mRNA_P-wetherbeei_contig17367.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17367.1.1
Unique NamemRNA_P-wetherbeei_contig17367.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A1F3YG62_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YG62_9PROT)

HSP 1 Score: 176 bits (447), Expect = 2.010e-53
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLRSA+AW   GHRVT  TIVKTWGSAPRPVGAL+V+RDDG V GS+SGGCVEDDLIEKV+AG +AKD+P + TYGVTNEEA RWGLPCGGTL +VL
Sbjct:    1 MDSVDIEVLRSAEAWRKAGHRVTFGTIVKTWGSAPRPVGALVVVRDDGQVVGSLSGGCVEDDLIEKVRAGAVAKDRPQVITYGVTNEEATRWGLPCGGTLVVVL 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A521YGV1_9PROT (XdhC family protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YGV1_9PROT)

HSP 1 Score: 172 bits (435), Expect = 8.110e-51
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLR+AQAW+ GGHRV L TIVKTWGSAPRPVGA++ +R DG V GSVSGGCVE+DLIEK+KA  +A +KP + TYGVTNEEA RWGLPCGGTLQ+V+
Sbjct:    1 MDSVDIEVLRTAQAWLTGGHRVALGTIVKTWGSAPRPVGAMVAVRGDGQVVGSVSGGCVEEDLIEKIKARSIAAEKPQLVTYGVTNEEATRWGLPCGGTLQVVM 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A536SKC9_9PROT (XdhC_CoxI domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SKC9_9PROT)

HSP 1 Score: 165 bits (418), Expect = 2.780e-50
Identity = 78/104 (75.00%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVD+EV+RSA  W   GHR TL T+V TWGSAPRPVGA+LVIRDDG V GSVSGGCVEDDLI+KVKA  +A DKP +TTYGVT E+A R+GLPCGGTLQ+VL
Sbjct:    1 MDSVDLEVVRSALKWTESGHRATLGTVVHTWGSAPRPVGAMLVIRDDGQVMGSVSGGCVEDDLIDKVKAKAIAADKPEVTTYGVTQEQATRYGLPCGGTLQIVL 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A1F4AX31_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4AX31_9PROT)

HSP 1 Score: 169 bits (427), Expect = 1.350e-49
Identity = 77/104 (74.04%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLRSA+AW   GHRVTL TIVKTWGSAPRPVGA++ IRDDG V+GSVSGGCVEDDLIE+V+A  +A ++P + TYG++NE+A RWGLPCGGTL++VL
Sbjct:    1 MDSVDIEVLRSAEAWRRAGHRVTLGTIVKTWGSAPRPVGAMVAIRDDGQVAGSVSGGCVEDDLIERVRAHAVAAERPQLVTYGISNEDATRWGLPCGGTLEVVL 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A1F4F5X8_9PROT (Uncharacterized protein n=6 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F5X8_9PROT)

HSP 1 Score: 168 bits (426), Expect = 1.910e-49
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLR+A+ W   GHRVTL TIVKTWGSAPRP+GA++ IRDDG V+GSVSGGCVEDDLIEKV+A  LA  KP + TYGV+NE+A RWGLPCGGTLQ+VL
Sbjct:    1 MDSVDIEVLRNAEDWRKAGHRVTLGTIVKTWGSAPRPIGAMVAIRDDGQVTGSVSGGCVEDDLIEKVRAKALAAAKPQLVTYGVSNEDATRWGLPCGGTLQVVL 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A0S8B5A2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B5A2_9PROT)

HSP 1 Score: 168 bits (425), Expect = 2.840e-49
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLRSA+AW   G R TL TIVKTWGSAPRPVGA++VIRDDGLV GSVSGGCVEDDLIEKV+A  +A ++P + TYGVTNEEA R+GLPCGGTLQ+VL
Sbjct:    1 MDSVDIEVLRSAEAWRKEGRRATLGTIVKTWGSAPRPVGAMVVIRDDGLVIGSVSGGCVEDDLIEKVRAQAVAAERPQLVTYGVTNEEATRYGLPCGGTLQVVL 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A536SB35_9PROT (XdhC_CoxI domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SB35_9PROT)

HSP 1 Score: 161 bits (408), Expect = 1.290e-48
Identity = 75/104 (72.12%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLR+A+ W   GHR  L TIV+TWGSAPRP+GA++ IRDDG + GSVSGGCVEDDL+EKVK    A  KP + TYGVTNEEA RWGLPCGGTL+LVL
Sbjct:    1 MDSVDIEVLRTAEEWRKNGHRAALGTIVRTWGSAPRPIGAMVAIRDDGQIVGSVSGGCVEDDLVEKVKEKFAAAKKPELVTYGVTNEEATRWGLPCGGTLELVL 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A1F4EY13_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EY13_9PROT)

HSP 1 Score: 165 bits (418), Expect = 3.030e-48
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLR+A+AW   G R TL TI+KTWGSAPRPVGA++ IRDDG VSGSVSGGCVEDDLI+KVK+  +A   P + TYGVTNEEA RWGLPCGGTLQLVL
Sbjct:    1 MDSVDIEVLRTAEAWRMAGRRGTLGTIIKTWGSAPRPVGAMVAIRDDGQVSGSVSGGCVEDDLIDKVKSKAVAAKAPQLITYGVTNEEATRWGLPCGGTLQLVL 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A537CL52_9PROT (XdhC family protein n=4 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CL52_9PROT)

HSP 1 Score: 165 bits (417), Expect = 4.180e-48
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLR+A+AW   G RV L TIVKTWGSAPRPVGA++ IRDDG V GSVSGGCVEDDLI+KVK+  +A  KP + TYGVTNEEA RWGLPCGGTLQLVL
Sbjct:    1 MDSVDIEVLRTAEAWRKQGRRVALGTIVKTWGSAPRPVGAMVAIRDDGQVVGSVSGGCVEDDLIDKVKSRVVAATKPELVTYGVTNEEATRWGLPCGGTLQLVL 104          
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Match: A0A536SFC0_9PROT (XdhC family protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SFC0_9PROT)

HSP 1 Score: 162 bits (410), Expect = 6.120e-48
Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLVSGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTLQLVL 312
            MDSVDIEVLR+A+AW   GH V L TIVKTWGSAPRPVGA++ IRDDG ++GSVSGGCVEDDL+EKVK       KP + TYGVTNEEA RWGLPCGGTLQLV+
Sbjct:    1 MDSVDIEVLRTAEAWRKQGHAVALGTIVKTWGSAPRPVGAMVAIRDDGQITGSVSGGCVEDDLVEKVKEKFARAAKPELVTYGVTNEEATRWGLPCGGTLQLVV 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17367.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YG62_9PROT2.010e-5379.81Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521YGV1_9PROT8.110e-5175.96XdhC family protein n=2 Tax=unclassified Betaprote... [more]
A0A536SKC9_9PROT2.780e-5075.00XdhC_CoxI domain-containing protein (Fragment) n=1... [more]
A0A1F4AX31_9PROT1.350e-4974.04Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4F5X8_9PROT1.910e-4975.96Uncharacterized protein n=6 Tax=unclassified Betap... [more]
A0A0S8B5A2_9PROT2.840e-4977.88Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A536SB35_9PROT1.290e-4872.12XdhC_CoxI domain-containing protein (Fragment) n=1... [more]
A0A1F4EY13_9PROT3.030e-4875.96Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537CL52_9PROT4.180e-4876.92XdhC family protein n=4 Tax=Betaproteobacteria bac... [more]
A0A536SFC0_9PROT6.120e-4874.04XdhC family protein (Fragment) n=1 Tax=Betaproteob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17367contigP-wetherbeei_contig17367:2..313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1158292.JPOE01000002_gene2291
PFAMsXdhC_C,XdhC_CoxI
Model size312
Max annot lvl28216|Betaproteobacteria
KEGG koko:K07402
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.73e-44
EggNOG OGsCOG1975@1|root,COG1975@2|Bacteria,1MXKU@1224|Proteobacteria,2VHIK@28216|Betaproteobacteria,1KIZ4@119065|unclassified Burkholderiales
DescriptionXdhC Rossmann domain
Cds size312
COG categoryO
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.48069-CDS-P-wetherbeei_contig17367:1..3131683186115.48069-CDS-P-wetherbeei_contig17367:1..313Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17367 2..313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17367.1.1prot_P-wetherbeei_contig17367.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17367 2..313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17367.1.1

>prot_P-wetherbeei_contig17367.1.1 ID=prot_P-wetherbeei_contig17367.1.1|Name=mRNA_P-wetherbeei_contig17367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MDSVDIEVLRSAQAWMAGGHRVTLATIVKTWGSAPRPVGALLVIRDDGLV
SGSVSGGCVEDDLIEKVKAGGLAKDKPAITTYGVTNEEANRWGLPCGGTL
QLVL
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mRNA from alignment at P-wetherbeei_contig17367:2..313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17367.1.1 ID=mRNA_P-wetherbeei_contig17367.1.1|Name=mRNA_P-wetherbeei_contig17367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig17367:2..313- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATAGCGTAGACATCGAAGTCCTCCGCAGCGCACAGGCGTGGATGGC CGGCGGCCACCGCGTCACGCTCGCCACGATCGTGAAGACCTGGGGCTCGG CCCCGCGGCCCGTGGGCGCGCTGCTCGTGATCCGCGACGACGGCCTCGTG TCGGGCTCCGTGTCCGGGGGGTGCGTCGAGGACGACCTGATCGAGAAGGT GAAGGCGGGCGGCCTCGCGAAGGACAAGCCCGCCATCACCACCTACGGCG TCACCAACGAGGAGGCCAACCGCTGGGGCCTGCCTTGCGGCGGCACCCTG CAGCTGGTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17367:2..313-

>mRNA_P-wetherbeei_contig17367.1.1 ID=mRNA_P-wetherbeei_contig17367.1.1|Name=mRNA_P-wetherbeei_contig17367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig17367:2..313- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATAGCGTAGACATCGAAGTCCTCCGCAGCGCACAGGCGTGGATGGC
CGGCGGCCACCGCGTCACGCTCGCCACGATCGTGAAGACCTGGGGCTCGG
CCCCGCGGCCCGTGGGCGCGCTGCTCGTGATCCGCGACGACGGCCTCGTG
TCGGGCTCCGTGTCCGGGGGGTGCGTCGAGGACGACCTGATCGAGAAGGT
GAAGGCGGGCGGCCTCGCGAAGGACAAGCCCGCCATCACCACCTACGGCG
TCACCAACGAGGAGGCCAACCGCTGGGGCCTGCCTTGCGGCGGCACCCTG
CAGCTGGTGCTG
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