C ++    ++H  L+  A + AG+ R
Sbjct:   32 QKVRQGDPAAFLPILHYSLISFSKPLAREIVENNYELNGKTDLRFLESVWKLLR-ELVNYKPALSVNQFLSQGFAERKILTVCDIVALCRQRHSELLRQAGKHAGKRR 138
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BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Match: A0A250XFA9_9CHLO (Centrosomal protein of 44 kDa n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XFA9_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 1.190e-13
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:    7 LNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTFRLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASERAGRLR 318
            L  GDP   L + HF LL  S  VA  +   GY L    D RFV   F+LLRD F + A  +T  QFL QGF ERK++LLC V++A  + H   +  ER   L+
Sbjct:    5 LKLGDPASLLPLFHFVLLRFSRHVATCITSAGYELQGKTDQRFVENCFKLLRDCFNIRAV-LTVSQFLEQGFAERKILLLCDVISACKKIHNDEIRKERLAALK 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17426.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGE4_9PHAE7.120e-2048.04Centrosomal protein of 44 kDa n=1 Tax=Ectocarpus s... [more]
A8I955_CHLRE2.220e-1645.28Centrosomal protein of 44 kDa n=1 Tax=Chlamydomona... [more]
A0A2K3E171_CHLRE2.380e-1645.28Centrosomal protein of 44 kDa n=1 Tax=Chlamydomona... [more]
A0A835SXJ3_CHLIN2.380e-1645.28Centrosomal protein of 44 kDa n=1 Tax=Chlamydomona... [more]
A0A2J8AB02_9CHLO3.260e-1645.28Centrosomal protein of 44 kDa n=1 Tax=Tetrabaena s... [more]
A0A835SRP4_9CHLO8.270e-1645.19Centrosomal protein of 44 kDa n=1 Tax=Chlamydomona... [more]
A0A383V4B6_TETOB9.680e-1545.45Centrosomal protein of 44 kDa n=1 Tax=Tetradesmus ... [more]
A0A830HVN3_9CHLO3.840e-1441.51Centrosomal protein of 44 kDa n=1 Tax=Pycnococcus ... [more]
A0A061RRN5_9CHLO6.040e-1437.04Centrosomal protein of 44 kDa n=1 Tax=Tetraselmis ... [more]
A0A250XFA9_9CHLO1.190e-1343.27Centrosomal protein of 44 kDa n=1 Tax=Chlamydomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17426contigP-wetherbeei_contig17426:479..802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3055.EDP06944
PFAMsCEP44
Model size324
Max annot lvl3041|Chlorophyta
KEGG koko:K16761
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.64e-17
EggNOG OGs28WZA@1|root,2R3RQ@2759|Eukaryota,37WMW@33090|Viridiplantae,34IER@3041|Chlorophyta
DescriptionCentrosomal spindle body, CEP44
Cds size324
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.1221306-CDS-P-wetherbeei_contig17426:478..8021683186117.1221306-CDS-P-wetherbeei_contig17426:478..802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17426 479..802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17426.1.1prot_P-wetherbeei_contig17426.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17426 479..802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17426.1.1

>prot_P-wetherbeei_contig17426.1.1 ID=prot_P-wetherbeei_contig17426.1.1|Name=mRNA_P-wetherbeei_contig17426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
QALNAGDPRLALAILHFALLDTSPLVARHLVERGYGLASLADFRFVTVTF
RLLRDEFEMGAPGMTPEQFLTQGFGERKMMLLCGVLTAVTRQHQRLVASE
RAGRLRMT
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mRNA from alignment at P-wetherbeei_contig17426:479..802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17426.1.1 ID=mRNA_P-wetherbeei_contig17426.1.1|Name=mRNA_P-wetherbeei_contig17426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig17426:479..802+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCGCTCAACGCCGGCGATCCCCGGCTTGCGCTGGCAATTCTGCACTT
TGCGCTTCTGGACACATCGCCGCTGGTCGCCCGGCATCTTGTGGAGCGAG
GCTACGGCCTCGCGAGCCTGGCTGACTTTCGATTCGTCACGGTCACCTTC
CGGCTCTTGCGAGACGAGTTTGAAATGGGAGCGCCGGGCATGACTCCCGA
GCAGTTTCTCACGCAGGGCTTCGGAGAGCGCAAGATGATGCTGCTATGCG
GCGTTTTGACTGCGGTGACTCGACAACATCAGCGCTTGGTGGCCTCGGAG
CGCGCGGGGCGCCTGCGAATGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17426:479..802+

>mRNA_P-wetherbeei_contig17426.1.1 ID=mRNA_P-wetherbeei_contig17426.1.1|Name=mRNA_P-wetherbeei_contig17426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig17426:479..802+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCGCTCAACGCCGGCGATCCCCGGCTTGCGCTGGCAATTCTGCACTT
TGCGCTTCTGGACACATCGCCGCTGGTCGCCCGGCATCTTGTGGAGCGAG
GCTACGGCCTCGCGAGCCTGGCTGACTTTCGATTCGTCACGGTCACCTTC
CGGCTCTTGCGAGACGAGTTTGAAATGGGAGCGCCGGGCATGACTCCCGA
GCAGTTTCTCACGCAGGGCTTCGGAGAGCGCAAGATGATGCTGCTATGCG
GCGTTTTGACTGCGGTGACTCGACAACATCAGCGCTTGGTGGCCTCGGAG
CGCGCGGGGCGCCTGCGAATGACG
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