mRNA_P-wetherbeei_contig17355.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17355.2.1
Unique NamemRNA_P-wetherbeei_contig17355.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: A0A3N5FBX6_9BURK (Polar amino acid ABC transporter substrate-binding protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3N5FBX6_9BURK)

HSP 1 Score: 400 bits (1029), Expect = 1.880e-138
Identity = 192/262 (73.28%), Postives = 222/262 (84.73%), Query Frame = 1
Query:   55 SASVLAQQPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKCS 840
            +A  +  QPI T VDATFAPHAM KLGGG+EGFN+DL NEIA+RL RPI IE TQFSGLIPGLNAKKYD++ APTTVT ERA+ALLFTEGYLDTD+ F+ KK+D +IK+L++LKGKT+SVNKGSAY++WAK NAEKYGFK+D+YDTNADAVQAVLSGRA  NLAGNTV AWAAKQNP++KT+  + TGLVWA+PFR DD   R++VSMVIKCMK DG +  ++EKWFG K  ADSS  K   GHGVPNM GYDATPVALKCS
Sbjct:   29 AAGTVHAQPIKTGVDATFAPHAMAKLGGGMEGFNIDLGNEIARRLGRPIEIEGTQFSGLIPGLNAKKYDFVLAPTTVTKERAEALLFTEGYLDTDYLFVQKKADADIKTLDDLKGKTVSVNKGSAYESWAKANAEKYGFKFDIYDTNADAVQAVLSGRAGANLAGNTVAAWAAKQNPLIKTSLLVPTGLVWAIPFRKDDVENRNKVSMVIKCMKADGTIGKMHEKWFGAKAAADSSAMKPVAGHGVPNMPGYDATPVALKCS 290          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: A0A536WQ00_9PROT (Transporter substrate-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WQ00_9PROT)

HSP 1 Score: 400 bits (1027), Expect = 2.310e-138
Identity = 195/269 (72.49%), Postives = 223/269 (82.90%), Query Frame = 1
Query:   34 FLATLALSASVLAQQPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKCS 840
            FL  L  + + LAQQPI T +DATFAPHAMPK GGG+EGFN+DLANE+AKR+ RPI IE T+FS LIPGLNAKKYD++ APTTVTPERAKA+LF+EGY++TD+ FL KK+D +IK LE+LKGKTI+VNKGSAY+TWAK NAEKYGFKYDVY TNADAVQAVLSGRA  N+AG+TVV WAAKQNP VK TY  KTGLVWA+PFR DDK GR QV+ V+KCMK DG +A LYEKWFG KP  DS   K+APGHGVP+M GYD  P   KCS
Sbjct:    8 FLVVLFAAGTALAQQPIRTGIDATFAPHAMPKPGGGLEGFNIDLANELAKRMGRPIQIEGTEFSALIPGLNAKKYDFLIAPTTVTPERAKAMLFSEGYMETDYLFLQKKADKDIKGLEDLKGKTITVNKGSAYETWAKANAEKYGFKYDVYGTNADAVQAVLSGRADANMAGHTVVLWAAKQNPAVKATYLYKTGLVWAMPFRLDDKEGRAQVNNVLKCMKLDGTVARLYEKWFGIKPAKDSWVYKVAPGHGVPDMPGYDPGPYPPKCS 276          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: A0A1G6M966_9BURK (Amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Variovorax sp. CF079 TaxID=1882774 RepID=A0A1G6M966_9BURK)

HSP 1 Score: 377 bits (969), Expect = 2.120e-129
Identity = 178/262 (67.94%), Postives = 214/262 (81.68%), Query Frame = 1
Query:   55 SASVLAQQPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKCS 840
            SA+     P+ T VDATFAPHAM KLGGG++GFN++L  E+A+R  R + IE T+FSGL+PGLNAKKYD+I AP TVTPERAKA+LFTEGYLDTD+ F++KK    I +LEELKGKTI+VNKGSAY+ WAK+NA+KYGF +DVY TNADAVQAV SGRA  NLAGNTV  WAAKQNP V+T+YT+KTGLVWA+ FRADDK+GR+  SM +KCMKQDG +A L EKWFG +P A ++  K+APGHGVP ++GYDATPV   CS
Sbjct:   24 SATAQTGAPLKTGVDATFAPHAMVKLGGGLQGFNIELGEELARREGRKLEIEGTEFSGLVPGLNAKKYDFILAPVTVTPERAKAMLFTEGYLDTDYTFVIKKGTAPIAALEELKGKTIAVNKGSAYENWAKDNAQKYGFSFDVYGTNADAVQAVQSGRAFANLAGNTVAGWAAKQNPAVQTSYTVKTGLVWALAFRADDKAGRNAASMALKCMKQDGTVARLAEKWFGARPDASATAVKLAPGHGVPGLEGYDATPVTPSCS 285          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: A0A516H1D6_9PROT (Transporter substrate-binding domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H1D6_9PROT)

HSP 1 Score: 375 bits (962), Expect = 2.140e-128
Identity = 178/255 (69.80%), Postives = 211/255 (82.75%), Query Frame = 1
Query:   76 QPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKCS 840
            Q + T VDATFAPHAM KLGGG++GFN++L  E+AKR+ + + +E T+FSGLIPGLNAKKYD++ AP TVTPERAK LLFTEGYL+TDF F+ KKS P IKSL++LKGKTI+VNKGSAY+TW ++NA KYGFKYDVY +N+DA+QAV SGRA  NL GNTV AWAAKQN  VKT+YTI TGLVWA+ FR DDK+GRD  SM +KCMK+DG +A   EKWFG KP  D++   IAPGHGVPNM+GYDATPV LKCS
Sbjct:   27 QVLKTGVDATFAPHAMVKLGGGLQGFNIELGEEMAKRMGKKLEVEGTEFSGLIPGLNAKKYDFVLAPVTVTPERAKTLLFTEGYLNTDFTFVEKKSAPGIKSLDDLKGKTIAVNKGSAYETWTRDNAAKYGFKYDVYGSNSDAIQAVQSGRADANLGGNTVSAWAAKQNQEVKTSYTITTGLVWALAFRGDDKAGRDAASMALKCMKKDGFVAKAAEKWFGFKPGPDAAAVVIAPGHGVPNMEGYDATPVTLKCS 281          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: A0A6N1XBK5_9BURK (Transporter substrate-binding domain-containing protein n=2 Tax=Acidovorax TaxID=12916 RepID=A0A6N1XBK5_9BURK)

HSP 1 Score: 372 bits (956), Expect = 1.570e-127
Identity = 179/262 (68.32%), Postives = 214/262 (81.68%), Query Frame = 1
Query:   55 SASVLAQQPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKCS 840
            S++ LAQ P+ +AVDATFAPHAM KLGGG++GFNVDL  E+AKRL R I IE  +FSGL+PGLN+K+YD++ AP TVTPERAK+LLFTEGYLDTD+ FL  K+ P +  LE+LKGKT++VNKGS Y+ WA++NA +YGFK+DVY  NADAVQAV SGRA  NLAG TVVAWAAKQNP +KT+YTIKTGLVWA+PFRADDK+GRD  S  +KCMKQDG +A L  KWFG +P AD +  KIAPG GVP  +GYDATPV  KC+
Sbjct:   17 SSAALAQAPLRSAVDATFAPHAMAKLGGGVQGFNVDLGEELAKRLGRKIEIEGAEFSGLVPGLNSKRYDFLVAPVTVTPERAKSLLFTEGYLDTDYTFLGTKAAPAVTRLEDLKGKTLAVNKGSNYEGWARDNAARYGFKFDVYGANADAVQAVQSGRADYNLAGTTVVAWAAKQNPNLKTSYTIKTGLVWALPFRADDKAGRDAASNALKCMKQDGTIAKLAVKWFGFQPGADDAAVKIAPGTGVPGTEGYDATPVTPKCA 278          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: UPI0013722184 (transporter substrate-binding domain-containing protein n=1 Tax=Achromobacter aestuarii TaxID=2511204 RepID=UPI0013722184)

HSP 1 Score: 371 bits (953), Expect = 6.160e-127
Identity = 179/277 (64.62%), Postives = 223/277 (80.51%), Query Frame = 1
Query:   10 RLSRIALPFLATLALSASVLAQQPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKCS 840
            R  R+ L  L + A +++  A +P+ T VDATFAPHAMPKLGGG++GFN++L   IAK+L   I IE T+++ LIPGLNAKKYD++ APTTVTPERAKALLF+EGYL+TD+ F+V K  P++ SLEELKGKT++VNKGSAY+ WA++NA KYGFKYDVY TNADA+QAV SGRA TNLAGNTV AWAAKQNP V+TT TI TGLVWA+ FR DDK+GRD+VSM +KC+KQDG ++ L +KWFG  P A ++   I PG GVP++ GYDATPV L+C+
Sbjct:   10 RAGRVGLALLMSGACASAAWAAKPLVTGVDATFAPHAMPKLGGGLDGFNIELGQAIAKKLGTTIEIEGTEYAALIPGLNAKKYDFVLAPTTVTPERAKALLFSEGYLNTDYTFVVAKKAPDLTSLEELKGKTVAVNKGSAYENWARDNAAKYGFKYDVYATNADAIQAVQSGRADTNLAGNTVSAWAAKQNPAVRTTMTIPTGLVWALAFRLDDKAGRDRVSMALKCLKQDGTVSKLAQKWFGFTPAAGTAAVTIVPGQGVPDLPGYDATPVKLECA 286          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: I3CSQ1_9BURK (Amino acid ABC transporter solute-binding protein n=13 Tax=Herbaspirillum TaxID=963 RepID=I3CSQ1_9BURK)

HSP 1 Score: 369 bits (948), Expect = 3.940e-126
Identity = 176/263 (66.92%), Postives = 210/263 (79.85%), Query Frame = 1
Query:   52 LSASVLAQQ-PISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKC 837
            LSA  +AQ  P+ T VDATFAPHAM KLGGG++GFN+DL  E+A+RL R I IE T+FSGL+PGLNAKKYD++ AP T TPERAK++LFTEGYLDTD+ F++KK    I +LE+LKGKTISVNKGSAY+ WA++NA KYGFKYDVY  NADAVQAV SGRA  NLAG+TV AWAAKQNP V+T+YT+KTGLVWA+ FR DDK+GRD   M +KCMKQDG L  + +KWFG  P  D++  K+  G GVP +DGYD TPV LKC
Sbjct:   27 LSAGAMAQSGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRKIEIEGTEFSGLVPGLNAKKYDFVLAPVTATPERAKSMLFTEGYLDTDYTFVIKKGAAPIHALEDLKGKTISVNKGSAYELWARDNAPKYGFKYDVYGNNADAVQAVQSGRADANLAGSTVAAWAAKQNPAVQTSYTVKTGLVWALAFRLDDKAGRDAAGMALKCMKQDGTLGKIAQKWFGYTPAPDATVVKVGVGQGVPGLDGYDPTPVTLKC 289          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: A0A7W8KQC7_9BURK (Polar amino acid transport system substrate-binding protein n=3 Tax=Herbaspirillum TaxID=963 RepID=A0A7W8KQC7_9BURK)

HSP 1 Score: 369 bits (947), Expect = 5.590e-126
Identity = 178/279 (63.80%), Postives = 215/279 (77.06%), Query Frame = 1
Query:    4 SMRLSRIALPFLATLALSASVLAQQPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKCS 840
            S+  S +A   + +LA + +    +P+ T VDATFAPHAM KLGGG++GFN+DL  E+A+RL R I IE T+FSGL+PGLNAKKYD++ AP T TPER+KA+LFTEGYLDTD+ F++KK    IK LEELKGKTISVNKGSAY+ WA++NA KYGFKYDVY  NADAVQAV SGRA  NLAG+TV AWAAKQNP V+TTYT+KTGLVWA+ FR DDK+GRD     +KCMKQDG L  + +KWFG  P  D++  K+  G GVP +DGYD TPV  KCS
Sbjct:   12 SLNCSLLAAAAVMSLAATGACAQAEPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRKIEIEGTEFSGLVPGLNAKKYDFVLAPVTATPERSKAMLFTEGYLDTDYTFVIKKGGAAIKGLEELKGKTISVNKGSAYEMWARDNAPKYGFKYDVYGNNADAVQAVQSGRADANLAGSTVAAWAAKQNPAVQTTYTVKTGLVWALAFRLDDKAGRDAAGNALKCMKQDGTLGKIAQKWFGYTPAPDATVVKVGVGQGVPGLDGYDPTPVTPKCS 290          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: A0A1W6YRF3_9BORD (Polar amino acid ABC transporter substrate-binding protein n=2 Tax=Bordetella genomosp. 8 TaxID=1416806 RepID=A0A1W6YRF3_9BORD)

HSP 1 Score: 366 bits (939), Expect = 7.200e-125
Identity = 174/268 (64.93%), Postives = 215/268 (80.22%), Query Frame = 1
Query:   34 FLATLALSASVLAQQPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKC 837
            FL   A   +  + QP+ T VDATFAPHAMPKL GG++GFN+DL   +AK+L   +NIE T++S LIPGLNAKKYD++ APTT TPERAK+LLF+EGYL+TD+ FLV KS P+I  L++LKGKTI+VNKGSAY++WA +NAEKYGFKYDVY +NADAVQAV SGRA  NLAGNTV AWAAKQNP VK TYTI+TGLVWA+ FR DDK+GRD++S  +KC+KQ+G ++ L +KWFG KP A S+ A +  G GVP ++GYD TPV+L C
Sbjct:   16 FLLAAACCGTAWSAQPLVTGVDATFAPHAMPKLAGGLQGFNIDLGEALAKQLGTTVNIEGTEYSALIPGLNAKKYDFVLAPTTATPERAKSLLFSEGYLNTDYTFLVAKSKPDITGLQDLKGKTIAVNKGSAYESWAHDNAEKYGFKYDVYASNADAVQAVQSGRADANLAGNTVTAWAAKQNPAVKATYTIQTGLVWALAFRKDDKAGRDRISTALKCLKQNGTVSALAQKWFGFKPAAGSAAATVGVGQGVPGLEGYDPTPVSLHC 283          
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Match: A0A246PZ20_9BURK (Polar amino acid ABC transporter substrate-binding protein n=1 Tax=Achromobacter sp. HZ28 TaxID=2015171 RepID=A0A246PZ20_9BURK)

HSP 1 Score: 365 bits (938), Expect = 1.060e-124
Identity = 181/282 (64.18%), Postives = 218/282 (77.30%), Query Frame = 1
Query:   19 RIALPFLATLALSASVLA---------QQPISTAVDATFAPHAMPKLGGGIEGFNVDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKALLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNAEKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYTIKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPADSSTAKIAPGHGVPNMDGYDATPVALKC 837
            ++ +PF     +S +VLA           P+ TAVD+TFAPHAM KL GG++GFNVDL  EIAKRL R I IEP +FSGL+PGLN+++YD++ AP TVTPERAK LLFTEGYLDTD+ FL KK  P +++LE+LKGK I+VNKGS Y++WAK+NAEKYGF+YDVY  NADAVQAVL+GRA  NLAG TVVAWAAKQNP + T+YTIKTGLVWA+ FR DD+ GR QVS V+KCMKQDG ++ L +KWFG  P  D    +IAPG GVP+MDGYDAT V  KC
Sbjct:    2 KVLMPFFRRCVVSGAVLAGCLGQAHAESAPLRTAVDSTFAPHAMAKLDGGVQGFNVDLGQEIAKRLGREIKIEPAEFSGLVPGLNSRRYDFLIAPVTVTPERAKTLLFTEGYLDTDYTFLEKKDAPALQNLEQLKGKVIAVNKGSNYESWAKDNAEKYGFRYDVYGGNADAVQAVLAGRADYNLAGTTVVAWAAKQNPRLATSYTIKTGLVWALAFRKDDREGRQQVSNVLKCMKQDGTVSALAKKWFGFAPKPDDWAVRIAPGTGVPDMDGYDATLVTPKC 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17355.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5FBX6_9BURK1.880e-13873.28Polar amino acid ABC transporter substrate-binding... [more]
A0A536WQ00_9PROT2.310e-13872.49Transporter substrate-binding domain-containing pr... [more]
A0A1G6M966_9BURK2.120e-12967.94Amino acid ABC transporter substrate-binding prote... [more]
A0A516H1D6_9PROT2.140e-12869.80Transporter substrate-binding domain-containing pr... [more]
A0A6N1XBK5_9BURK1.570e-12768.32Transporter substrate-binding domain-containing pr... [more]
UPI00137221846.160e-12764.62transporter substrate-binding domain-containing pr... [more]
I3CSQ1_9BURK3.940e-12666.92Amino acid ABC transporter solute-binding protein ... [more]
A0A7W8KQC7_9BURK5.590e-12663.80Polar amino acid transport system substrate-bindin... [more]
A0A1W6YRF3_9BORD7.200e-12564.93Polar amino acid ABC transporter substrate-binding... [more]
A0A246PZ20_9BURK1.060e-12464.18Polar amino acid ABC transporter substrate-binding... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17355contigP-wetherbeei_contig17355:576..1418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog864073.HFRIS_005858
PFAMsSBP_bac_3
Model size843
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02030
KEGG TC3.A.1.3
KEGG ModuleM00236
Hectar predicted targeting categorychloroplast
Exons1
Evalue1.8e-128
EggNOG OGsCOG0834@1|root,COG0834@2|Bacteria,1MV3Q@1224|Proteobacteria,2VJ9K@28216|Betaproteobacteria
Descriptionbelongs to the bacterial solute-binding protein 3 family
Cds size837
COG categoryET
BRITEko00000,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.1951149-UTR-P-wetherbeei_contig17355:575..5811683186115.1951149-UTR-P-wetherbeei_contig17355:575..581Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17355 576..581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.2035034-CDS-P-wetherbeei_contig17355:581..14181683186115.2035034-CDS-P-wetherbeei_contig17355:581..1418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17355 582..1418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17355.2.1prot_P-wetherbeei_contig17355.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17355 582..1418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17355.2.1

>prot_P-wetherbeei_contig17355.2.1 ID=prot_P-wetherbeei_contig17355.2.1|Name=mRNA_P-wetherbeei_contig17355.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=279bp
MRLSRIALPFLATLALSASVLAQQPISTAVDATFAPHAMPKLGGGIEGFN
VDLANEIAKRLKRPINIEPTQFSGLIPGLNAKKYDWIAAPTTVTPERAKA
LLFTEGYLDTDFQFLVKKSDPEIKSLEELKGKTISVNKGSAYDTWAKNNA
EKYGFKYDVYDTNADAVQAVLSGRASTNLAGNTVVAWAAKQNPMVKTTYT
IKTGLVWAVPFRADDKSGRDQVSMVIKCMKQDGALATLYEKWFGGKPPAD
SSTAKIAPGHGVPNMDGYDATPVALKCS*
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mRNA from alignment at P-wetherbeei_contig17355:576..1418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17355.2.1 ID=mRNA_P-wetherbeei_contig17355.2.1|Name=mRNA_P-wetherbeei_contig17355.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig17355:576..1418+ (Phaeothamnion wetherbeei SAG_119_79)
ACCTCCATGCGACTTTCCCGAATCGCCCTGCCTTTCCTGGCCACCCTGGC CTTGAGTGCCTCGGTCCTTGCCCAACAGCCGATCTCGACGGCCGTTGATG CCACGTTCGCCCCACATGCCATGCCCAAGCTGGGCGGCGGCATCGAAGGC TTCAATGTCGACCTCGCCAACGAGATCGCCAAACGCCTCAAGCGCCCGAT CAACATCGAGCCGACACAATTTTCGGGCCTGATCCCCGGCCTCAACGCCA AGAAATACGACTGGATCGCGGCACCCACCACCGTCACGCCGGAACGCGCC AAGGCACTGCTGTTCACCGAGGGCTATCTCGACACCGACTTCCAGTTCTT GGTCAAGAAGAGCGACCCGGAAATCAAGTCGCTTGAGGAACTCAAGGGCA AGACCATATCGGTAAACAAGGGGTCTGCCTATGACACCTGGGCCAAGAAC AACGCCGAGAAATACGGCTTCAAATACGACGTCTACGACACCAATGCCGA CGCCGTGCAGGCGGTGCTGTCCGGCCGCGCCAGTACCAACCTTGCCGGTA ATACCGTCGTGGCATGGGCTGCCAAGCAGAATCCGATGGTCAAGACCACC TACACGATCAAGACCGGCCTGGTGTGGGCGGTACCGTTCCGTGCCGATGA CAAGTCCGGGCGAGACCAGGTATCGATGGTCATCAAATGCATGAAACAGG ATGGCGCGCTGGCTACGCTCTACGAAAAATGGTTCGGTGGCAAGCCCCCG GCGGATTCTTCTACTGCCAAGATCGCTCCGGGACATGGCGTACCCAACAT GGACGGCTACGACGCCACGCCTGTCGCGCTGAAGTGCTCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17355:576..1418+

>mRNA_P-wetherbeei_contig17355.2.1 ID=mRNA_P-wetherbeei_contig17355.2.1|Name=mRNA_P-wetherbeei_contig17355.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig17355:576..1418+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACTTTCCCGAATCGCCCTGCCTTTCCTGGCCACCCTGGCCTTGAG
TGCCTCGGTCCTTGCCCAACAGCCGATCTCGACGGCCGTTGATGCCACGT
TCGCCCCACATGCCATGCCCAAGCTGGGCGGCGGCATCGAAGGCTTCAAT
GTCGACCTCGCCAACGAGATCGCCAAACGCCTCAAGCGCCCGATCAACAT
CGAGCCGACACAATTTTCGGGCCTGATCCCCGGCCTCAACGCCAAGAAAT
ACGACTGGATCGCGGCACCCACCACCGTCACGCCGGAACGCGCCAAGGCA
CTGCTGTTCACCGAGGGCTATCTCGACACCGACTTCCAGTTCTTGGTCAA
GAAGAGCGACCCGGAAATCAAGTCGCTTGAGGAACTCAAGGGCAAGACCA
TATCGGTAAACAAGGGGTCTGCCTATGACACCTGGGCCAAGAACAACGCC
GAGAAATACGGCTTCAAATACGACGTCTACGACACCAATGCCGACGCCGT
GCAGGCGGTGCTGTCCGGCCGCGCCAGTACCAACCTTGCCGGTAATACCG
TCGTGGCATGGGCTGCCAAGCAGAATCCGATGGTCAAGACCACCTACACG
ATCAAGACCGGCCTGGTGTGGGCGGTACCGTTCCGTGCCGATGACAAGTC
CGGGCGAGACCAGGTATCGATGGTCATCAAATGCATGAAACAGGATGGCG
CGCTGGCTACGCTCTACGAAAAATGGTTCGGTGGCAAGCCCCCGGCGGAT
TCTTCTACTGCCAAGATCGCTCCGGGACATGGCGTACCCAACATGGACGG
CTACGACGCCACGCCTGTCGCGCTGAAGTGCTCCTGA
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