mRNA_P-wetherbeei_contig17397.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17397.1.1
Unique NamemRNA_P-wetherbeei_contig17397.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: A0A7C4XS96_9HYPH (TIGR02301 family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XS96_9HYPH)

HSP 1 Score: 162 bits (411), Expect = 2.750e-49
Identity = 84/120 (70.00%), Postives = 100/120 (83.33%), Query Frame = 1
Query:   37 TSALALVAAIALAHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            T  LAL+A      PL AQ + KPYDDRL+RLSEILGA+HYLRELC ANEGQ WRDRMREL++AEG++ALRRA+LTRSFNQGY SYS+T++ CT TAQ+AI RF+ EG QIA+ LVR+IP
Sbjct:   13 TMLLALMATAP--RPLLAQDI-KPYDDRLLRLSEILGAIHYLRELCGANEGQLWRDRMRELLDAEGTSALRRAKLTRSFNQGYNSYSRTYRACTPTAQTAISRFLAEGEQIADGLVRTIP 129          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: A0A109B9K1_HYPSL (Uncharacterized protein n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109B9K1_HYPSL)

HSP 1 Score: 158 bits (399), Expect = 2.680e-47
Identity = 79/126 (62.70%), Postives = 98/126 (77.78%), Query Frame = 1
Query:   19 RRLSCRTSALALVAAIALAHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            RR + R   + LV   ALA P +A    KPYD+RL RLSEILGA+HYLRELC A EGQ WRDRM EL+++EG++ALR+ARLTRSFN+GY SYS+T+  C+ +AQSAI RF+ EGA IA+ LVRS+P
Sbjct:   16 RRHALRRLGVGLVLITALALPAAAAPDSKPYDERLFRLSEILGAIHYLRELCGAEEGQQWRDRMSELLQSEGTSALRKARLTRSFNKGYQSYSRTYNTCSPSAQSAINRFITEGATIADTLVRSVP 141          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: A0A433B4R5_HYPSQ (TIGR02301 family protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A433B4R5_HYPSQ)

HSP 1 Score: 154 bits (390), Expect = 5.880e-46
Identity = 77/132 (58.33%), Postives = 104/132 (78.79%), Query Frame = 1
Query:    1 NVMRKCRRLSCRTSALALVAAIALAHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            NV R+ R L     AL+++ + A    + A +  KPYDDRLMRLSEILGAVHYLRELC ANEGQ WRDRMR+L++AEGS ALRRA+LTR+FNQGY SYS+T+  C+ +AQ+AI RF++EG+++++ L+++ P
Sbjct:    7 NVKRRSRYLVAPVLALSVLFSGAGGSSVMAASDTKPYDDRLMRLSEILGAVHYLRELCGANEGQYWRDRMRDLMDAEGSTALRRAKLTRAFNQGYRSYSRTYNTCSPSAQTAINRFLSEGSELSDGLLKAFP 138          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: A0A2W4KV70_9PROT (TIGR02301 family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KV70_9PROT)

HSP 1 Score: 153 bits (387), Expect = 1.440e-45
Identity = 76/129 (58.91%), Postives = 100/129 (77.52%), Query Frame = 1
Query:   10 RKCRRLSCRTSALALVAAIALAHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            ++C   S R  ALA+    A     + +T  KPYDD+LMRLSEILGAVHYLRELC A+EGQ WRDRMRELIEAEG+ ALRRARLTRSFN+GY  YS+T++ CT +A++A++RF+ E +Q+ E L++++P
Sbjct:    8 KRCVFASARRLALAMPFVFAAGTAFAQET--KPYDDKLMRLSEILGAVHYLRELCGADEGQLWRDRMRELIEAEGTTALRRARLTRSFNKGYQGYSRTYRTCTPSAETAVKRFLTEASQLTENLMKNVP 134          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: UPI001FE711DE (TIGR02301 family protein n=1 Tax=Hyphomicrobium methylovorum TaxID=84 RepID=UPI001FE711DE)

HSP 1 Score: 153 bits (386), Expect = 2.790e-45
Identity = 72/116 (62.07%), Postives = 98/116 (84.48%), Query Frame = 1
Query:   52 LVAAIALAHPLSAQTVE-KPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            +   + +A P +A  VE KPYDDRL+RLSEILGAVH+LRELCSANEGQ WRDRMRE+++AEGS+ALRRA+LTR+FNQGY SYS+T+  C+ +AQ+A+ RF+ EG++++E L+++ P
Sbjct:   29 VTVGLPIAMPQTAAAVETKPYDDRLLRLSEILGAVHFLRELCSANEGQYWRDRMREIMDAEGSSALRRAKLTRAFNQGYRSYSRTYNTCSPSAQTAVMRFLKEGSELSEGLLKAFP 144          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: UPI0019AE720C (TIGR02301 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019AE720C)

HSP 1 Score: 152 bits (384), Expect = 3.520e-45
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 1
Query:   61 AIALAHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            A+A   P +A    KPYDDRL RLSEILGAVHYLRELC A EGQ WR+RM EL+++EGS ALR+A+LTRSFN+GY SYS+T+  C+ +AQSAI RF+ EGA IA+ LVRS+P
Sbjct:   18 AVATMLPAAAAPDGKPYDDRLFRLSEILGAVHYLRELCGAEEGQQWRERMAELVQSEGSTALRKAKLTRSFNKGYQSYSRTYNTCSPSAQSAINRFITEGATIADTLVRSVP 129          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: UPI001FCD0FC3 (TIGR02301 family protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI001FCD0FC3)

HSP 1 Score: 151 bits (382), Expect = 4.600e-45
Identity = 70/115 (60.87%), Postives = 95/115 (82.61%), Query Frame = 1
Query:   52 LVAAIALAHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            ++A +++A P +A    KPYDDRL RLSEILGAVHYLRELC A+EGQ WR+RM +L+++EG++ALR+A+LTRSFN+GY SYS+T+  C+ +AQ+ I RF+ EGA IA+ LVRS+P
Sbjct:    1 MLAGVSMALPAAAAPDSKPYDDRLFRLSEILGAVHYLRELCGADEGQLWRERMTDLLQSEGTSALRKAKLTRSFNKGYQSYSRTYNTCSPSAQNVINRFVTEGAAIADTLVRSVP 115          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: UPI001FD9E2B7 (TIGR02301 family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI001FD9E2B7)

HSP 1 Score: 152 bits (383), Expect = 7.480e-45
Identity = 80/131 (61.07%), Postives = 100/131 (76.34%), Query Frame = 1
Query:   19 RRLSCRTSALALVAAIAL-----AHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            RR S +   LAL AA++L     +  ++A    KPYDD+LMRL+EILGAVHYLRELCSAN+GQ WRDRM+EL++ EG  ALRRARLTRSFNQGY SY +T+  CT TAQS+I+RF+ EG QI + LV++ P
Sbjct:   12 RRPSIKGMLLALGAALSLVGGGASGAVAAPGDTKPYDDKLMRLAEILGAVHYLRELCSANDGQVWRDRMKELLDTEGGTALRRARLTRSFNQGYRSYRRTYVTCTPTAQSSIERFLAEGIQIGDGLVKNTP 142          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: F8J9W4_HYPSM (Uncharacterized protein n=2 Tax=Hyphomicrobium TaxID=81 RepID=F8J9W4_HYPSM)

HSP 1 Score: 151 bits (381), Expect = 1.070e-44
Identity = 73/129 (56.59%), Postives = 101/129 (78.29%), Query Frame = 1
Query:   10 RKCRRLSCRTSALALVAAIALAHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            R CR+L C+   + ++A  A+     A +  KPYDDRLMRLSEILGA+HYLRELC ANEGQ WRDRM +L+ AEGS ALRRA+LTR+FNQGY SYS+T+  C+ +AQ+AI RF++EG+++++ ++++ P
Sbjct:    3 RHCRKL-CQYLVMLMLALSAVGGQAFAASDSKPYDDRLMRLSEILGAIHYLRELCGANEGQYWRDRMHDLMNAEGSTALRRAKLTRAFNQGYRSYSRTYNTCSPSAQTAITRFLSEGSELSDGMLKAFP 130          
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Match: A0A2S5MDR5_HYPSQ (TIGR02301 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MDR5_HYPSQ)

HSP 1 Score: 151 bits (381), Expect = 1.370e-44
Identity = 76/138 (55.07%), Postives = 102/138 (73.91%), Query Frame = 1
Query:    7 MRKCRRLSCRTSA--------LALVAAIALAHPLSAQTVEKPYDDRLMRLSEILGAVHYLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTHKICTTTAQSAIQRFMNEGAQIAEVLVRSIP 396
            M +C++++ R  A        +A+  +     P+ A    KPYD++LMRLSEILGAVHYLRELC ANEGQ WRDRMR+LI+AE + ALRRARLTR+FNQGY SYS+T+  C+ +AQ+AI RF+ EGA+++E LV++ P
Sbjct:    1 MNQCQKMTSRKDAKRQAFCSIIAITISWLAVLPVQAAPDTKPYDEKLMRLSEILGAVHYLRELCGANEGQYWRDRMRDLIDAESATALRRARLTRAFNQGYRSYSRTYNTCSPSAQTAITRFLGEGAELSEGLVKAFP 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17397.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XS96_9HYPH2.750e-4970.00TIGR02301 family protein n=1 Tax=Hyphomicrobiales ... [more]
A0A109B9K1_HYPSL2.680e-4762.70Uncharacterized protein n=2 Tax=Hyphomicrobium sul... [more]
A0A433B4R5_HYPSQ5.880e-4658.33TIGR02301 family protein n=2 Tax=unclassified Hyph... [more]
A0A2W4KV70_9PROT1.440e-4558.91TIGR02301 family protein n=1 Tax=Proteobacteria ba... [more]
UPI001FE711DE2.790e-4562.07TIGR02301 family protein n=1 Tax=Hyphomicrobium me... [more]
UPI0019AE720C3.520e-4566.07TIGR02301 family protein n=1 Tax=Hyphomicrobium sp... [more]
UPI001FCD0FC34.600e-4560.87TIGR02301 family protein n=1 Tax=Hyphomicrobium sp... [more]
UPI001FD9E2B77.480e-4561.07TIGR02301 family protein n=1 Tax=Hyphomicrobium za... [more]
F8J9W4_HYPSM1.070e-4456.59Uncharacterized protein n=2 Tax=Hyphomicrobium Tax... [more]
A0A2S5MDR5_HYPSQ1.370e-4455.07TIGR02301 family protein n=1 Tax=Hyphomicrobium sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17397contigP-wetherbeei_contig17397:106..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog582899.Hden_1988
Preferred nameMA20_42075
PFAMsDUF2385
Model size399
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.7e-45
EggNOG OGsCOG5451@1|root,COG5451@2|Bacteria,1MYIV@1224|Proteobacteria,2UGCX@28211|Alphaproteobacteria,3N7DK@45401|Hyphomicrobiaceae
DescriptionProtein of unknown function (DUF2385)
Cds size393
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.2902818-CDS-P-wetherbeei_contig17397:105..4981683186116.2902818-CDS-P-wetherbeei_contig17397:105..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17397 106..498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.3009481-UTR-P-wetherbeei_contig17397:498..5041683186116.3009481-UTR-P-wetherbeei_contig17397:498..504Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17397 499..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17397.1.1prot_P-wetherbeei_contig17397.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17397 106..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17397.1.1

>prot_P-wetherbeei_contig17397.1.1 ID=prot_P-wetherbeei_contig17397.1.1|Name=mRNA_P-wetherbeei_contig17397.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MRKCRRLSCRTSALALVAAIALAHPLSAQTVEKPYDDRLMRLSEILGAVH
YLRELCSANEGQAWRDRMRELIEAEGSNALRRARLTRSFNQGYYSYSKTH
KICTTTAQSAIQRFMNEGAQIAEVLVRSIP*
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mRNA from alignment at P-wetherbeei_contig17397:106..504-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17397.1.1 ID=mRNA_P-wetherbeei_contig17397.1.1|Name=mRNA_P-wetherbeei_contig17397.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig17397:106..504- (Phaeothamnion wetherbeei SAG_119_79)
AATGTGATGAGGAAATGCAGGCGGCTAAGCTGCCGTACAAGCGCACTTGC GCTTGTTGCTGCGATAGCGCTCGCACATCCACTCTCCGCCCAGACCGTCG AAAAGCCATACGACGACCGGCTGATGCGGCTATCCGAAATCCTGGGCGCC GTTCACTATCTGCGCGAGTTGTGCAGTGCCAACGAAGGCCAGGCCTGGCG TGACCGGATGCGCGAATTGATCGAAGCCGAAGGCTCAAATGCCCTGCGGC GGGCCCGCCTGACGCGCAGCTTCAACCAGGGTTATTACAGCTACAGCAAG ACACACAAGATCTGCACGACGACGGCGCAGTCGGCAATCCAGCGCTTCAT GAACGAAGGTGCTCAAATTGCTGAGGTTCTCGTCCGCAGTATCCCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17397:106..504-

>mRNA_P-wetherbeei_contig17397.1.1 ID=mRNA_P-wetherbeei_contig17397.1.1|Name=mRNA_P-wetherbeei_contig17397.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig17397:106..504- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGAAATGCAGGCGGCTAAGCTGCCGTACAAGCGCACTTGCGCTTGT
TGCTGCGATAGCGCTCGCACATCCACTCTCCGCCCAGACCGTCGAAAAGC
CATACGACGACCGGCTGATGCGGCTATCCGAAATCCTGGGCGCCGTTCAC
TATCTGCGCGAGTTGTGCAGTGCCAACGAAGGCCAGGCCTGGCGTGACCG
GATGCGCGAATTGATCGAAGCCGAAGGCTCAAATGCCCTGCGGCGGGCCC
GCCTGACGCGCAGCTTCAACCAGGGTTATTACAGCTACAGCAAGACACAC
AAGATCTGCACGACGACGGCGCAGTCGGCAATCCAGCGCTTCATGAACGA
AGGTGCTCAAATTGCTGAGGTTCTCGTCCGCAGTATCCCATGA
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