mRNA_P-wetherbeei_contig17387.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17387.3.1
Unique NamemRNA_P-wetherbeei_contig17387.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17387.3.1 vs. uniprot
Match: UPI00198C853A (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00198C853A)

HSP 1 Score: 86.7 bits (213), Expect = 2.840e-20
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:   22 KTFAATLGILLLASTAGEASVRNFFAPVVDGSRIDNCLSGKASCGKPAADAFCVKEGFTESILFQREAASATRQLGS 252
            KT  A+L   LL+    +A+VR +FAP  +G R+D+CL+    CGKPAADAFC ++GF  S+LFQREA  +T +LG+
Sbjct:    2 KTLTASLAFFLLSGAFAQATVRTYFAPEQEGKRLDSCLTDAGDCGKPAADAFCQRQGFDTSLLFQREAMDSTIRLGT 78
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BLAST of mRNA_P-wetherbeei_contig17387.3.1 vs. uniprot
Match: A0A847ZWR5_9HYPH (Uncharacterized protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZWR5_9HYPH)

HSP 1 Score: 64.3 bits (155), Expect = 1.860e-11
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   22 KTFAATLGILLLA---STAGEASVRNFFAPVVDGSRIDNCLSGKASCGKPAADAFCVKEGFTESILFQREAASATRQL 246
            K   A L +L  +   ++  +AS R++  P  DG  I  CL+  ++CGKPAAD FC   G++ESILFQR+A +A   L
Sbjct:    2 KRLIAVLAVLAASGAVASMAQASTRSYSLPTDDGKAISACLADGSTCGKPAADQFCKMAGYSESILFQRQAVAAALVL 79
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BLAST of mRNA_P-wetherbeei_contig17387.3.1 vs. uniprot
Match: UPI0019041ED1 (hypothetical protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0019041ED1)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-8
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 NPEPEMFKTFAATLGILLLASTAGEASVRNFFAPVVDGSRIDNCLSGKASCGKPAADAFCVKEGFTESILFQR 219
            +P P +  T  +   +  + + A E + R +F P V G  +  C+S +ASCGKP+ADA+C   GF E+++F+R
Sbjct:    3 SPRPVLIATVLSFACLSAIPAQA-ENAARTYFNPQVYGKPVALCMSDRASCGKPSADAWCRDNGFAEALVFER 74
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BLAST of mRNA_P-wetherbeei_contig17387.3.1 vs. uniprot
Match: A0A6G6WM90_9HYPH (Uncharacterized protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WM90_9HYPH)

HSP 1 Score: 55.8 bits (133), Expect = 3.670e-8
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   73 EASVRNFFAPVVDGSRIDNCLSGKASCGKPAADAFCVKEGFTESILFQR 219
            ++++R FF P V G  +  C+S +ASCGKP ADA+C + GF E+++F+R
Sbjct:   26 DSTLRTFFNPQVYGKPVALCMSDRASCGKPTADAWCREHGFGEALVFER 74
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BLAST of mRNA_P-wetherbeei_contig17387.3.1 vs. uniprot
Match: UPI001BDEA38F (hypothetical protein n=1 Tax=Bradyrhizobium sp. SRL28 TaxID=2836178 RepID=UPI001BDEA38F)

HSP 1 Score: 49.3 bits (116), Expect = 3.970e-5
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   76 ASVRNFFAPVVDGSRIDNCLSGKASCGKPAADAFCVKEGFTES 204
            +S R F  PV  GSR+D C S    CGKPAADAFCV +GF  S
Sbjct:  101 SSNRVFANPVWRGSRLDVCKSFGKDCGKPAADAFCVSQGFRSS 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17387.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI00198C853A2.840e-2050.65Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A847ZWR5_9HYPH1.860e-1142.31Uncharacterized protein n=1 Tax=Phyllobacteriaceae... [more]
UPI0019041ED11.840e-836.99hypothetical protein n=1 Tax=Aestuariivirga sp. YI... [more]
A0A6G6WM90_9HYPH3.670e-846.94Uncharacterized protein n=1 Tax=Nordella sp. HKS 0... [more]
UPI001BDEA38F3.970e-558.14hypothetical protein n=1 Tax=Bradyrhizobium sp. SR... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17387contigP-wetherbeei_contig17387:1178..1432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1131814.JAFO01000001_gene3017
Model size255
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.65e-05
EggNOG OGs2EAPA@1|root,334RR@2|Bacteria,1N1K3@1224|Proteobacteria,2UDBG@28211|Alphaproteobacteria,3F03U@335928|Xanthobacteraceae
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.0144475-UTR-P-wetherbeei_contig17387:1177..11921683186116.0144475-UTR-P-wetherbeei_contig17387:1177..1192Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17387 1178..1192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.0245123-CDS-P-wetherbeei_contig17387:1192..14321683186116.0245123-CDS-P-wetherbeei_contig17387:1192..1432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17387 1193..1432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17387.3.1prot_P-wetherbeei_contig17387.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17387 1193..1432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17387.3.1

>prot_P-wetherbeei_contig17387.3.1 ID=prot_P-wetherbeei_contig17387.3.1|Name=mRNA_P-wetherbeei_contig17387.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MFKTFAATLGILLLASTAGEASVRNFFAPVVDGSRIDNCLSGKASCGKPA
ADAFCVKEGFTESILFQREAASATRQLGSE
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mRNA from alignment at P-wetherbeei_contig17387:1178..1432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17387.3.1 ID=mRNA_P-wetherbeei_contig17387.3.1|Name=mRNA_P-wetherbeei_contig17387.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig17387:1178..1432+ (Phaeothamnion wetherbeei SAG_119_79)
AATCCGGAGCCTGAAATGTTCAAGACCTTTGCCGCAACCCTGGGAATTCT
GTTGCTGGCGTCAACCGCCGGGGAAGCCTCGGTGCGCAATTTCTTTGCCC
CCGTTGTGGATGGCTCCCGCATCGATAACTGCCTGAGCGGCAAGGCCAGC
TGCGGCAAACCCGCCGCCGATGCCTTTTGCGTGAAGGAAGGTTTCACCGA
ATCCATCCTCTTCCAGCGTGAAGCCGCAAGTGCCACCCGCCAGTTGGGCT
CAGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17387:1178..1432+

>mRNA_P-wetherbeei_contig17387.3.1 ID=mRNA_P-wetherbeei_contig17387.3.1|Name=mRNA_P-wetherbeei_contig17387.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig17387:1178..1432+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCAAGACCTTTGCCGCAACCCTGGGAATTCTGTTGCTGGCGTCAAC
CGCCGGGGAAGCCTCGGTGCGCAATTTCTTTGCCCCCGTTGTGGATGGCT
CCCGCATCGATAACTGCCTGAGCGGCAAGGCCAGCTGCGGCAAACCCGCC
GCCGATGCCTTTTGCGTGAAGGAAGGTTTCACCGAATCCATCCTCTTCCA
GCGTGAAGCCGCAAGTGCCACCCGCCAGTTGGGCTCAGAA
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