mRNA_P-wetherbeei_contig1738.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1738.3.1
Unique NamemRNA_P-wetherbeei_contig1738.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A536WLV6_9PROT (Response regulator n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WLV6_9PROT)

HSP 1 Score: 200 bits (508), Expect = 4.110e-64
Identity = 95/129 (73.64%), Postives = 110/129 (85.27%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MP +PL RI Y EDDEDIQRIVRM+LER+GKMTV + +DPL+AI+ +K F+PDLVMLDWMMPGMDGPTL + M+++PETAA PVVFITAKAT +D  EL ALGAAG +SKPFSPKDLPDQLR IW  LP
Sbjct:    1 MPERPLVRICYVEDDEDIQRIVRMTLERVGKMTVEIVTDPLRAIDAMKAFRPDLVMLDWMMPGMDGPTLFRKMKQLPETAALPVVFITAKATQRDMEELLALGAAGTISKPFSPKDLPDQLRSIWAKLP 129
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A537A983_9PROT (Response regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A983_9PROT)

HSP 1 Score: 192 bits (487), Expect = 6.510e-61
Identity = 94/129 (72.87%), Postives = 106/129 (82.17%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MP +PL RI Y EDDEDIQRIVRMSLERIGKMTV V +DP+ A+  I  FKPDLVMLDWMMPGMDGPTL + M++ PET+A PVVFITAKAT +D  EL ALGAAG +SKPFSPKDLP+QLR IW  +P
Sbjct:    1 MPDRPLNRICYVEDDEDIQRIVRMSLERIGKMTVEVVTDPMVALGAITSFKPDLVMLDWMMPGMDGPTLFRRMKQQPETSALPVVFITAKATQRDMDELIALGAAGAISKPFSPKDLPEQLRAIWSKIP 129
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: UPI0019A963DF (Response regulator n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019A963DF)

HSP 1 Score: 189 bits (480), Expect = 7.590e-60
Identity = 92/129 (71.32%), Postives = 104/129 (80.62%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MPA+PL RI Y EDDEDIQRIVRMSLER+GKMTV V SDP+ AIE I  FKP+LVMLDWMMPGMDGPTL + MRE PET   PVVFITAKA+ ++  EL  +GA G +SKPFSPKDLP+QLR +W  LP
Sbjct:    1 MPARPLNRICYVEDDEDIQRIVRMSLERVGKMTVEVVSDPMVAIERIIAFKPELVMLDWMMPGMDGPTLFRKMRETPETKDLPVVFITAKASTRELDELKTMGAVGTISKPFSPKDLPEQLRAMWGALP 129
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A536T2Q0_9PROT (Response regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536T2Q0_9PROT)

HSP 1 Score: 187 bits (475), Expect = 4.380e-59
Identity = 95/129 (73.64%), Postives = 103/129 (79.84%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MP + LERI Y EDDEDIQRIVRMSLER+GKM V V SDP +AI  I  FKPDLVMLDWMMPGMDGPTL   M++ PETA  PVVFITAKAT +D  EL ALGAAG +SKPFSP+DLPDQLR IW  LP
Sbjct:    1 MPDRALERICYVEDDEDIQRIVRMSLERVGKMEVEVVSDPHQAIAVIARFKPDLVMLDWMMPGMDGPTLFGKMKQQPETATLPVVFITAKATQRDMEELVALGAAGTISKPFSPRDLPDQLRSIWAKLP 129
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A1F3YJ94_9PROT (Response regulatory domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YJ94_9PROT)

HSP 1 Score: 186 bits (472), Expect = 1.260e-58
Identity = 93/129 (72.09%), Postives = 103/129 (79.84%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MPA+ L RI Y EDDEDIQRIVRMSLER+GKMTV V  DPL AI+ I  FKPDLVMLDWMMPGMDGPTL + M E PET + PVVFITAKA+ ++  EL  LGAAG +SKPFSPKDLP+QLR IW  LP
Sbjct:    1 MPAQALNRICYVEDDEDIQRIVRMSLERVGKMTVEVVGDPLVAIDRIIAFKPDLVMLDWMMPGMDGPTLYRKMLETPETKSMPVVFITAKASQRELDELRKLGAAGTISKPFSPKDLPEQLRAIWQALP 129
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A0S8B828_9PROT (Chemotaxis protein CheY n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B828_9PROT)

HSP 1 Score: 182 bits (463), Expect = 3.050e-57
Identity = 85/129 (65.89%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MP +PLE++ Y EDDEDIQRIVRMSLER+GKM+V + S+  +AI+ +K FKPDLVMLDWMMP MDGPTL + M++ PE A+ PV+FITAKA+ ++  EL  LGA G +SKPFSPKDLPDQLRG+W  LP
Sbjct:    1 MPTRPLEKVLYVEDDEDIQRIVRMSLERVGKMSVEIVSNSSQAIDRMKAFKPDLVMLDWMMPEMDGPTLFRAMQQDPEVASLPVIFITAKASPRELEELVRLGAKGTISKPFSPKDLPDQLRGLWHALP 129
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A1F4EUH8_9PROT (Response regulatory domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EUH8_9PROT)

HSP 1 Score: 182 bits (462), Expect = 4.760e-57
Identity = 92/129 (71.32%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MPA PL RI Y EDDEDIQRIVR+SLERIGKM+V V +DP +AIE +  FKPDLV+LDWMMP +DGPTL + MRE PET   PVVFITAKA+ ++  EL ALGAAG +SKPFSPKDLPDQLR IW+ LP
Sbjct:    1 MPALPLSRICYVEDDEDIQRIVRLSLERIGKMSVDVIADPAEAIERMIAFKPDLVILDWMMPRVDGPTLCRKMRERPETRDLPVVFITAKASPRELDELRALGAAGTISKPFSPKDLPDQLRTIWNALP 129
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A1Q7SMA1_9PROT (Response regulatory domain-containing protein n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1Q7SMA1_9PROT)

HSP 1 Score: 181 bits (460), Expect = 8.450e-57
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MP +PL RI Y EDDEDIQRIVRMSLER+GKMTV +  DP +AIE +  F+PDLVMLDWMMP MDGPTL + M+   ET A PVVFITAKA+ +D  EL A+GAAG +SKPFSPKDLP+QLR IW  LP
Sbjct:    1 MPDRPLTRICYVEDDEDIQRIVRMSLERVGKMTVEIVGDPTRAIEAMTAFRPDLVMLDWMMPAMDGPTLFRQMQLRAETKALPVVFITAKASQRDLDELMAMGAAGAISKPFSPKDLPEQLRAIWAKLP 129
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BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A1F4FA62_9PROT (Response regulatory domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FA62_9PROT)

HSP 1 Score: 181 bits (460), Expect = 1.090e-56
Identity = 84/129 (65.12%), Postives = 104/129 (80.62%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            +P +PL+RI Y EDDEDIQRIVRMSLER+G+MTV +  DPLKA++ +  FKPDLVMLDWMMPGMDGPTL + M+  PET + PVVFITAKA+ ++  EL A+GA G +SKPF+PKDLP+QLR +W   P
Sbjct:    9 VPERPLQRICYVEDDEDIQRIVRMSLERVGRMTVEIVGDPLKALDAMTAFKPDLVMLDWMMPGMDGPTLFREMKRRPETTSLPVVFITAKASPRELEELKAMGALGAISKPFAPKDLPEQLRELWKKYP 137
[Close]
BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Match: A0A1F4F7H1_9PROT (Response regulatory domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F7H1_9PROT)

HSP 1 Score: 177 bits (449), Expect = 4.000e-55
Identity = 89/129 (68.99%), Postives = 99/129 (76.74%), Query Frame = 1 
Query:    1 MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVFKPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELAALGAAGIVSKPFSPKDLPDQLRGIWDTLP 387
            MP +PL RI Y EDDEDIQRIVRMSLER+GKMTV V  DP  AI+ I  FKPDLVMLDWMMP +DGP L + M++     A PVVFITAKA+ +D  EL A+GAAG VSKPFSPKDLPDQLR IW  LP
Sbjct:    1 MPDRPLNRICYVEDDEDIQRIVRMSLERVGKMTVEVVGDPTMAIDAINAFKPDLVMLDWMMPKLDGPALFRQMQQHAGIKALPVVFITAKASQRDLDELMAMGAAGTVSKPFSPKDLPDQLREIWKKLP 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1738.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A536WLV6_9PROT4.110e-6473.64Response regulator n=2 Tax=Betaproteobacteria bact... [more]
A0A537A983_9PROT6.510e-6172.87Response regulator n=1 Tax=Betaproteobacteria bact... [more]
UPI0019A963DF7.590e-6071.32Response regulator n=1 Tax=Candidatus Parcubacteri... [more]
A0A536T2Q0_9PROT4.380e-5973.64Response regulator n=1 Tax=Betaproteobacteria bact... [more]
A0A1F3YJ94_9PROT1.260e-5872.09Response regulatory domain-containing protein n=1 ... [more]
A0A0S8B828_9PROT3.050e-5765.89Chemotaxis protein CheY n=1 Tax=Betaproteobacteria... [more]
A0A1F4EUH8_9PROT4.760e-5771.32Response regulatory domain-containing protein n=2 ... [more]
A0A1Q7SMA1_9PROT8.450e-5768.99Response regulatory domain-containing protein n=5 ... [more]
A0A1F4FA62_9PROT1.090e-5665.12Response regulatory domain-containing protein n=1 ... [more]
A0A1F4F7H1_9PROT4.000e-5568.99Response regulatory domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1738contigP-wetherbeei_contig1738:3263..3652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1244869.H261_16488
PFAMsResponse_reg
Model size390
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.44e-33
EggNOG OGsCOG0745@1|root,COG0745@2|Bacteria,1MZAS@1224|Proteobacteria,2UBY6@28211|Alphaproteobacteria,2JT8D@204441|Rhodospirillales
DescriptioncheY-homologous receiver domain
Cds size390
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.7665765-CDS-P-wetherbeei_contig1738:3262..36521683186115.7665765-CDS-P-wetherbeei_contig1738:3262..3652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1738 3263..3652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1738.3.1prot_P-wetherbeei_contig1738.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1738 3263..3652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1738.3.1

>prot_P-wetherbeei_contig1738.3.1 ID=prot_P-wetherbeei_contig1738.3.1|Name=mRNA_P-wetherbeei_contig1738.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MPAKPLERIFYAEDDEDIQRIVRMSLERIGKMTVMVESDPLKAIEGIKVF
KPDLVMLDWMMPGMDGPTLLKTMREIPETAAYPVVFITAKATVKDHAELA
ALGAAGIVSKPFSPKDLPDQLRGIWDTLP*
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mRNA from alignment at P-wetherbeei_contig1738:3263..3652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1738.3.1 ID=mRNA_P-wetherbeei_contig1738.3.1|Name=mRNA_P-wetherbeei_contig1738.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig1738:3263..3652- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGCAAAACCGCTCGAACGCATCTTCTACGCCGAGGACGACGAGGA
CATCCAGCGCATCGTGCGGATGTCGCTCGAGAGGATAGGCAAGATGACCG
TCATGGTCGAGAGCGACCCGCTCAAGGCCATCGAAGGCATCAAGGTGTTC
AAGCCCGACCTCGTGATGCTCGACTGGATGATGCCGGGCATGGACGGCCC
GACACTGCTGAAGACGATGCGCGAGATCCCGGAAACGGCGGCCTACCCGG
TGGTCTTCATCACCGCCAAGGCCACCGTCAAGGATCACGCCGAGCTCGCG
GCCCTGGGCGCGGCCGGCATCGTCTCCAAGCCCTTCTCCCCGAAGGACCT
GCCGGACCAGCTCAGGGGAATCTGGGATACGCTGCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1738:3263..3652-

>mRNA_P-wetherbeei_contig1738.3.1 ID=mRNA_P-wetherbeei_contig1738.3.1|Name=mRNA_P-wetherbeei_contig1738.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig1738:3263..3652- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGCAAAACCGCTCGAACGCATCTTCTACGCCGAGGACGACGAGGA
CATCCAGCGCATCGTGCGGATGTCGCTCGAGAGGATAGGCAAGATGACCG
TCATGGTCGAGAGCGACCCGCTCAAGGCCATCGAAGGCATCAAGGTGTTC
AAGCCCGACCTCGTGATGCTCGACTGGATGATGCCGGGCATGGACGGCCC
GACACTGCTGAAGACGATGCGCGAGATCCCGGAAACGGCGGCCTACCCGG
TGGTCTTCATCACCGCCAAGGCCACCGTCAAGGATCACGCCGAGCTCGCG
GCCCTGGGCGCGGCCGGCATCGTCTCCAAGCCCTTCTCCCCGAAGGACCT
GCCGGACCAGCTCAGGGGAATCTGGGATACGCTGCCCTGA
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