mRNA_P-wetherbeei_contig17352.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17352.2.1
Unique NamemRNA_P-wetherbeei_contig17352.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A1F4BG80_9PROT (RseA_N domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BG80_9PROT)

HSP 1 Score: 140 bits (352), Expect = 4.960e-39
Identity = 82/176 (46.59%), Postives = 109/176 (61.93%), Query Frame = 1
Query:    1 MDRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTRFQTLMKDEPTQLAPR-LTLRRSANFALSMAASVCAVSVVLMLVFTDNALSPLGQIATAPKVDETARARAEPPAPLVAAVKEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPRDGDGR 525
            MD+ISA MDGE    + R+   RLKQD E  + W TFHLIGD +RG+  L   F  R    +  EPT LAPR    RR A +ALS AAS+ AV++V  + F +N L+P  ++A AP    +A   +   A + +   EGK+N++L+AHQ FSPSTA QG+APY+R+VS  R   GR
Sbjct:    1 MDKISALMDGELEAHQAREQWPRLKQDQELLQHWDTFHLIGDALRGERALSASFSERLVARLDGEPTVLAPRRAAARRVAAYALSAAASLSAVALVGWVAFVNNPLAPQAELAKAPIAPPSATIPSTQ-AQIASVPNEGKMNDFLLAHQAFSPSTAIQGLAPYIRSVSNTRQDRGR 175          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A0S8C945_9PROT (RseA_N domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C945_9PROT)

HSP 1 Score: 133 bits (334), Expect = 2.450e-36
Identity = 79/176 (44.89%), Postives = 109/176 (61.93%), Query Frame = 1
Query:    1 MDRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTR-FQTLMKDEPTQLAPRLTLRRSANFALSMAASVCAVSVVLMLVFTDNALSPLGQIATAPKVDETARARAEPPAPLVAAVKEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPRDGDGR 525
            M+ ISA MDGE  +++ +Q + RLK+D E   +W  FHLIGD++RG+ +L      R     +  EPT LAPR T ++   +ALS AAS+ AV+ V  L F +N L+P  +IA AP   ++    A P   L +   +G +NEYL+AHQE+SPSTA QG+APY+RTVS      GR
Sbjct:    1 MEPISALMDGELSESQMQQHLARLKEDPELLHSWDMFHLIGDVLRGERLLLSGAFRRGIIEKLASEPTVLAPRRTKKKVFTYALSAAASISAVAAVGWLAFFNNPLAPSSEIARAP---QSLPVTAAPSPQLSSVPSDGTMNEYLIAHQEYSPSTAIQGLAPYIRTVSGAPAAAGR 173          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A1F4DHB8_9PROT (RseA_N domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DHB8_9PROT)

HSP 1 Score: 130 bits (327), Expect = 2.790e-35
Identity = 80/177 (45.20%), Postives = 108/177 (61.02%), Query Frame = 1
Query:    1 MDRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTRFQTLMKDEPTQLAPRL-TLRRSANFALSMAASVCAVSVVLMLVFTDNALSPLGQIATAPKVDETARARAEPPAPLVAAV-KEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPRDGDGR 525
            MD+ISA MDGE  + + RQ + RL+Q  E  E+W TFHLIGD +RGD +L  +   R    +  EP  +APR    R+   +ALS AAS+ AV++V  +  + + +S   +IA AP       A    PAP +A+V  EG +NEYL+AHQ FSPSTA QGVAPY+R+VS  +    R
Sbjct:    1 MDKISALMDGELDERQARQELARLRQQRELRESWDTFHLIGDALRGDALLSANLKRRVSERLAQEPIVMAPRRRAARKIVTYALSAAASISAVALVGWVAISTSTVSTQPEIARAPAPAAILPA----PAPQMASVPSEGSMNEYLLAHQGFSPSTAIQGVAPYIRSVSVSQPAKNR 173          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A7V8ZR46_9BURK (Sigma-E factor negative regulatory protein n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZR46_9BURK)

HSP 1 Score: 125 bits (315), Expect = 1.850e-33
Identity = 85/176 (48.30%), Postives = 101/176 (57.39%), Query Frame = 1
Query:    1 MDRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTRFQTLMKDEPTQLAP-RLTLRRSANFALSMAASVCAVSVVLMLVFTDNAL----SPL-GQIATAPKVDETARARAEPPAPLVAAVKEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPR 510
            MD+ISA MDGE G+   R  +  LK   E  E W +FH+IGD +R D  L  DF  +F  L+  EPT LAP R         ALS AASV AV++V  L  ++N L    SP    +A AP     A A A   AP +       VN+YL+AHQEFSPSTA QGVAPYVRTVSE R
Sbjct:    1 MDKISALMDGELGEYNARSALASLKSQAELREQWMSFHVIGDALRQDAQLSCDFSRKFGELLAKEPTALAPARRAAATPRRMALSAAASVAAVAMVGWLALSENPLLQPDSPRPDNLAAAPS--SLASAPAARSAPSLEFETSSGVNDYLLAHQEFSPSTAIQGVAPYVRTVSESR 174          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A1F4DF10_9PROT (RseA_N domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DF10_9PROT)

HSP 1 Score: 124 bits (311), Expect = 7.610e-33
Identity = 77/176 (43.75%), Postives = 101/176 (57.39%), Query Frame = 1
Query:    1 MDRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTRFQTLMKDEPTQLAPRLTL-RRSANFALSMAASVCAVSVVLMLVFTDNALSPLGQIATAPKVDETARARAEPPAPLVAAVKEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPRDGDGR 525
            MDRISA MDGE  Q + RQ   RL+Q  E  E W  FHLIGD +RG+  L   F  R    +  EPT LAPR  + R+   +ALS AAS+ AV++V  + F+ N  SP  ++A+ P         A  P  L +   +G +NEY++AHQ FSPST  QGV PY+R+VS  +    R
Sbjct:    1 MDRISALMDGELDQAQARQEFARLRQQREMRERWDIFHLIGDALRGEHPLSAGFTRRLSQRLALEPTVLAPRRGIVRKVTTYALSAAASLSAVALVGWVAFSTNIGSPRPEVASVPAPVAVIPVPAAVPQ-LASVPYDGAMNEYILAHQGFSPSTVIQGVVPYIRSVSSDQSAKTR 175          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A1F3ZXG2_9PROT (RseA_N domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZXG2_9PROT)

HSP 1 Score: 115 bits (288), Expect = 2.140e-29
Identity = 77/174 (44.25%), Postives = 98/174 (56.32%), Query Frame = 1
Query:   22 MDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTRFQTLMKDEPTQLAP-RLTLRRSANFALSMAASVCAVSVVLML-VFTDNALSPLGQIATA--PKVDETARAR--AEPPAPLVAAVKEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPRDGDGR 525
            MDGE      RQ + RL+Q D   E W TFHLIGD +RG+  L  +F  RF   +  EPT LAP R T  +   + LS AAS+ AV++V  L V T  A +P  ++A A  P V E++       P A L +   +G +NEYLMAH  FSPST  QGVAPY+RTV+       R
Sbjct:    1 MDGELDSQSARQALSRLRQHDGMRENWDTFHLIGDALRGEETLSPEFGRRFAQRLAGEPTVLAPARSTAPKLTAYTLSAAASLAAVALVGWLAVGTRTATTPPAELANAAAPAVAESSAPEPVTAPKAQLASEPYDGTLNEYLMAHTGFSPSTVIQGVAPYIRTVAASHSEQNR 174          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A6F8VDE8_9PROT (Sigma-E factor negative regulatory protein n=1 Tax=Sulfurimicrobium lacus TaxID=2715678 RepID=A0A6F8VDE8_9PROT)

HSP 1 Score: 112 bits (279), Expect = 3.870e-28
Identity = 74/172 (43.02%), Postives = 96/172 (55.81%), Query Frame = 1
Query:    4 DRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTRFQTLMKDEPTQLAPRLTLRRSAN-FALSMAASVCAVSVVLMLVFTDNAL-SPLGQIATAPKVDETARARAEPPAPLVAAVKEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPRD 513
            ++IS  MDGE    E ++    L QD E    W  +HLIGD++R   V+ DDFM RF   +  EPT LAP  T R +    ALS AASV AV +V+  V    A+ +P   +A A K  +   A A+             VN YL+AHQE+SPS A +GVAPY+RTVSE R+
Sbjct:    6 EKISQLMDGELDDAEAQRFFAAL-QDSEAQREWQAYHLIGDVLRDTSVVSDDFMGRFSERLAGEPTVLAPHRTSRHNTRTIALSAAASVTAVGLVVWAVLQTGAVHAPPADLAMA-KAQQVELASAD-------------VNPYLLAHQEYSPSVAMEGVAPYIRTVSETRE 162          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A658BQC8_9PROT (Anti-sigma factor n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A658BQC8_9PROT)

HSP 1 Score: 105 bits (262), Expect = 1.240e-25
Identity = 72/176 (40.91%), Postives = 95/176 (53.98%), Query Frame = 1
Query:    4 DRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTRFQTLMKDEPTQLAP-RLTLRRSANFALSMAASVCAVSVVLMLVF-TDNALSPLGQIATAPKVDETARARAEPPAPLVAAVKEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPRDGDGR 525
            ++IS FMDGE+ + + ++ +  L Q     + W  +HLIGD +RG   +  DFM RF T + +EPT LAP R    R   FALS AASV AV  V+  V  T    +  G +A      E ARA                VN YL+AHQE+SPS A QG++ YV+TVSE R+   R
Sbjct:    3 EQISEFMDGEADEEQAKRLLAIL-QHSGAQQEWHAYHLIGDELRGTFSVSSDFMERFTTRLAEEPTILAPSRFAKPRPRTFALSAAASVAAVGFVVWAVMQTGGESTTSGMVAANAPQAELARAN---------------VNPYLLAHQEYSPSVAMQGMSSYVQTVSEVREAAAR 162          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A1F3ZIL9_9PROT (RseA_N domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3ZIL9_9PROT)

HSP 1 Score: 105 bits (262), Expect = 2.380e-25
Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = 1
Query:    4 DRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTRFQTLMKDEPTQLAPRLTLRRSA-NFALSMAASVCAVSVVLMLVF----TDNALSPLGQIATAPKVDETARARAEPPAPLVAAVKEGKV-------NEYLMAHQEFSPSTAFQGVAPYVRTVSEPRDG 516
            +++SA MDGE    E  + +  LK D++  +TWA +H++GD +R  P L  DF  +    + +EPT LAP+  L+ S   +A+ +AASV AVS+V +L +     + + +PL   A      + A A     A +VAA     V       N YL+AHQEFSPS A +G+  YVRTVSE ++G
Sbjct:    3 EQLSALMDGELTSDEMARQIGALKNDNDLRQTWAAYHVLGDALRKSPQLSLDFSAKLARQLAEEPTVLAPQRKLQPSTPRYAMPLAASVAAVSLVGVLAWQMVRVNQSDAPLALAAAHVAATQQAAATKPKAAQIVAAKTPESVQFSRVVSNPYLLAHQEFSPSYAMEGIPAYVRTVSEHQEG 185          
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Match: A0A1W6SRB0_9PROT (RseA_N domain-containing protein n=1 Tax=Nitrosospira lacus TaxID=1288494 RepID=A0A1W6SRB0_9PROT)

HSP 1 Score: 103 bits (258), Expect = 9.200e-25
Identity = 72/183 (39.34%), Postives = 99/183 (54.10%), Query Frame = 1
Query:   10 ISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVLRDDFMTR-FQTLMKDEPTQLAPRLTLRRSANFALSMAASVCAVSVV--LMLVFTDNAL--------SPLGQIATAPKVDETARARAEPPAPLVAAVKEGKVNEYLMAHQEFSPSTAFQGVAPYVRTVSEPRDGDGR 525
            ISA MDGE  + +    + +LK+ +E  + WA +HLIGD M G P  R   + R     +  EPT LAPR    R  + A ++AASV AV+ V  + L   D +         +P+   A AP    TA A    P   V+A    ++N YL+AH +FSP+TA  GVAPY+RTV+EPR+   R
Sbjct:    5 ISALMDGELDEEDAASIITQLKKTEELRDEWAVYHLIGDAM-GRPEARSAHIARRVSARLAVEPTVLAPRPQTARHKSKAYAVAASVAAVAAVGWISLQTADRSAENLAASQPAPVTLAANAPISHSTAAAAQTIPVISVSAPAPAQINHYLLAHGQFSPNTAMHGVAPYMRTVAEPRENSAR 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17352.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4BG80_9PROT4.960e-3946.59RseA_N domain-containing protein n=1 Tax=Betaprote... [more]
A0A0S8C945_9PROT2.450e-3644.89RseA_N domain-containing protein n=1 Tax=Betaprote... [more]
A0A1F4DHB8_9PROT2.790e-3545.20RseA_N domain-containing protein n=1 Tax=Betaprote... [more]
A0A7V8ZR46_9BURK1.850e-3348.30Sigma-E factor negative regulatory protein n=2 Tax... [more]
A0A1F4DF10_9PROT7.610e-3343.75RseA_N domain-containing protein n=1 Tax=Betaprote... [more]
A0A1F3ZXG2_9PROT2.140e-2944.25RseA_N domain-containing protein n=1 Tax=Betaprote... [more]
A0A6F8VDE8_9PROT3.870e-2843.02Sigma-E factor negative regulatory protein n=1 Tax... [more]
A0A658BQC8_9PROT1.240e-2540.91Anti-sigma factor n=1 Tax=Nitrosomonadales bacteri... [more]
A0A1F3ZIL9_9PROT2.380e-2538.25RseA_N domain-containing protein n=2 Tax=unclassif... [more]
A0A1W6SRB0_9PROT9.200e-2539.34RseA_N domain-containing protein n=1 Tax=Nitrososp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17352contigP-wetherbeei_contig17352:497..1024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1288494.EBAPG3_14210
Preferred namerseA
PFAMsRseA_N
Model size528
Max annot lvl28216|Betaproteobacteria
KEGG koko:K03597
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.51e-25
EggNOG OGsCOG3073@1|root,COG3073@2|Bacteria,1QANZ@1224|Proteobacteria,2VVPR@28216|Betaproteobacteria,373CP@32003|Nitrosomonadales
DescriptionAnti sigma-E protein RseA, N-terminal domain
Cds size528
COG categoryT
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.0383115-CDS-P-wetherbeei_contig17352:496..10241683186115.0383115-CDS-P-wetherbeei_contig17352:496..1024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17352 497..1024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17352.2.1prot_P-wetherbeei_contig17352.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17352 497..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17352.2.1

>prot_P-wetherbeei_contig17352.2.1 ID=prot_P-wetherbeei_contig17352.2.1|Name=mRNA_P-wetherbeei_contig17352.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
MDRISAFMDGESGQTETRQTMQRLKQDDECCETWATFHLIGDMMRGDPVL
RDDFMTRFQTLMKDEPTQLAPRLTLRRSANFALSMAASVCAVSVVLMLVF
TDNALSPLGQIATAPKVDETARARAEPPAPLVAAVKEGKVNEYLMAHQEF
SPSTAFQGVAPYVRTVSEPRDGDGR*
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mRNA from alignment at P-wetherbeei_contig17352:497..1024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17352.2.1 ID=mRNA_P-wetherbeei_contig17352.2.1|Name=mRNA_P-wetherbeei_contig17352.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig17352:497..1024+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCGAATTTCAGCGTTCATGGACGGTGAATCGGGGCAAACGGAGAC GCGGCAGACCATGCAGCGCCTCAAGCAGGATGACGAATGTTGCGAAACGT GGGCGACATTTCACCTGATCGGCGACATGATGCGCGGTGATCCGGTGCTG CGCGACGACTTCATGACGCGCTTTCAGACGCTGATGAAGGACGAACCGAC CCAGCTTGCGCCGCGCCTCACGCTGCGAAGATCCGCCAACTTTGCGCTTT CCATGGCCGCTTCGGTGTGTGCGGTCTCGGTGGTCTTGATGCTGGTCTTC ACCGACAATGCATTGAGCCCGCTGGGACAGATAGCCACCGCACCCAAAGT CGATGAAACCGCGCGCGCGCGCGCCGAACCGCCTGCGCCGCTGGTGGCCG CCGTCAAAGAGGGCAAAGTCAACGAGTATCTCATGGCGCACCAGGAATTC TCGCCCAGCACCGCATTCCAGGGCGTAGCGCCGTACGTGAGAACCGTGTC GGAACCACGCGATGGCGATGGCCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17352:497..1024+

>mRNA_P-wetherbeei_contig17352.2.1 ID=mRNA_P-wetherbeei_contig17352.2.1|Name=mRNA_P-wetherbeei_contig17352.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig17352:497..1024+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCGAATTTCAGCGTTCATGGACGGTGAATCGGGGCAAACGGAGAC
GCGGCAGACCATGCAGCGCCTCAAGCAGGATGACGAATGTTGCGAAACGT
GGGCGACATTTCACCTGATCGGCGACATGATGCGCGGTGATCCGGTGCTG
CGCGACGACTTCATGACGCGCTTTCAGACGCTGATGAAGGACGAACCGAC
CCAGCTTGCGCCGCGCCTCACGCTGCGAAGATCCGCCAACTTTGCGCTTT
CCATGGCCGCTTCGGTGTGTGCGGTCTCGGTGGTCTTGATGCTGGTCTTC
ACCGACAATGCATTGAGCCCGCTGGGACAGATAGCCACCGCACCCAAAGT
CGATGAAACCGCGCGCGCGCGCGCCGAACCGCCTGCGCCGCTGGTGGCCG
CCGTCAAAGAGGGCAAAGTCAACGAGTATCTCATGGCGCACCAGGAATTC
TCGCCCAGCACCGCATTCCAGGGCGTAGCGCCGTACGTGAGAACCGTGTC
GGAACCACGCGATGGCGATGGCCGCTAG
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