mRNA_P-wetherbeei_contig17351.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17351.1.1
Unique NamemRNA_P-wetherbeei_contig17351.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A1F3YFF8_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YFF8_9PROT)

HSP 1 Score: 196 bits (499), Expect = 1.840e-59
Identity = 104/152 (68.42%), Postives = 114/152 (75.00%), Query Frame = 1
Query:    7 LPLASEDATLALGAALARGA----LPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGREWRQSALA 450
            L L  E ATL LG ALA GA    L G VL L G+LG+GKTTLVRGLLRALG+ GRVKSPTY LVE Y+L RL+LYHFDFYRFKDR EW+SSGFREHFNPESLCIVEWPE A GLL PPDL + L     GR A  AA+S  G  WR +AL+
Sbjct:    5 LSLPDEGATLRLGEALAAGAEAGKLRGLVLHLRGELGSGKTTLVRGLLRALGYPGRVKSPTYTLVEPYSLLRLHLYHFDFYRFKDRSEWLSSGFREHFNPESLCIVEWPERAGGLLGPPDLEIHLRYHAQGRTAALAAYSTPGEAWRDAALS 156          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A1F4F6V8_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F6V8_9PROT)

HSP 1 Score: 191 bits (484), Expect = 2.680e-57
Identity = 96/144 (66.67%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 LRLPLASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGREW 432
            L + L    AT ALGAALA G  PGRVL+L GDLGAGKTTLVRGLLRALG+ GRVKSP+Y LVE Y LS L+ YHFDFYRFKDR EW+SSGFRE+FNP S+C+VEWPE A  LL+PPD+ V L      R+A   AHS AG  W
Sbjct:    3 LDINLPDAGATEALGAALATGVAPGRVLYLRGDLGAGKTTLVRGLLRALGYAGRVKSPSYTLVEPYKLSSLHFYHFDFYRFKDRSEWLSSGFREYFNPRSVCVVEWPEKAGDLLAPPDVEVQLAFCAEHRKATLQAHSAAGEAW 146          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A1F4FIH1_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FIH1_9PROT)

HSP 1 Score: 189 bits (479), Expect = 1.520e-56
Identity = 95/140 (67.86%), Postives = 107/140 (76.43%), Query Frame = 1
Query:   13 LASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGREW 432
            L   +ATL LGAALA G  PGRVL L G+LG GKTTLVRGLLRALG  GRVKSP+Y+L+E Y LS LNLYHFDFYRFKDR EW+SSGFRE+FNP+S+CIVEWPE A   L+PPDL + LE A   RRA   A + AG  W
Sbjct:    7 LPDAEATLRLGAALAAGVAPGRVLHLRGELGTGKTTLVRGLLRALGHRGRVKSPSYSLLEPYTLSSLNLYHFDFYRFKDRSEWLSSGFREYFNPDSVCIVEWPERAGEDLAPPDLELRLEFAGEARRASLEARTPAGESW 146          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A537CD86_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=6 Tax=Bacteria TaxID=2 RepID=A0A537CD86_9PROT)

HSP 1 Score: 184 bits (468), Expect = 6.910e-55
Identity = 93/146 (63.70%), Postives = 110/146 (75.34%), Query Frame = 1
Query:   13 LASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGREWRQSALA 450
            L    ATL +GAALA G  PGRVL L G+LG GKTT+VRGLLR LG+ GRVKSP+Y LVE Y++SRLNLYHFDFYRFKDR EW+SSGFRE+FN +S+C+VEWPE A  LL+ PDL + LE A  GRR    +HS+ G  W  S L+
Sbjct:    7 LPDAPATLRVGAALAGGVAPGRVLHLRGELGTGKTTVVRGLLRGLGFAGRVKSPSYTLVEPYSISRLNLYHFDFYRFKDRSEWLSSGFREYFNADSVCLVEWPERAGTLLAAPDLDLALEFAGEGRRVILQSHSRTGDVWLLSFLS 152          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A521VJU1_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VJU1_9PROT)

HSP 1 Score: 184 bits (467), Expect = 1.110e-54
Identity = 95/146 (65.07%), Postives = 105/146 (71.92%), Query Frame = 1
Query:   13 LASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGREWRQSALA 450
            L  E ATL LGAA A GA  G  L L G+LG+GKTTL RGL+R LG   RVKSPTY L+E Y +SRLNLYHFDFYRFKD  EW+SSGF+EHF P+SLC+VEWPE A   L PPDL V LEI   GRRA   AH+ AG  W  SALA
Sbjct:    8 LPDETATLRLGAAFAPGARNGLTLHLRGELGSGKTTLARGLIRGLGSQERVKSPTYTLLEHYTISRLNLYHFDFYRFKDPSEWLSSGFQEHFGPDSLCLVEWPERAGASLPPPDLEVALEIPARGRRARLRAHTPAGETWLASALA 153          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A6M4HAW7_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=2 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4HAW7_9PROT)

HSP 1 Score: 184 bits (466), Expect = 1.730e-54
Identity = 90/140 (64.29%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   10 PLASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGRE 429
            PL+ E ATLALGAALARG  PG V+FL G+LGAGKTTLVRG LRALG  GRVKSPTYALVE+YA+SRL+L+HFDFYRF D  EW+ +GFRE FN + + +VEWPE A G L PPDL + L + + GR A   +H+ AG +
Sbjct:    8 PLSDETATLALGAALARGLRPGMVVFLQGELGAGKTTLVRGALRALGHEGRVKSPTYALVEVYAVSRLDLHHFDFYRFSDPREWIDAGFRESFNGQVVSLVEWPEKATGQLPPPDLEIALRVLDSGREATLKSHTPAGEQ 147          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A522VRG6_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A522VRG6_9PROT)

HSP 1 Score: 181 bits (460), Expect = 1.260e-53
Identity = 95/146 (65.07%), Postives = 104/146 (71.23%), Query Frame = 1
Query:   13 LASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGREWRQSALA 450
            L  E ATL LGAALA GA  G  L+L G+LG+GKTTL RGL+R LG   RVKSPTY L+E Y  SRLNLYHFDFYRFKD  EW+SSGF+EHF PESLC+VEWPE A   L PPDL V LE    GRRA   A + AG  W  SALA
Sbjct:    8 LPDEAATLRLGAALAPGARNGLTLYLRGELGSGKTTLARGLIRGLGSEERVKSPTYTLLEHYTFSRLNLYHFDFYRFKDPSEWLSSGFQEHFGPESLCLVEWPERAGASLMPPDLEVALEALATGRRARLRALTPAGEAWLASALA 153          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A1F4B3C7_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B3C7_9PROT)

HSP 1 Score: 181 bits (459), Expect = 1.780e-53
Identity = 95/146 (65.07%), Postives = 106/146 (72.60%), Query Frame = 1
Query:   13 LASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGREWRQSALA 450
            L  E+ATL LGAALA GA  G V  L GDLG+GKTTL RGLLRALG   RVKSPTY LVE Y +SRLNLYHFDFYRF D  EW+SSGF E+F P++LC+VEWPE A   L+PPDL V LE  + GRRA   A S AG +W  SA A
Sbjct:    8 LPDEEATLGLGAALAAGAHNGLVCHLRGDLGSGKTTLARGLLRALGCQERVKSPTYTLVEHYTVSRLNLYHFDFYRFNDPAEWLSSGFPEYFGPDALCLVEWPERAGATLAPPDLEVALEFPQSGRRARLRALSPAGGDWLASASA 153          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A521YXF5_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YXF5_9PROT)

HSP 1 Score: 181 bits (458), Expect = 2.210e-53
Identity = 94/144 (65.28%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 LRLPLASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAGREW 432
            L + L    AT ALGAALA G  PGRVL L GDLGAGKTTLVRGLLRALG+ GRVKSP+Y LVE Y +S L+ YHFDFYRFKDR EW+SSGFRE+FN  S+C+VEWPE A  LL+ PDL V L  +   R+A   AHS AG  W
Sbjct:    3 LDINLPDPAATEALGAALAAGVAPGRVLHLRGDLGAGKTTLVRGLLRALGYRGRVKSPSYTLVEPYEVSSLHFYHFDFYRFKDRSEWLSSGFREYFNSHSVCVVEWPEKAGDLLALPDLEVELFFSGDHRKATLQAHSAAGEAW 146          
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Match: A0A2U1RX31_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A2U1RX31_9PROT)

HSP 1 Score: 180 bits (456), Expect = 5.710e-53
Identity = 92/140 (65.71%), Postives = 105/140 (75.00%), Query Frame = 1
Query:    4 RLPLASEDATLALGAALARGALPGRVLFLSGDLGAGKTTLVRGLLRALGWTGRVKSPTYALVELYALSRLNLYHFDFYRFKDREEWVSSGFREHFNPESLCIVEWPEMAEGLLSPPDLHVTLEIAEPGRRAGFAAHSQAG 423
            RL L  E ATLALGAALA   +PG VL L G+LGAGKTTLVRGLLRALG  GRVKSPTY LVE+Y +SRL+LYHFDFYRF D  EW+ +GFR+ FN  ++C+VEWPE A G L P DL + LE+ EPGR A   A S AG
Sbjct:   13 RLDLPDEAATLALGAALAPHLVPGLVLALRGELGAGKTTLVRGLLRALGHAGRVKSPTYTLVEVYEVSRLSLYHFDFYRFHDPTEWIDAGFRDVFNGRNVCLVEWPERARGQLPPADLEIALEVTEPGRSATLTASSPAG 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17351.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YFF8_9PROT1.840e-5968.42tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A1F4F6V8_9PROT2.680e-5766.67tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A1F4FIH1_9PROT1.520e-5667.86tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A537CD86_9PROT6.910e-5563.70tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A521VJU1_9PROT1.110e-5465.07tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A6M4HAW7_9PROT1.730e-5464.29tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A522VRG6_9PROT1.260e-5365.07tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A1F4B3C7_9PROT1.780e-5365.07tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A521YXF5_9PROT2.210e-5365.28tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2U1RX31_9PROT5.710e-5365.71tRNA threonylcarbamoyladenosine biosynthesis prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17351contigP-wetherbeei_contig17351:268..1205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog395494.Galf_0794
Preferred nameamiC
PFAMsAMIN,Amidase_3
Model size938
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00064,RC00141
KEGG koko:K01448
KEGG ReactionR04112
KEGG Pathwayko01503,map01503
KEGG ModuleM00727
Hectar predicted targeting categorysignal anchor
Exons1
Evalue8.88e-43
EggNOG OGsCOG0860@1|root,COG0860@2|Bacteria,1MUQK@1224|Proteobacteria,2VHXN@28216|Betaproteobacteria,44V74@713636|Nitrosomonadales
EC3.5.1.28
DescriptionAmi_3
Cds size681
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01011,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.9880745-UTR-P-wetherbeei_contig17351:267..5241683186114.9880745-UTR-P-wetherbeei_contig17351:267..524Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17351 268..524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.9979446-CDS-P-wetherbeei_contig17351:524..12051683186114.9979446-CDS-P-wetherbeei_contig17351:524..1205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17351 525..1205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17351.1.1prot_P-wetherbeei_contig17351.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17351 525..1205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17351.1.1

>prot_P-wetherbeei_contig17351.1.1 ID=prot_P-wetherbeei_contig17351.1.1|Name=mRNA_P-wetherbeei_contig17351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
MGELGFPGALQPGVFVHRRMAGDGRGTPVPARPSRHAGNRRAGSPGGLRR
AFAGGARMAAVGLGFLAALVAFTAFAADQIVATRIWPAPDYTRVTLESKN
EIRYTLFAVNNPERLVLDLEGIEMSAVLADLNNKVTPSDPYIEKLRVAVN
RPGVTRLVLDLKAVVKAQAFTIKPVADYGHRLVLDIYPAVPTDPLLALLQ
DEAAKKSSAPAQPSATAEAAPAQAASP
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mRNA from alignment at P-wetherbeei_contig17351:268..1205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17351.1.1 ID=mRNA_P-wetherbeei_contig17351.1.1|Name=mRNA_P-wetherbeei_contig17351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=938bp|location=Sequence derived from alignment at P-wetherbeei_contig17351:268..1205+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGGCTTCCCCTCGCCTCGGAGGACGCCACGCTCGCCCTGGGCGCGGC CCTGGCCAGGGGCGCGCTTCCCGGCCGCGTGCTGTTCCTCTCGGGCGACC TCGGCGCGGGCAAAACGACCCTGGTGCGGGGGCTGCTGCGGGCCCTGGGC TGGACCGGACGGGTCAAAAGCCCTACCTACGCGCTGGTTGAACTTTATGC ACTTTCTCGGTTAAACTTGTATCACTTTGATTTTTATCGGTTCAAGGACC GCGAGGAATGGGTGAGCTCGGGTTTCCGGGAGCACTTCAACCCGGAGTCT TTGTGCATCGTCGAATGGCCGGAGATGGCCGAGGGACTCCTGTCCCCGCC CGACCTTCACGTCACGCTGGAAATCGCCGAGCCGGGTCGCCGGGCGGGCT TCGCCGCGCATTCGCAGGCGGGGCGCGAATGGCGGCAGTCGGCCTTGGCT TCCTTGCTGCGCTCGTAGCGTTCACTGCGTTCGCCGCCGACCAGATCGTC GCCACGCGGATCTGGCCCGCGCCCGACTACACCCGCGTCACGCTCGAATC GAAGAACGAGATCCGCTACACGCTGTTCGCGGTCAACAACCCCGAACGCC TGGTGCTCGACCTCGAGGGCATCGAGATGAGTGCGGTGCTCGCCGACCTC AACAACAAGGTCACCCCGTCCGACCCGTACATCGAAAAGCTGCGCGTGGC CGTGAACCGCCCCGGAGTGACGCGCCTGGTGCTCGACCTCAAGGCCGTAG TGAAGGCGCAGGCGTTCACCATCAAGCCGGTCGCCGACTACGGGCACCGG TTGGTGCTCGACATCTATCCCGCCGTGCCTACGGACCCCCTGCTCGCGCT CCTGCAGGACGAGGCGGCGAAAAAATCCAGTGCTCCTGCACAGCCTTCCG CGACCGCCGAGGCTGCGCCGGCGCAGGCAGCCTCCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17351:268..1205+

>mRNA_P-wetherbeei_contig17351.1.1 ID=mRNA_P-wetherbeei_contig17351.1.1|Name=mRNA_P-wetherbeei_contig17351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig17351:268..1205+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGAGCTCGGGTTTCCGGGAGCACTTCAACCCGGAGTCTTTGTGCA
TCGTCGAATGGCCGGAGATGGCCGAGGGACTCCTGTCCCCGCCCGACCTT
CACGTCACGCTGGAAATCGCCGAGCCGGGTCGCCGGGCGGGCTTCGCCGC
GCATTCGCAGGCGGGGCGCGAATGGCGGCAGTCGGCCTTGGCTTCCTTGC
TGCGCTCGTAGCGTTCACTGCGTTCGCCGCCGACCAGATCGTCGCCACGC
GGATCTGGCCCGCGCCCGACTACACCCGCGTCACGCTCGAATCGAAGAAC
GAGATCCGCTACACGCTGTTCGCGGTCAACAACCCCGAACGCCTGGTGCT
CGACCTCGAGGGCATCGAGATGAGTGCGGTGCTCGCCGACCTCAACAACA
AGGTCACCCCGTCCGACCCGTACATCGAAAAGCTGCGCGTGGCCGTGAAC
CGCCCCGGAGTGACGCGCCTGGTGCTCGACCTCAAGGCCGTAGTGAAGGC
GCAGGCGTTCACCATCAAGCCGGTCGCCGACTACGGGCACCGGTTGGTGC
TCGACATCTATCCCGCCGTGCCTACGGACCCCCTGCTCGCGCTCCTGCAG
GACGAGGCGGCGAAAAAATCCAGTGCTCCTGCACAGCCTTCCGCGACCGC
CGAGGCTGCGCCGGCGCAGGCAGCCTCCCCG
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