mRNA_P-wetherbeei_contig17411.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17411.1.1
Unique NamemRNA_P-wetherbeei_contig17411.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: A0A6U2AQ63_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2AQ63_9STRA)

HSP 1 Score: 172 bits (436), Expect = 3.450e-50
Identity = 82/121 (67.77%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFYFAKSQPK 363
            Q DALA GK+L +L AE VPE LRPHKVFPGN+PSSSIL   L+A++ GQLL+LYEHRTAVQGF+WG+NSFDQWGVELGKVLAK+VRAQL+A+R  GA V GFN ST++L+  Y + ++ +
Sbjct:  258 QPDALAYGKTLNDLAAEGVPEELRPHKVFPGNRPSSSILLTRLDAYAAGQLLALYEHRTAVQGFLWGINSFDQWGVELGKVLAKQVRAQLTASRKSGASVQGFNSSTSALLEAYLSATRKR 378          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: X0Z6Q1_9ZZZZ (Glucose-6-phosphate isomerase n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0Z6Q1_9ZZZZ)

HSP 1 Score: 164 bits (415), Expect = 4.020e-50
Identity = 81/116 (69.83%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFYFA 348
            Q DALA GK+L E+  E VPE LR HKVF GN+PSSSIL   L+AF+VGQLL++YEHRTAVQGFIWG+NSFDQWGVELGK+LAK+VR QLS++R  GA V GFN ST+SL+  Y A
Sbjct:    7 QPDALAYGKTLNEVAQEGVPEELRHHKVFAGNRPSSSILMTGLDAFAVGQLLAIYEHRTAVQGFIWGINSFDQWGVELGKMLAKQVRTQLSSSRKSGAHVQGFNKSTSSLLEAYLA 122          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: A0A7S2PKV4_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKV4_9STRA)

HSP 1 Score: 163 bits (413), Expect = 8.370e-50
Identity = 79/119 (66.39%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFYFAKSQ 357
            Q DALA GK+L ++  E VPE LR HKVF GN+PSSS+L   L+AF++GQLL ++EHRTAVQGFIWG+NSFDQWGVELGKVLAK+VR+QL+A+R  GA V GFN ST SL+ FY + S+
Sbjct:    8 QPDALAFGKTLNDVIQEGVPEKLRAHKVFTGNRPSSSMLMTRLDAFAIGQLLVIFEHRTAVQGFIWGINSFDQWGVELGKVLAKQVRSQLTASRKSGASVQGFNTSTQSLLEFYMSGSK 126          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: A0A7S0BL51_9RHOD (Glucose-6-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL51_9RHOD)

HSP 1 Score: 162 bits (409), Expect = 8.000e-47
Identity = 77/114 (67.54%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFY 342
            Q DALA GK+ EE  AE +PE L PHKVF GN+PSSS+L  +L+AF +G++LSL+EHRTAV+GF+WG+NSFDQWGVELGKVLAK+VR+QLS TR +GA V+GFN STT +M  Y
Sbjct:  199 QPDALALGKTAEECRAEGIPENLVPHKVFNGNRPSSSLLITKLDAFQLGRILSLFEHRTAVEGFVWGINSFDQWGVELGKVLAKQVRSQLSKTRKEGAGVSGFNYSTTRMMQSY 312          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: A0A662WKH9_9STRA (Glucose-6-phosphate isomerase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKH9_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.200e-46
Identity = 81/116 (69.83%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFYFA 348
            Q DALA GKSLE+LEAE VP  LR HK+FPGN+PS S+LF +L+AFS GQLL+LYEHRT VQG IWG+NSFDQWGVELGKVLAK+VR+QL+A+R + A V GFN +TTS++  Y A
Sbjct:  439 QPDALARGKSLEDLEAEGVPAALRNHKMFPGNRPSISLLFQKLDAFSCGQLLALYEHRTVVQGSIWGLNSFDQWGVELGKVLAKQVRSQLTASRKESAPVKGFNSATTSMLEAYLA 554          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: M4BUY2_HYAAE (Glucose-6-phosphate isomerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUY2_HYAAE)

HSP 1 Score: 166 bits (420), Expect = 2.270e-46
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFYFA 348
            Q DALA GKSLE+L+AENV E L  HK+FPGN+PS S+LF +L+A+S GQLL+LYEHRT VQG IWG+NSFDQWGVELGKVLAK+VRAQLSA+R++ A V GFN +TTS++  Y A
Sbjct:  438 QPDALARGKSLEDLKAENVAEDLCNHKLFPGNRPSISLLFKKLDAYSAGQLLALYEHRTVVQGAIWGINSFDQWGVELGKVLAKQVRAQLSASRNENAPVEGFNSATTSMLEAYLA 553          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: A0A8K1FFQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFQ4_PYTOL)

HSP 1 Score: 166 bits (420), Expect = 2.430e-46
Identity = 81/116 (69.83%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFYFA 348
            Q DALA GKSL++LEAENVPE LR HK+FPGN+PS S+LF +L+AF+ GQLL+LYEHRT VQG IWG+NSFDQWGVELGKVLAK+VR QL A+R  GA + GFN ST+ L++ Y A
Sbjct:  442 QPDALARGKSLKDLEAENVPEHLRAHKLFPGNRPSISLLFPKLDAFTCGQLLALYEHRTVVQGAIWGLNSFDQWGVELGKVLAKQVRNQLQASRTSGAPIQGFNSSTSFLLSKYLA 557          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: H3G8D0_PHYRM (Glucose-6-phosphate isomerase n=45 Tax=Peronosporaceae TaxID=4777 RepID=H3G8D0_PHYRM)

HSP 1 Score: 165 bits (418), Expect = 4.480e-46
Identity = 80/114 (70.18%), Postives = 97/114 (85.09%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFY 342
            Q DALA GKSLE+L+AE VPE LR HK+FPGN+PS S+LF +L+AFS GQLL+LYEHRT VQG IWG+NSFDQWGVELGKVLAK+VR+QLSA+R + A V GFN +T+S++  Y
Sbjct:  438 QPDALARGKSLEDLKAEGVPENLRNHKLFPGNRPSVSLLFKKLDAFSAGQLLALYEHRTVVQGSIWGLNSFDQWGVELGKVLAKQVRSQLSASRSENAPVKGFNSATSSMLEAY 551          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: D8LQV8_ECTSI (Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQV8_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 4.610e-46
Identity = 80/123 (65.04%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVA-GFNPSTTSLMNFYFAKSQPKA 366
            Q D LA  K+ EELE E VPEW RPHKVF GN+PS S+LF +L+AFS GQLL++YEHRTAVQGF+WG+NSFDQWGVELGK LA KVR  LS  R  G  V+ GFNPST++LM +Y A    K+
Sbjct:  437 QPDVLAYAKTAEELEKEGVPEWFRPHKVFTGNRPSLSLLFPKLDAFSCGQLLAIYEHRTAVQGFVWGLNSFDQWGVELGKKLATKVRTALSTARTSGGDVSEGFNPSTSTLMTYYLANGASKS 559          
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Match: A0A7S0C7V0_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7V0_9STRA)

HSP 1 Score: 163 bits (412), Expect = 5.270e-46
Identity = 78/119 (65.55%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    1 QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQLLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKVAGFNPSTTSLMNFYFAKSQ 357
            Q DALA GK+L +  AE +PE LR HKVF GN+PSSS+L   L+AF++GQLL++YEHRTAVQGF+WG+NSFDQWGVELGKVLAK+VR+QLSA+R   A V GFN STTSL++ Y    +
Sbjct:  327 QPDALAYGKTLADCVAEGIPEELREHKVFSGNRPSSSMLLTRLDAFAIGQLLAIYEHRTAVQGFVWGINSFDQWGVELGKVLAKQVRSQLSASRKTNATVQGFNSSTTSLLDAYLGSKK 445          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17411.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U2AQ63_9STRA3.450e-5067.77Glucose-6-phosphate isomerase n=1 Tax=Pseudictyota... [more]
X0Z6Q1_9ZZZZ4.020e-5069.83Glucose-6-phosphate isomerase n=1 Tax=marine sedim... [more]
A0A7S2PKV4_9STRA8.370e-5066.39Glucose-6-phosphate isomerase n=1 Tax=Leptocylindr... [more]
A0A7S0BL51_9RHOD8.000e-4767.54Glucose-6-phosphate isomerase n=1 Tax=Rhodosorus m... [more]
A0A662WKH9_9STRA1.200e-4669.83Glucose-6-phosphate isomerase n=2 Tax=Nothophytoph... [more]
M4BUY2_HYAAE2.270e-4669.83Glucose-6-phosphate isomerase n=1 Tax=Hyaloperonos... [more]
A0A8K1FFQ4_PYTOL2.430e-4669.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3G8D0_PHYRM4.480e-4670.18Glucose-6-phosphate isomerase n=45 Tax=Peronospora... [more]
D8LQV8_ECTSI4.610e-4665.04Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus T... [more]
A0A7S0C7V0_9STRA5.270e-4665.55Glucose-6-phosphate isomerase n=1 Tax=Proboscia in... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17411contigP-wetherbeei_contig17411:37..672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4787.PITG_01862T0
PFAMsPGI
Model size369
Max annot lvl4776|Peronosporales
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
Hectar predicted targeting categoryother localisation
Exons2
Evalue7e-48
EggNOG OGsCOG0166@1|root,KOG2446@2759|Eukaryota,3Q8VK@4776|Peronosporales
EC5.3.1.9
DescriptionPhosphoglucose isomerase
Cds size369
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.8497894-CDS-P-wetherbeei_contig17411:36..1171683186116.8497894-CDS-P-wetherbeei_contig17411:36..117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17411 37..117 +
1683186116.861784-CDS-P-wetherbeei_contig17411:384..6721683186116.861784-CDS-P-wetherbeei_contig17411:384..672Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17411 385..672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17411.1.1prot_P-wetherbeei_contig17411.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17411 37..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17411.1.1

>prot_P-wetherbeei_contig17411.1.1 ID=prot_P-wetherbeei_contig17411.1.1|Name=mRNA_P-wetherbeei_contig17411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
QADALATGKSLEELEAENVPEWLRPHKVFPGNKPSSSILFHELNAFSVGQ
LLSLYEHRTAVQGFIWGVNSFDQWGVELGKVLAKKVRAQLSATRHDGAKV
AGFNPSTTSLMNFYFAKSQPKA*
back to top

mRNA from alignment at P-wetherbeei_contig17411:37..672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17411.1.1 ID=mRNA_P-wetherbeei_contig17411.1.1|Name=mRNA_P-wetherbeei_contig17411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig17411:37..672+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCGGATGCGTTGGCGACGGGGAAGTCGCTGGAGGAACTCGAGGCCGA GAACGTGCCTGAGTGGCTGCGCCCGCACAAGGTCAGTTAGTACCTCCAGC GAGGCTGTTGTAAAGAGAGGTGGATCGACTAGCCTCTGGCTTCTTCCCCC CCCCCAGAAACTATTTTGCGAGGCTGAAGCTGAACATCCGCTGATGAGTA TCGGGTTGCAGGCGGTTGGTTGACATTGTTAACTCCCCGATTAGCCCTTC CGTTCTCTTCCGCCGGTTGCCTCTCTCTCCTCCTCGACGTCGGCAAACCA ACGAAAAGCTTTTCTCTCCCATCAAAAACGAAACCCCGATCCAAAAAGGT GTTCCCGGGCAACAAGCCGTCTTCGTCGATCCTCTTCCACGAGCTCAACG CCTTCTCGGTGGGGCAGCTGCTGTCGCTCTACGAGCACCGCACGGCCGTG CAGGGCTTCATCTGGGGTGTCAACTCGTTCGACCAGTGGGGCGTCGAGCT CGGCAAAGTGCTCGCCAAGAAGGTGCGGGCACAGCTGTCGGCGACGCGCC ACGATGGCGCCAAGGTCGCCGGATTCAACCCCAGCACGACGTCGCTCATG AATTTTTACTTCGCCAAGAGCCAACCCAAGGCCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17411:37..672+

>mRNA_P-wetherbeei_contig17411.1.1 ID=mRNA_P-wetherbeei_contig17411.1.1|Name=mRNA_P-wetherbeei_contig17411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig17411:37..672+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCGGATGCGTTGGCGACGGGGAAGTCGCTGGAGGAACTCGAGGCCGA
GAACGTGCCTGAGTGGCTGCGCCCGCACAAGGTGTTCCCGGGCAACAAGC
CGTCTTCGTCGATCCTCTTCCACGAGCTCAACGCCTTCTCGGTGGGGCAG
CTGCTGTCGCTCTACGAGCACCGCACGGCCGTGCAGGGCTTCATCTGGGG
TGTCAACTCGTTCGACCAGTGGGGCGTCGAGCTCGGCAAAGTGCTCGCCA
AGAAGGTGCGGGCACAGCTGTCGGCGACGCGCCACGATGGCGCCAAGGTC
GCCGGATTCAACCCCAGCACGACGTCGCTCATGAATTTTTACTTCGCCAA
GAGCCAACCCAAGGCCTAG
back to top